Array 1 30659-26234 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEN01000008.1 Salinivibrio kushneri strain IB563 scaffold8.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30658 29 100.0 32 ............................. CGGAAGAGATACCGAATCGCCTTTTTGAGGCC 30597 29 100.0 32 ............................. GGCGTAGCCAAACGAGCAAAACCAGCCATATC 30536 29 100.0 32 ............................. TAAGATTTCCATATTGWCTCCGACGGTTTGCA 30475 29 100.0 32 ............................. GTAAGTTGTCCGTGGAGGAGTTTAGAGATCTT 30414 29 100.0 32 ............................. CATCAGCGTTTGTTCAATAGTGATAGTCATAT 30353 29 100.0 32 ............................. GGCGTTTATACTGATGGAGTTCGTTTTTATAA 30292 29 100.0 33 ............................. TTACTATCGACAGCGGTGAGACTGTCACGCTGC 30230 29 100.0 32 ............................. TAGTAAATAGCGCGCTTGTGCTCCTCTGTGCC 30169 29 100.0 32 ............................. GGGATGGACGCTAACGACATCCGCAAGCTGAT 30108 29 100.0 32 ............................. ATCGATGAACTCGATGCGCAGTATATCGCCGA 30047 29 100.0 32 ............................. CTGGCCGAGGTGCAGGAGCAGCGGGATAAGGC 29986 29 100.0 32 ............................. CTGGTATTCAGGCCGCAGCCTGTCTTTGCTGA 29925 29 100.0 32 ............................. TACACGCGCATTACGGCCCTGGCCAATTCCAG 29864 29 100.0 32 ............................. CACTGACTACCTGATCCGCATCACTAACAACA 29803 29 100.0 32 ............................. CGGAGCGCTTGCCACGGCTTCAAAGCCGGGCA 29742 29 100.0 32 ............................. ATGACATGGCAATGGCTATGACTCTAGTTAGC 29681 29 100.0 32 ............................. GTGTCACCATCGCCATGATCGGGGGCGTTCCA 29620 29 100.0 32 ............................. TCAACACTAAGGAGGTTTTTTTTATGAGTAGT 29559 29 100.0 32 ............................. GGCTTAGGCAGACTCTTTGAGGTAGTGCAGGC 29498 29 100.0 32 ............................. ATGGATATATCACTATTGGTGTTTTCGGTAGA 29437 29 100.0 32 ............................. CCACTTTCAGCGCCAATAAGTCTGCCGCCTGA 29376 29 100.0 32 ............................. CGAAAAGCCTACCAAGCTTGTAACGCCAGAAT 29315 29 100.0 32 ............................. CTTTCCTGCCCGCAAGAAAACACAATCACCAC 29254 29 100.0 32 ............................. CGCCCAAGCCTATGGAAGAAGATGATCGGCGT 29193 29 100.0 32 ............................. TTCCACGACCCCGAAACAGGAGAGGAATCCAG 29132 29 100.0 32 ............................. AAAAAGTCGGAAAGATAGAACTGGATCGCGCA 29071 29 100.0 32 ............................. CTTTCCCTCCATAGCGGTGTTGTTTTTTCCAT 29010 29 100.0 33 ............................. GAGTTTGATTGCAGCGTTGATTTGCTCAAGGTC 28948 29 100.0 32 ............................. CGAACCGGTCTTGCTTCGCCAAACATTGCCGA 28887 29 100.0 32 ............................. CTCTTATTAAACCCGTCACTTACCGCGCTCTG 28826 29 100.0 32 ............................. GCCTTATGGGCTTAATGAGTAAGCAAGGCGGT 28765 29 100.0 32 ............................. TGGTCAGTCATGCAATCATAGTCGCCCGTAAA 28704 29 96.6 32 ...........Y................. CCAATCAGAGGCGAGCTAACACTTCCTTGAGC 28643 29 100.0 32 ............................. CCATTTCTGAGAAACGCGGTAAGGTTTGGCGT 28582 29 100.0 32 ............................. TTGAAATAAATCACGTCGTAAGTGAGACCCTT 28521 29 100.0 32 ............................. AGCTGGAAGGCGCTACGGGCGCGTCGTCAGAA 28460 29 100.0 32 ............................. GCTACCGATTGTTCTGCGCAGCAAGGCCAGTG 28399 29 100.0 32 ............................. GCGGTAATCGTCGACGAGCTTGTCATTTACTT 28338 29 100.0 32 ............................. ACCACATTGAAATGGATGGCAACGTTTATTCG 28277 29 100.0 32 ............................. CAAAAAGGACATGGAGAAGCGCACCGGCTTAG 28216 29 100.0 33 ............................. AGGCTGAGTGTGAGGCGCTGTCGCTTGATAAAC 28154 29 100.0 32 ............................. CGCCTAAACATACGAAAGGTTAATCTTGAGCA 28093 29 100.0 32 ............................. GTTATGATCAACGGCACGTGGTACGACTGCGA 28032 29 100.0 32 ............................. TGTTTTATAACTTCAACACTGGCGAGTTGTTA 27971 29 100.0 32 ............................. TGTTCTCTTGCTCGCTGCGTGATACAATAGAG 27910 29 100.0 32 ............................. CAAGGCTCGTCAAAACCATCGGTGCGCCAAAA 27849 29 100.0 32 ............................. CCTTTGGCGCCGAGAAACACTTCGACGGCGAC 27788 29 100.0 32 ............................. TTGTTAGCGTATGTGCCGTCTAACGGTTTGCG 27727 29 100.0 32 ............................. TCTAACAGCTTGTCATATAGTGAACACATCGA 27666 29 100.0 32 ............................. GCGATTACTGCGACGGCATCGCTGTTATCAAT 27605 29 100.0 32 ............................. CCCCCGAGCAGTTGGGGGCTTTCGCTGAGGCA 27544 29 100.0 32 ............................. CACTGGCGCTAATCAAAGGCGGCAATCCCTTT 27483 29 100.0 32 ............................. GTTATGATCAACGGCACGTGGTACGACTGCGA 27422 29 100.0 32 ............................. CATCAGACGCCAAATTTGCAATGATAGACTAA 27361 29 100.0 32 ............................. CAAACCCAGCGCGTTAGTAATGCGTCAAATGG 27300 29 100.0 32 ............................. CTACTGCCGTCAATCAGGCCCAGAGGTGACAG 27239 29 100.0 32 ............................. CTGGAATCTGTATTCGGTGGTCAGGGCGCTGT 27178 29 100.0 32 ............................. CGTGGATGTTCTTGATTGCTTTTAGCATTGGT 27117 29 100.0 32 ............................. ATCAGCTACGTGCTCACTGTCCATGTCGAGGT 27056 29 100.0 32 ............................. CACGCATCGAGGCCGAAAAGGCAGCCAAGGCA 26995 29 100.0 32 ............................. ACAAGGACAAAGAAGAGAGCAAGGGGATGGAC 26934 29 100.0 32 ............................. TAAACGCACGCGTGAGACAATACGAACAATCA 26873 29 100.0 32 ............................. AATAACCCTATTTCAAAAGTTGGGGTTTTTGA 26812 29 100.0 32 ............................. GTCTATGCGGCGGCAGACGGCGCGCTATCAGC 26751 29 100.0 32 ............................. TGACGAGCCGCATCAAACGTCGCGGCGTCGGT 26690 29 100.0 32 ............................. GCGAGATTGATCAATACGGCAACGTGAACACC 26629 29 100.0 32 ............................. CACATTGTTAAACGCTTCTACTGATTTAGTAA 26568 29 100.0 32 ............................. CTATAGTTGACTAGCCAACCTTCTAAAGAGGA 26507 29 100.0 32 ............................. CGAGTATTATATCGAACAAGATGGTGAGTTGG 26446 29 100.0 32 ............................. ATCGATCCAAACGTAGTCATCGCCACGCGAAA 26385 29 100.0 32 ............................. CCGCCGAACTTGGCAATTTTGATAGCGCCTAT 26324 29 100.0 32 ............................. CACTACCGGTTAAGGTGAGGTTTTGGCACTAT 26263 29 75.9 0 .........A......AA...T.T.C..A | T [26257] ========== ====== ====== ====== ============================= ================================= ================== 73 29 99.6 32 GTGTTCCCCGTGCCCACGGGGATGAACCG # Left flank : CGATGATCGAAGAGGTATTAGCGGCAGGTGATATTACACCGCCTGAACCGCCTCATGACGCCCAACCACCAGCTATACCTGAGCCAAAATCAATCGGTGATAGCGGACATAGGAGCGGCTAGATAATGAGTATGCTTGTTGTCGTCACCGAAGCCGTACCGCCAAGGTTACGTGGCAGACTTGCTGTCTGGTTGCTCGAAGTTCGCGCTGGTGTTTATGTGGGCGATGTAACACGTCGCGTGCGGGAAATGATTTGGGAGCAAATAACTGAACTCGCTGATGTCGGCAACGTGGTGATGTGTTGGGCGGTGAATAATGAATCAGGTTTTGACTTTCAAACTTATGGTGAAAACCGTCGCGAGCCTGTCGATTTAGATGGTTTAAGGTTGGTGGTATTTAAGCCGAGTGYTGAGGATAAATAAGCCCAGTTTGCTCTTTAAAAAGTTGGTAGAAAAATACAGGTCGATTTTTATTATATAAAACAGTAATATCCGTTTAGA # Right flank : ATTCCCTTTTCTAACCGAAGTTGGGTTTTGCTATCTTCCTCATGTTCATGGGAAGTGGGGGCGTGAGAATGTCGAATATGTTATGGGTAGGAGTGTAGGTAGTATATCGAAACATCAACGTCGATATGCTATTTACGTTAGCAGTGAGAAGGGTTATCGAACGATAAGGCTGAGATCGTCTTATCTCAGCCTTGTGATATTGCCGAGCGCTAATAAGCTACGCCTCACTCAGTTGCTCGACCGCCTCCAGTGCCTGAGAGCCGTATATCAATGACGGGCCGCCACCCATTACGATCGCGACGTTAATGGCCTCTACGCATTCTTGTTTGGTTGCGCCATGTTTGAGGGCGGCGGCCACGTGAGCACCGATACAGCCATCGCAGCGCGCGGCAATACCAATCCCTAGTGCAATCAACTCTTTGGTTTTTACATCGAGATCACCTTCAGCCATTGCTGCCCGATGCAGCTGCCCGAATGCGGACAGGGTGTCACTGCTGTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGCCCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2395-1644 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEN01000007.1 Salinivibrio kushneri strain IB563 scaffold7.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2394 28 100.0 34 ............................ CCGAACGCGTTAAGCTCTTTGATTAGCTCGATCA 2332 28 100.0 32 ............................ AAACTATAAAGCACTGCCTCAATGGAAGTTAT 2272 28 100.0 32 ............................ GCCATAATCTCCTATAATTATCTATATCGAAA 2212 28 100.0 32 ............................ TCGCAAATACATCTTTAATTTTTTGGTTTTTT 2152 28 100.0 33 ............................ TTTCCGGTGCAAGCGACCGGTTTTGAGTTTAAT 2091 28 100.0 32 ............................ GTTCCTTGCCAACGAATACGACAAGCATCAAC 2031 28 100.0 32 ............................ TGGCGGTGCCGTATTCTTGCGCTATGGCTTTT 1971 28 100.0 32 ............................ GCTCACCTCTCCACCTGGCGAATTGACCTCGA 1911 28 100.0 32 ............................ GCCGGTTTGGTCACCGGTGGACTTTCCTTTTT 1851 28 100.0 32 ............................ TCCAATTCTTCGAGTGTTTCCATTTCACGGAT 1791 28 100.0 32 ............................ AACAGCCACAGGTCCAAGCGCCTCTACCAAAG 1731 28 100.0 32 ............................ TGAACTTCACACCGGGCCTCGAAAACCAAGGT 1671 28 85.7 0 .....................G...GTG | ========== ====== ====== ====== ============================ ================================== ================== 13 28 98.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTGTCACTGTTGTCACTTTTTGGCTGATTTAAGTTTGTACTGTGTCTTACAATGGCTACGCATCACGTGCCTCGAACGCAGGGCGGTGTGTTTAGTTTTGCGCCCGCGAGTCCGTTCACGCCATACTTTGAAGCTCCGCGGTTTTAATTCACGTCGCATTAACGCAATCACATCGTCTTGGCGTAGGCCATAGAGTGCTTCAATCGCCTCAAACGGGGTTCGATCTTCCCACGCCATTTCTATAATTCGGTCAATCTCTCCCGGTTGTTCGTTCAATGCCATGTCGGTCTCCTTGTACTGGTGGCCAATAATACGCGTAGAGTCGGAAAAACCGATCAGCGTGTTCCTTCTAACCCATCAATGCTGTTACCCTTGTTTTTGGGCTCTTTAAAAATAAACAGCAAATACAGATAGTTACGGAAAGCCATTTTTAACAAGGGTAAAAGATGATGTTTATCCTAACGGCCTGTTGTCACTGACAATTATTACGTTATTCTATT # Right flank : ACACAAGCCCCAGCACGATGTTGGATAGGGGGACATTGCCAACGGGCGCCTGTCACGATCAGGGGTTAATAGTTGGCTCCGATGTCGGATGGCGCGCGGCGAAAGTCATACCAAGTTTGCACGATCGAGTTGGCGCTTATGCCGACCTACGCGAACTTTAACGTCGGTGGTGCCATTGGCGACCGAGACACAAGCCCCAGCACGGTGTTGGATAGGGGGACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGATGGCGCAGTGCAACTGGCGCCAGTTGCACTGCGCGCGACGCAAATCACACCTAGCTTGTACGATCGAGTTAGCGCTTGTCCGACCTTGTATCTCTCCTGGAGTTGAGGTTAGCTACCTCTGTTCCGGTGAGTTTGGTGATGCTGAGTCCGACCTTAGCACCTGATGCTGTTATGTAGATCAGCGCCCAGACTCTTTTGTTCTTATACATTGAATGGTATCCAAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //