Array 1 13201-17759 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSK010000083.1 Planktothricoides sp. FACHB-1370 contig83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 13201 36 100.0 37 .................................... AATGGTTTTTTCTCCTGCATTTCAATTTGCTGCCCCA 13274 36 100.0 40 .................................... ACAACGAAAATTTAAGCTAGTCATGTTTTACCCTCATTGA 13350 36 100.0 43 .................................... GCGCCGTAATGAAATAATGAACTGATTCAGCCAATTGACTTAA 13429 36 100.0 43 .................................... ACGACGAAGATAAAGCAAGCCAATGGGGGAAGCTTTTTTTTCA 13508 36 100.0 44 .................................... ATCAGGGGAAAAACAAATATACCACCATTCACTACTTTGTTTAA 13588 36 100.0 40 .................................... TGTTGTCGAACTTTTTTGATGCCCAGCCATCTTTGGTTGC 13664 36 100.0 40 .................................... GACATCTAATTGCCAGTGACTATATTTTTCTGCATGAGTT 13740 36 100.0 38 .................................... TTAAAGAAAATAATTTGCCTTCACCCAAAGAAATTATT 13814 36 100.0 40 .................................... TGCATAAAATTGCTGCCAGTCAAAATTGACAATACTGGGG 13890 36 100.0 41 .................................... GCAGGACGATGGAATCGAAGCAGTGACAATAACATTATTTC 13967 36 100.0 48 .................................... ATAGCCATTTTGATGATTCTCCTAAGGAGTATAGTTTCACTTAGAAGA 14051 36 100.0 38 .................................... CTATTAAGAGGTTTAGCCCCTTGATGATTACCTGCAAA 14125 36 100.0 41 .................................... AACTACTAAGGTTACTGTGGACTTACCGCAAGCAGCGGCAA 14202 36 100.0 38 .................................... GAAGCTAGGGCCATATGTACTCGCATACCCTTGACCAT 14276 36 100.0 40 .................................... ACTTTCAGTACTCAGAAGATGGGGAATATTCCATTGTAGT 14352 36 100.0 32 .................................... TGGAAGTTTTTCTAAGTGTGAAGGGGTATCAG 14420 36 100.0 38 .................................... GTCTTACCCAGCGGTTTTTAGCTATGTTGGAAGGAAAA 14494 36 100.0 37 .................................... ACAAAGAAGCAATTATCTGTTGGTTTTGTTGGGTGAC 14567 36 100.0 38 .................................... ACGACAGCAACAGCAACAACTACACAAAACCATAACTA 14641 36 100.0 40 .................................... GCAAAGTGAGAGAATGGCAGCGGGTGACGTGACCAACCAA 14717 36 100.0 39 .................................... TATTCCTACCCCTCTCAGTACTCCTTTAGTTTCATCTGT 14792 36 100.0 39 .................................... TGCCAAAGGGTTCCCCCCCTCTAGATATGCTTTGATCCA 14867 36 100.0 39 .................................... GGTCAACTGCCTCTTCCTTTACGGAAGGGCATTCAATTT 14942 36 100.0 41 .................................... ATATAAGCTAGACATGACGAGATTCCTCTTGTGTTTACATT 15019 36 100.0 39 .................................... ATCTCGTGGCTGCGTCGCCACGTAGAGACTTTTGTTAGC 15094 36 100.0 38 .................................... GATTTCCTGTAGAGATGTCCTCTACTTTGATTCCATAT 15168 36 100.0 37 .................................... AACAACTATCTTCTTAAAGACTTGACTTTTAGGTCAG 15241 36 100.0 41 .................................... TGTCCGCCAGAAGGGTAGTAGACCTAAGTCTACCAAGGATG 15318 36 100.0 38 .................................... GCTTGTTGGTGCGATTCCGGTACTTTTTCCAGGGCATC 15392 36 100.0 40 .................................... TGAATCGATTCTGAGAAGACGTTGTATCCCACTCAACAGA 15468 36 100.0 41 .................................... CGCGGTTTGTTCTGGCTGCGGTTGTGGTTGCGCGATCGCGG 15545 36 100.0 40 .................................... GACTCAAATGTTAATTTAATCACGTCATTCTCAGGATAGG 15621 36 100.0 38 .................................... GTCGGGTCTAATGCAAGCAACGCCTTTTTCTCTTGACG 15695 36 100.0 37 .................................... TATGAATAGCAGCCCTGATTTCTGGGTCTGTAGTCCA 15768 36 100.0 38 .................................... TCTTCTTCAGAAAGAAGAGCGCATGGAAAAAGGTTGTT 15842 36 100.0 40 .................................... AGTTCCCACTCAGGGTAGGAATCCTCCTCTTTAAATAATT 15918 36 100.0 35 .................................... AGAGAAGTGGGCGATATGTTATTGGATGTTATGTC 15989 36 100.0 39 .................................... CGTCAAAAATCCATTCTTGGCCTTCGGAGTTTTCATCAA 16064 36 100.0 38 .................................... AGGGATGTGGGTGAATTTTGGACAACTCACGGGGAAGA 16138 36 100.0 35 .................................... ACTAAGATTATCAATTTTTGCTCCCTTTATTAACT 16209 36 100.0 40 .................................... ATCAAAATCCTTCTGATTTCGTTTTTCGTTGATATTCTAA 16285 36 100.0 43 .................................... GCATCCAATATGCGCGATCGCGGTTTTAAGTTACTAGATTATT 16364 36 100.0 40 .................................... AAATCCGTGATGTAGAATGGCGGCTGCCATCCTGTTTCGT 16440 36 100.0 40 .................................... GTCTTTTCTTTTGCTTCCAATAAAGCAATTGTGCGATCGA 16516 36 100.0 44 .................................... TTTTCTCTCTTGCTTCCAATAAAGCAATTGTGCGATCAATATTT 16596 36 100.0 43 .................................... AAATACAAAATTATTGCTATACAAAAAAACAAGCACTAGAAAA 16675 36 100.0 45 .................................... AAACAGGAACAAGCTTTGTAAGTAAGGTAGTTCAATACCTTAAAA 16756 36 100.0 37 .................................... ACTCCCCGTCCGTATTCAAGGATGGGACTTCCATCCT 16829 36 100.0 45 .................................... TTGAATCTGAATTCGATTCCCACCTCTCTCATTCCCTCTCCCTCC 16910 36 100.0 34 .................................... CCTCCCTTTAAAGGGAAGAGACTATATATATTTG 16980 36 100.0 40 .................................... TCCCGGATATTGACAGTAGCTCCTCCTATCTGGTGAGCAA 17056 36 100.0 38 .................................... CGCATACTCTTCTTGTTTCTCCTTGAGTTCAAGTTTCA 17130 36 100.0 37 .................................... TTACTTCGTGGGAGCAGCTTAATTGCTCCCAAATTAT 17203 36 100.0 36 .................................... TCTCAGTCACACGAGAAACGCTTCCATCTTCATAGG 17275 36 100.0 38 .................................... TGAGCTTCCTCAATCAATTCAACGAAGCCAGCATTTAA 17349 36 100.0 40 .................................... TCCATATCTTATCGGTAGAAGGACGCCAGCTTTGGAGTAA 17425 36 100.0 37 .................................... AGATAAAGGGTTAGGTTAAATACAAATATCCATCATA 17498 36 100.0 39 .................................... AGATAGAGACCTTTGACCCGTTGGTCTTAACACCGATAC 17573 36 100.0 39 .................................... AGGCCGGTAAGACCAATCCTAAAGATTGGCAGAAGTTGC 17648 36 100.0 40 .................................... AGGAGAACCTCTTAAGGGCTTTGGTGGAATAGCAAACCCA 17724 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================ ================== 61 36 100.0 40 ATCCCCACTCGTTGGGGATATTAATTGATTGGAAAC # Left flank : CTGAAAACCGCTATAAACTAAAATAGAAACCGGGTTTCTGGGTTAACCCTGAAAACCACCGTAGGGGCGATTCGCGAATCGCCCCTACAATATTTTAAGCAATAACTTGTCTGCGGTCATGCTTCGCCCCTACCCCAAGAAACCCGGTTTCTTGCGTCAACCTTTGCCGAAAACTTAAACCAAAATAGAAACCGGGTTTCTGGGTTTTCCTGGGTTAACTCCCAGCCCAAGAAACCCGGTTTTGTGCGTCAACCTTTACCAAAAACTCAAAATAGAGACCGGATTTCCCGATAAAATAAATAACTAGCTAGTAACCTGGTCTTGCGAGGCTGGCCAAAAATCCCTGAAACTTAGCTAATTCGTCGGGAGCCTCGCACCCTCTCTGGGTAACGGTTTCAGCGATTTTTTTTTCGGGGTTTAGCAAAATTGTAGCAACAAAATTCCTGAGCCTCGCAAACCGCCTCTAGACATCCCGCAGGATAAGGGTTATAATTTTTGCT # Right flank : CTCCATTCAATTAAACGATGCAGTTAAGAAACCCGGTTTCTTGCCTCAACCCTTGCGGAAAACTTAAACTAAAATAGAAACCGGGTTTCTGGGTTAACTTTTAGGCTAAGAAACCCGGTTTCTTGCGTCAACCCTTGCGGAAAACCTAAACTAAAATAGAAACCGGGTTTCTGGCTTAACTTTTAGGCTAAGAAACCCGGTTTCTTGCCTCAACCCTTGCGGAAAACTTAAACTAAAATAGAAACCGGGTTTCTGGCTTAACTTTTAGGCTAAGAAACCCGGTTTCTTGCGTCAACCTTTGCGGAAAACTTTTTCTAAAATAGAAACCGGGTTTCTGGGTTAACTTTTAGGCTAAGAAACCCGGTTTCTTGCGTCAACCCTTGCGGAAAACTTAAACTAAAATAGAAACCGGGTTTCTGGGTTAACTTTTAGGCTAAGAAACCCGGTTTCTTGCGTCAACCTTTGCGGAAAACCTAAACTAAAATAGAAACCGGGTTTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCCCACTCGTTGGGGATATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 3009-408 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSK010000010.1 Planktothricoides sp. FACHB-1370 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3008 37 100.0 35 ..................................... GTCGCGATCGCGCCCGGTACAGCTACCGGCGGAGG 2936 37 100.0 37 ..................................... TTGATTCGATTGCCTTTAGTGATTTCTACGATTGGCA 2862 37 100.0 37 ..................................... TTAAGGTAAGTTACGCAGAGAATGCCTGCGGGAATAT 2788 37 100.0 35 ..................................... GCGATGATGGCCATGTACTAAATGGTAAGTTTCAC 2716 37 100.0 38 ..................................... ACTGGTGCCGCAACTTTAATCAGCGGCGATCGCTATTT 2641 37 100.0 37 ..................................... AAATCCCTCGATGTCTCTCACTTCCAGAGATTTAAAT 2567 37 100.0 35 ..................................... TTATCGCCACACGATACAAATTAACCAGCAAGTCA 2495 37 100.0 37 ..................................... CGGTCTTGACAATGCCATTCTCCCGATCGCCATATCT 2421 37 100.0 37 ..................................... ATTGGTTGGTTGTTGGTTTGAGTTAACAAATAAAAGA 2347 37 100.0 38 ..................................... CAATTCTTGGGGATTGCTTCACCAAGCAAGGGTGTCAG 2272 37 100.0 38 ..................................... GTATTATGTATCACGGGCTACTCATAACTTTCTCTCTA 2197 37 100.0 35 ..................................... ATATTATCACAGGTGAATTGAAAGCATTTGTTAAC 2125 37 100.0 34 ..................................... AGCTTGCAAATTCAGGGCTTGTCTGGAGTCACTT 2054 37 100.0 38 ..................................... AGTAGCGTGGACACGCACCAGCCCGGAAATAGCCGAAA 1979 37 100.0 35 ..................................... GAAATCGGCTGCGGAGAATATATCTGGCTTTTCGC 1907 37 100.0 36 ..................................... TGTTAATCAAGGTGAAAATATCATGGGCAGGAAAAA 1834 37 100.0 38 ..................................... AAATATGTTGCCAAAACTGTTAAATTAATGTACATTAA 1759 37 100.0 37 ..................................... CTTGACTTGCTCCAGTACACAGGGGAGCGGATCGGAG 1685 37 100.0 36 ..................................... CGGGAAAAGCTACACATTCATTGTAGGTTTGTAAGT 1612 37 100.0 37 ..................................... CTCAGTTGTAGTCAATAAAGGTGATTGTTTCTGCATG 1538 37 100.0 36 ..................................... TTTGTGGCTTCCTCTTTCAAAATCCCAGCAGACACA 1465 37 100.0 35 ..................................... TGCCTTTTTTTAGATATAAAAAGGGCGGCGCTGGC 1393 37 100.0 36 ..................................... ACTTACGCGATGCAAACCGCGATGATGGTCAGAAAG 1320 37 100.0 34 ..................................... GGCGAGATAATCTTCTCATCATGCCAACGAAAGA 1249 37 100.0 38 ..................................... TTCAATAAAATTTTCAACTTCAATTTTGGCGCGATCAC 1174 37 100.0 36 ..................................... CATTTTTACACTTATTACGGAGTCTAACATGAAATT 1101 37 100.0 37 ..................................... CAGAAATAAATGGTTAAACAATGAATAAAACAATGCG 1027 37 100.0 35 ..................................... CCTGAAGCTTATTCGATGTGGCTGAATAATCAGGG 955 37 100.0 37 ..................................... GCCATTCAGGGATTTGGCTGTCCCGTCCAACTCGCTA 881 37 100.0 34 ..................................... TTAGGTGTAGAAGTAAATTCAACTTTAATTCTCT 810 37 100.0 35 ..................................... GCCGAGGACAATCGGACTAAGTATTATTTATACAA 738 37 100.0 38 ..................................... AATCTGTGCTCGATGTATGCCGACATCTATATAGTGTG 663 37 100.0 34 ..................................... TCTCAGATGAAAGCTTTAACTAATCTTGTAACTT 592 37 100.0 36 ..................................... CGGATTTTTCGTGCCGCCAGAGTACCGCCACAAACT 519 37 100.0 38 ..................................... ACAAATTATCAAAGTGCATTGCAAGCTAGTTTTGACTC 444 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 36 37 100.0 36 GTTGCAACTATATTGAATCCCTATTAGGGATTGAAAC # Left flank : GAGACTACAGCGATAGATTTAGACCATGCTGCACGATGCCATTTATTTTTTAGCTACCTAAATCCTGTTCTAATAGAGGGGCAAGAAATTTTAGACGCCTATGAATACGATGACACGGTGATGTATTGACGACATCAATATCTTTGAAAGCTTGAAGTAGTAAAAGCGTTGCCAGCATTTTTTACAAGAAAAACGGTGGCAACGATATAAGAGGCAATAGTATGAACTTTTATCAAATTGGATATGCGATCGCTGCGGTCTTGTCCCAACCACCAACATTTTTCCCTGTGGACTTTGGGGTGAAAAAACGCAAGCAATGCCAAACCGGGTACACTTGCGGCGGCTCTTGTATTAGTACCAAGAAAAAATGCCGAGTGGCTTTGGCTGGAGATGCTAAAAATTTTGCCCAATATGTTCGCCAAAACAAGGGTAAATTAACAGCAATTCAGCAACAAAAAGCCAGGTCTCAAAATATTGGATTAAAAGCGGGGAAACGTATT # Right flank : CAACAAAGAAAGCTTTTGCAGAATTGGAACTAGAAGGTTGCAACTAAGTAGGTAGGTACAAAAAATCCTATGTAAAGATAAGTAAAGACCAGTCAGCTCGTTGGAGGAAAAAATTATGGGCGCTCGTCTGAGAGTATTTCTGACCCCGGAAGAAGATCGAACCTTGTTTGAACTTAGAAAGGCAACCACTCTACCTCAAAGGGTAAAAGATAGAGCCTCCGTTGTCCGGTTGAATGCTGATGGATGGTATGTTGAAAAGATTGCGAGTCACTTTAACTGGTCTGTTGAGAGAGTCAGGGACACACTGCATCGTTGGGAGAAGAAGGGACTAGGGGGACTGTGGGACAAACCGGGGCGCGGAAACAAACCGAAGTGGAAAGAGGCTGATATAGCTTATGTAGAAGAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTATATTGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 2 5919-3687 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSK010000010.1 Planktothricoides sp. FACHB-1370 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5918 37 100.0 37 ..................................... TGATGGTTGCAGCAGCCCATTGCCCCCCGCGCTTGGT 5844 37 100.0 36 ..................................... CCGAGCCTGGATTTGTGTACCTCATTGATATGAAAA 5771 37 100.0 35 ..................................... AAGCGGGTACGCTTGCCAAAGTTCGTCGGGAAATA 5699 37 100.0 37 ..................................... AAGCGGGTACGCTTGCCAAAGTTCGTCGGGAAATAGG 5625 37 100.0 37 ..................................... TGTTCGCCAACTATCAACAATCCTTTGTCGATTTTGT 5551 37 100.0 35 ..................................... ATCAAAACCTCTAATGATTGCCAAAGCTCTTTGGC 5479 37 100.0 38 ..................................... TTGGGTGCATCCCGACTCTACATGAGGCTTCGGGAATC 5404 37 100.0 34 ..................................... TTCGCCGACTCCGACAAATATTAATTTCCCTATT 5333 37 100.0 35 ..................................... CGACCGGATATCCTAATGGAGACAAATCTAAGTCT 5261 37 100.0 38 ..................................... CCAAAGCCTAGAATGACGAAATCAGATCGCTGGAAAAA 5186 37 100.0 35 ..................................... TTCGTTCGCTTGGTGTGGGCAATTAAGCAGAGAAT 5114 37 100.0 34 ..................................... AAATTCTTCAAAGTGACTTAGTTCGTGAAAAATA 5043 37 100.0 37 ..................................... TACTTCAAGAGGAGTTGATTAAAATATGACGCTAAAA 4969 37 100.0 38 ..................................... AGGGTAGGTAGGTAGCGAGTGGCAAGTCTGTAACCGAG 4894 37 100.0 38 ..................................... TCGCTTGACTTGCAAAAGCTTAAGGTTCCATGTCACGG 4819 37 100.0 35 ..................................... AAGCATTGGCACGAATTCGGTATAACGCACCGAGA 4747 37 100.0 37 ..................................... CAAGAATCCAAGATTCTTGGACAATTTCAGGCACTTA 4673 37 100.0 36 ..................................... TGAGGAATTCTATTTTCGCAACATTGTGCGATGGAA 4600 37 100.0 38 ..................................... TTGCCCGCGATTGCTGATGACCAAAGAAAGCAGATGGC 4525 37 100.0 34 ..................................... CGGCACCCGGATAGACCGGGTTTTCCCACCTTTC 4454 37 100.0 38 ..................................... CAACGAATGCGAGGCATGGCAGTGCCGGAGCCAGTGAG 4379 37 100.0 39 ..................................... ATAGAATGCGATCGCCGCCTCACCCTCACCCATCGGCGC 4303 37 100.0 33 ..................................... GCGGGCGATCGCAGCCCACCTTTCAGAATTAGG 4233 37 100.0 36 ..................................... AATTTACCAAATTGAAAAAACCACGGAACGCTATAT 4160 37 100.0 38 ..................................... GTTAACGACGCGGAACAGGCAACCATCAATCTAATTTT 4085 37 100.0 37 ..................................... GCCATTTTGTAATCGGCTTTGTATATACACACAAAAA 4011 37 100.0 36 ..................................... TTGGATGGCGATCGGGATAATTGCGATTGAATTAGT 3938 37 100.0 33 ..................................... TGGGCTAAGGTAGCCCTATATAGGCTGATTTGG 3868 37 100.0 35 ..................................... CAATCAGGGGGGTTTTTTGTTGCCAATCACCCCAT 3796 37 100.0 36 ..................................... AATGACCTGAGCCAAAGCAGCTTGACCGCCGATTTG 3723 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 31 37 100.0 36 GTTGCAACTATATTGAATCCCTATTAGGGATTGAAAC # Left flank : TGGACAACCGGGGAGTCGTGTTTGGAAACGATATCTGAGTGAAAATGCTCATGTTCCTGGGGCGGGAGTTGAGGTGATTCTGGCGGCTTTAGCCCAAGTTCCTCCCCCAGAGATGGCCGGTTTAACGGTATCAAATATTTGACAACGGTCTGAATCGGCTAGGTTATGGGGATGGGTGCTTATCGGTTTTGCGGTTGGTTATGGGCGGGGTATAATAGAGGTTGACCCGCAATCTGCGTCAGGGGATATTTGCGCGGAGGGGTGGGTGTAAAAACAGGGCAGGGCATTTTTTCCTCTGAACTGTTTATGGGGTCGAGGTTTGAGAGTTTTTGAGTCTCGAACCGATCCGCGCAAATCCTGAAATCCTTTGTGAGTCAGGGTTTTGGTTTATTCAGGTTTGAGGTCTGTTGACAAATTTGGGGGGTTGCATGGTATGATGAAGTCGATTCGCGCAAATGAACCTGGAAAATTAAATAAATCAAGGGTTCCGAGCCCCGGCC # Right flank : CTAAGCAAAAATGATTATTTATCAAATTGGCAAAAACAAAGTCATTCTGAATGTTTCTTCCCCAGATGACTCATCCGAAATTCAAATTGAAAACAATACAAATGACGAAGCTTTAAAGTGGCTAAAAGAAGATTTTGAACAAGGCTGGTATGGAATTCACGGCAATCTTCAGTCCTTAGAGACTACAGCGATAGATTTAGACCATGCTGCACGATGCCATTTATTTTTTAGCTACCTAAATCCTGTTCTAATAGAGGGGCAAGAAATTTTAGACGCCTATGAATACGATGACACGGTGATGTATTGACGACATCAATATCTTTGAAAGCTTGAAGTAGTAAAAGCGTTGCCAGCATTTTTTACAAGAAAAACGGTGGCAACGATATAAGAGGCAATAGTATGAACTTTTATCAAATTGGATATGCGATCGCTGCGGTCTTGTCCCAACCACCAACATTTTTCCCTGTGGACTTTGGGGTGAAAAAACGCAAGCAATGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTATATTGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 133823-126920 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSK010000008.1 Planktothricoides sp. FACHB-1370 contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================== ================== 133822 36 100.0 42 .................................... TCAGTGTCAATCGTTTCGCACAAAACTGTATCGTTTTGCTCT 133744 36 100.0 35 .................................... ACTCACGGGGAAGAGCTTAAAGGAGTTGTCATTCA 133673 36 100.0 35 .................................... GTAACAAAATCCATTTTTTCGCAAATACTCTTCAT 133602 36 100.0 40 .................................... TGATGAAAGGTTTTCCAGCAGGAAAATTTTTTCAGGCTTA 133526 36 100.0 38 .................................... TTGAGTCGATTCTTCCTGAGTAACAGTATATTCAACGT 133452 36 100.0 39 .................................... CGAAAGAGATCCTGCTGATCGTAAGAAAAGGCAACGCCG 133377 36 100.0 36 .................................... ATCGTTGGTATTCATGTTTGTTTCTCCTTTGTTTGT 133305 36 100.0 36 .................................... TAGAAAATTTCCCGATCGACAAAAAATCACTATTAC 133233 36 100.0 41 .................................... ATACGGTAAGAACTGTCTTTTTTTTTGTTCTACCAAAAAAA 133156 36 100.0 44 .................................... TCTAAGGAAAACAGCAAGTTTGCTGAGAACAGTCTGTGAATCAT 133076 36 100.0 41 .................................... CTGACAAAATTATTGTGAGGGGATCTAAGAATTAGGATATT 132999 36 100.0 38 .................................... CTCGATTATTTGATATAATCGGTAACCGTTATTTTCTA 132925 36 100.0 40 .................................... GCCGAGATCACACAGGTTTTCCGCGCTAGATTAAACTCTG 132849 36 100.0 40 .................................... GAAAACTCGCAGAATTTTGGTGTCAGAGACCGAACGGGCT 132773 36 100.0 35 .................................... GCTCGTTCTGTAGACGACCAGTGGAAGGGCGTCCA 132702 36 100.0 42 .................................... TAGCACATAACCGATTTTTTGGTATCAATTACTAATGCTTAT 132624 36 100.0 37 .................................... AGAGTTGCCCCTTGAGGCACAGGAGACATCGTTGCAG 132551 36 100.0 44 .................................... TTAAGTAAAAAGCTACACTGCTTCAGATTTACGGTTGTTCTTGC 132471 36 100.0 39 .................................... AGTCAACGATATTCCCGACACATACCGATACTCATTCCA 132396 36 100.0 40 .................................... GCAACCTACCTAAATCTAGAGGTGGAATTCCCAGACGGAT 132320 36 100.0 37 .................................... TTTATTCATTTTCTCTGGAATTCCATCAACGTTAAGT 132247 36 100.0 40 .................................... ACATTAAAGTTAGGACGGGTTGTACCGTAATGACGTTTAT 132171 36 100.0 43 .................................... TTAACTAAGCTAGTAACAGACTGGAAATAGCGAACAGAATATA 132092 36 100.0 41 .................................... AGTCGGTGTCTTCAAGAGAAGGTACAGCTTCTACAATGAAC 132015 36 100.0 35 .................................... CATTAGTAGCCATAGCTACCATACCGGCAACTGCC 131944 36 100.0 35 .................................... GACCTTAGGTCCTTGTCCTAGTTTTTTGAGACTAG 131873 36 100.0 43 .................................... GTGCCTTAATTTTGTCAAGGCAACTCAGTATGTTTTTCATCTC 131794 36 100.0 41 .................................... AAGCCAAGTAATAAATAATAAAAAAGCCAGATATTACTGGC 131717 36 100.0 52 .................................... TCCCATCATTGCCGTTCCTTTAAGTCCCAACGCTTGGGCTTCATCTTGACTC 131629 36 100.0 44 .................................... AAGGTTTTGAGTAACGCTTCTTTGACTATTATCGCGGTCACTAT 131549 36 100.0 40 .................................... TTGATAGCTCCGGCTTGAATGGCTTTGGCTCCTTGTTCCA 131473 36 100.0 37 .................................... AGCATGGCTGAATCCAACTAAGTCCAAGGGTTTACCC 131400 36 100.0 38 .................................... TTTTGAGTGAGGCAAAATATTCGTTTAGCTGTTCTTGA 131326 36 100.0 46 .................................... GGGAGCGTATCTGACGTTGTGTTTGAAATGTAGGTTTAACCATATA 131244 36 100.0 41 .................................... CTGGATGGATTGGAACCTGAGCAGACTCGTGCATTATCGGC 131167 36 100.0 41 .................................... TCAACTTCAATGGACGTTGATGGAGAGACTTCTTATGACCT 131090 36 100.0 38 .................................... CGAAGATATTTACCTTCTTCTCCAACCTCTAACTTATC 131016 36 100.0 39 .................................... CCATCCTCATCGATTAACGTAGGTCTGTAGTCATAAGTC 130941 36 100.0 40 .................................... CAACTCCGATGTCATCACCAGAGGAAGAGAAGGATTCGAA 130865 36 100.0 42 .................................... TGAAAGCCAGCTTCACATAGAAGCTTCCAATATTGAATGGAG 130787 36 100.0 39 .................................... GTACCCTATCAATGGTCGTCGTGACCAGAAGGGTTACGA 130712 36 100.0 38 .................................... AGCAAGCAAGTACACCTCCATCTCGAACTTAGTACGGA 130638 36 100.0 38 .................................... TAAACAGTGCAGACGAAATTAGAATAATCCCAAGAAAC 130564 36 100.0 40 .................................... TAGCGAAGGTCAAGGCTTGAGATACACCGGCAATCATTAA 130488 36 100.0 41 .................................... CACTGCTGTTCTTACCAGAGCGAGCTTTAGCTGTGGGGAAT 130411 36 100.0 40 .................................... TTGAAAGGTGATTTCCGTTCTTTGATTGATTTGCCTGTAA 130335 36 100.0 36 .................................... TAGGCAGTAAGTTTTCACTCATATCATTATTTTATC 130263 36 100.0 39 .................................... TCAAATGATGTTCTTCCACTAAACAAAAAAAGACCTACA 130188 36 100.0 35 .................................... ACTGCGTACTTACCGCCCTTGTGAACGAATGAGCT 130117 36 100.0 39 .................................... AAAAGACATTCACTATGGCTCCTTCCAGCGCGGGGTGCG 130042 36 100.0 39 .................................... AAAAAATGTTTGGGGCATTGGTTTATTCCTCAAATTTAA 129967 36 100.0 37 .................................... GTCTGACAGAAGAAGCATTGCGAAGCAAGCAGATAAT 129894 36 100.0 39 .................................... TGGTTGCCCATTGAATTCGGGCTGCGTTTTGGATGTCGG 129819 36 100.0 44 .................................... ATTAATGAAATTCTTATCGCCGCAAGAAATCGCCGAACTGGACA 129739 36 100.0 39 .................................... TCTCAGTATAAGGGTAGAAAGTTTAAAGAGAACTACAAA 129664 36 100.0 45 .................................... GTATGTTAGGCGGGGAGATTGCCCGCGAACAAGCAAAGGCTGGAT 129583 36 100.0 39 .................................... ATTTCCCTTTTTCTTTGTAGGTATTGGTGGATGCATCAT 129508 36 100.0 35 .................................... ATAACTAAACAATGGAAAGGCAGGACAATCACTCT 129437 36 100.0 49 .................................... CCACTTAGTATAGAAAGGCTTACCAAAACGTCCTTGGTTTGCTAGGTTG 129352 36 100.0 39 .................................... CCCTTCAGTGGATTGAGCGAAAGCCGAGTAGCAAGTATT 129277 36 100.0 41 .................................... GTGGATGCAACGGGAACGGTCCTGGTGGGCTGAAGAACCAG 129200 36 100.0 36 .................................... GGGAATGTTGAAGTTCCGGCTCCATTTCACTATTGC 129128 36 100.0 41 .................................... ATTGATTCTGAATATATGTAACTTTGGGATTCTTCTACCTT 129051 36 100.0 40 .................................... GTGAAGTTGCTATAGTCCCGTGTTTTAATATACTTTACTG 128975 36 100.0 38 .................................... TAATTGCTCGTTGAACAGTGTATTGTTCAGGTTTAGCA 128901 36 97.2 41 C................................... CGATATCGTTATCGAAACCAATACCAGCTTTATGTAACTGG 128824 36 100.0 35 .................................... TTCATCTTTAGAACTCAGACCATTGATGGAATTGA 128753 36 100.0 37 .................................... TATCTTCGGGAGGATAGGGGGACTGAAGCAACATCCC 128680 36 100.0 39 .................................... ATTGGTAGTACGAGACTCCTCATCATAGGAATCAATCAT 128605 36 100.0 37 .................................... CCTCTTGGATGTGGCTTTTGCCTAGTAGGAGTCCTTC 128532 36 100.0 38 .................................... GTTCTCCCGACGTATGCCAGGAAGGAATACACCTTCGT 128458 36 100.0 38 .................................... AGTTAATACAGACTACCTCATACGATGAGTTATCTTCA 128384 36 100.0 42 .................................... GGAATATCCTCCTCATTGGAGCCCTCTTCCATTAACTCTACC 128306 36 100.0 38 .................................... CCAAAGTACCCGAGATTTACTAAATCTTCTTTATTCAG 128232 36 100.0 39 .................................... CCTTAATTCTCGAAGTCTTGATATCTATCGAGTGATCGA 128157 36 100.0 40 .................................... GTTCCCCAATCATACCCTTGAAAACTTCCTTAGCCTTAGC 128081 36 100.0 39 .................................... TACCGGGAAGACCTTCCATAGCGCGAATAGCTACAGCTT 128006 36 100.0 37 .................................... ACATTTGAACTTCCTAAGTTTTAAGATTGATTAAGAA 127933 36 100.0 37 .................................... ATAGTTCAGTATCGAACTTTCCATTTACCGGCATAAT 127860 36 100.0 42 .................................... TTCCTGTCGCAGAGGACAGAAGAGCATCTTGTACTCGAAGGC 127782 36 100.0 43 .................................... GTCAGTGCATACTGCTTAAGAGTCTTCTTCTTACCCGCGTCCT 127703 36 100.0 38 .................................... CAGTGCTCTTTCGTGAAAGAAGGCTGATGTACTCTACT 127629 36 100.0 40 .................................... TTACCTGACAGGAGGTACACTCTTTACTGCCTGCTGGGAA 127553 36 100.0 40 .................................... TTAGGATAACTGTATTCGCGCTCGTATCTTTCTTGGCTGG 127477 36 100.0 35 .................................... GTCACCAGTCGATTTTCACTACAAGATACTACCGA 127406 36 100.0 37 .................................... GAGGCAGCTTTGTTACGCCATTGGTCCACCACACTGT 127333 36 100.0 44 .................................... GAGTTAGAGCGAGAAGTGGGTATTGTAGATTGAATAGTAACGAT 127253 36 100.0 39 .................................... CTGTCAACCAGTTTTAACCAGTTTGTCAGTGAACCGATA 127178 36 100.0 38 .................................... CAAAACCATTGTCAAAGTTGTTGTTCATTTTCTGTCAT 127104 36 100.0 35 .................................... GCAACATTTTTCAAGTCCACTGGACTTTCCGCCGC 127033 36 100.0 42 .................................... TAGAACTAAACGTAAAGCTTAAGGTTGGCAGTGGCAGCAATC 126955 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================================== ================== 92 36 100.0 39 ATCCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Left flank : AGCCACAGAAAGGTACTTAGCACAGCAACCAGACTGAGATGCGATGCGATCGCCACCCAACCCAGTTTCAACCCTTCACAGCGTAACTTTGGGCGTATCGTTATATGGTAAAATAAGTAATTATTCCCCGAACAGTTACTAGGGGGTAATCGGTCGGCTATCTTCGGGTAGTCGGCCACTCTTTTTTTCAGCCTAAATGCTTCAGTAAAATCTCCGTAAATTGCTAACTGTCTAATTTAGAGACTGCTGATTAATGATTCTGTTAGCTGTTATAAGTTTGTAAACAAACCAATAAACTATTAACTACCTAATAAGTAACTACCGCGAGGTTCACGGAAAATCGCTGTAACTTAGCTAATTCGTCGGGAACCTCGCAGCCTCTCTGGGTAAGGGTTTCAGCGATTTTTTTTTCGAGGTTTAGCAAAATTGTAGCAACAAAATTGGTGAACCTCGCAAACCGCCTCTAGACATCTTGCTGGGTAAGGGTTATAATTTTAGCT # Right flank : GCTAAGACAAAATTAGTGGGAGTTTTATATTAATGTTGACAAAAGAGTAGATTTCGCGTAATATATAATTATGGTGAGGCAAACAAACTGGGAGTTTACACCCCATGGAGACTCTATAAAAAGAGTGGATTTCGTGTAATATATGGTTGGGGGCACCTCTACCGCATAAACCCCCAGCCTGACGCTCTAGCAGTAAAGGCAAAGGCATTCCCCAGCCGAAAGCCGAAAAGTTACGGCAAAATCATTTGTCAGTTAAGACAAAATTAGTCGAAGTCTTATATTAATGCGGAAATCGAAAAGGCTTCGACTCCCCTCGACTCCGCAAATAAGAACTAAAAAAAATCAGAGACTTCCGTAGCGACAAAAGCTCTAAATCTTCAACTTTTGGAAAACTCCAAAGACACCCTTTTAAAACTCAAACTTGTGCAACAGGCTTACTCCCCACTCGCTGGGGATACTAATTGATTGGAAACGCCATGACCATCCTCAGAAATTTAATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 38990-40303 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSK010000013.1 Planktothricoides sp. FACHB-1370 contig13, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 38990 36 100.0 35 .................................... AATATTGCGAATAGTCGCTGGAGTAACGCCAATCA 39061 36 100.0 35 .................................... CTCATATAGCGCATAATTTCATTTGTGCTTTTCCT 39132 36 100.0 36 .................................... GAGTGAATTGAGGCAAAGAAATTCCACCCAATACAG 39204 36 100.0 35 .................................... GAAGAAATTAAGCAACGACTTAAGGTTTTGGGTAG 39275 36 100.0 34 .................................... GAGAAAACTTCTTCTTGAATTCCCTGAACGTTTT 39345 36 100.0 37 .................................... GCGACGGCATCAAAATATGAATCAATGTCAACTAGAC 39418 36 100.0 35 .................................... TTCAAAGCCTGATGGTTTAGCGCTCAATTCAAATA 39489 36 100.0 36 .................................... AATGTAGGTAAATAATATGCCAATCGGTATCGAATT 39561 36 100.0 35 .................................... TTGATTGATTGTTTGTGCTTTTTGGATAGAAGAAG 39632 36 100.0 36 .................................... TTTATTGAAACTGTTACTCAATTTAGCAGTCGCCCA 39704 36 100.0 33 .................................... AAGAAATGGGGGAGATGGCGAGTCTGCCATCCA 39773 36 100.0 33 .................................... TTGGGAAGCGCGAAATATGTGGTGACAATACCT 39842 36 100.0 36 .................................... TAGGGCAGCTTTATTCAAGCTTTCCCTCTGCTTTTC 39914 36 100.0 34 .................................... GGTGTGCGGAAAGGATGGCTCACCCCCCAGTACA 39984 36 100.0 35 .................................... GAAAACGATTTCCGAACCATCGTCGCGGTTTGCAG 40055 36 100.0 33 .................................... CAAAAATGCACAAATATCGCACGTCAAGTTTTC 40124 36 100.0 37 .................................... AGTTATTTCAAAGTCTGGTTCGTCCCTGTCAAGAAAA 40197 36 100.0 35 .................................... AAGCTTAATGACTGTCGCCGATTTTGTGTGGGTAT 40268 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 19 36 100.0 35 GTGCTCAACGCCTTACGGCATCAGAGGTAAGAGCAA # Left flank : TGTGATTTCACCATGAAAGTTAAATGAAAAAAAAGGACTTGGCTGTTGCCTTGTCCTTTTTTTTCGCTACTTTTTGTGCTCAACGCCTTACGGCATCATACCAAATCCGGTTGTTAAAACCCGTTTATCAGGTCAGATGTCATTCCCGCGAAGGCGGGAATCCACAAGCGTTTTAGGTAACGATCGTAGTCAGTATATGAGAACCGGATTTGGTATCAGAGGTAAGAGCAACGAATTTACAGCGGTTTTCAGATTGCTGAACCACGGTAGGACCCGCGCATTCCGTAGGGGCGTCCTTGCGGAGCATAATCCGTCAGGCTTTATGGCCAGAAAGCCCGTACATTTAATATTTTAAGCATTGTAGGGGCGAATGGCCATTCGCCCTGGTACGGGCGAATGGCCATTCGCCCCTACGGAATGCTTCGCCCCTACAGATGCTTTGTGGTTTACTCGCGGCAGATTTGCGCTATAAGTCAAACTCTAGGTTTCGGTTTGGTGGT # Right flank : AGGCATCAACCAAAACCCTTAAACCAACTGCTTTGCCTTCCAATTTTACAAGCACCTGCCAAAAAAAGCAATCCTACTGGCCAAATCATCACAAAACTCAACGATTCTGGCAAACGAGTCAACCGGAAATCCCCACAAATCATAGCTTTTCCCCTCTATCACAAAATTGCAAGCATCAAAGGGCAGGAAAAAAATCCTCAAATCCCTGCCCCTTGAGCATTTCCGACTTTAAATCACCAGGTCATCCCTTCACAAACAGCAATGCTTGCATCATCATAAAATCCGAAAACATTCTGGTTGGTCTGGCCAAGCCCCCTCTCGATTATAGGCCGGAATCCCTTGCACGCATTGGTTTGGCAGCCGAACCAGCAGCAAATCATCCTCTGCGGTCAAAATCTTCTCCAACTCCCAGCGCAACTTTTCCCGTTCTCGCTGAGACAGCCAACAACGGAAAATAGAATATTGCATCCGTTCCCCATATCCCTCCATCAGCTTATATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCAACGCCTTACGGCATCAGAGGTAAGAGCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 42864-33631 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSK010000032.1 Planktothricoides sp. FACHB-1370 contig32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 42863 37 100.0 37 ..................................... AAATCTCTTATCCATACCTTCGGGCCGTTTTCTCATT 42789 37 100.0 38 ..................................... TGACAAGATAGCTGAGGAACTTTTAGGCAAAATTGCAG 42714 37 100.0 36 ..................................... ATCGGGCAAGTACCGGCCCCCGCGAGTGGCTGTATG 42641 37 100.0 37 ..................................... CCCGAATTTATCGGCAAAAAACTCGATTGCGCGATCG 42567 37 100.0 37 ..................................... GAAACTGCCTTAAAAGAAGGCAAAAAAATCTTTTTAC 42493 37 100.0 35 ..................................... AGATATTTCCATCAATTTTATCAAAAATATTTGTG 42421 37 100.0 34 ..................................... ACAGTGTCGGCTACCGAGCTGAAACACAATCCCT 42350 37 100.0 34 ..................................... TGGCCAAAGCTATTTTAAGCAGTTTGGACAGATT 42279 37 100.0 34 ..................................... GAATCTTGCCATTGGTCAAAGTGCGCGATCGCGG 42208 37 100.0 34 ..................................... CCGCTCACTCCAACAGAATATAGATTCATTGCTT 42137 37 100.0 34 ..................................... TGATTAAATTATAGCTTGCCCAACCAAAAAGAAA 42066 37 100.0 39 ..................................... ATTTCTTTTAGCCCATATTCTAGATCCTTGTACAGACAA 41990 37 100.0 39 ..................................... CAGAAGCATAAGCATTCATGGACATACCCAAGTCTTCTT 41914 37 100.0 37 ..................................... ATCATAATTGATAGTGACTTCCATCGTGCAATCGCCA 41840 37 100.0 34 ..................................... AATCAAGCTACCAAGCCATGATGAAATTGTTGCC 41769 37 100.0 38 ..................................... TTAAGTATTTCCATTAGGATTTGATCGTTGGCAGATAA 41694 37 100.0 38 ..................................... AACTATCTTAGGATTCAAAGAATTTATCAATTATCAAA 41619 37 100.0 38 ..................................... ACTGGTGATTGAAGTGACAATCCGAGATTCACCACTTT 41544 37 100.0 40 ..................................... TTTACCTTCTAGTTGCCCGTAATCAGCGATCCGTACTTCC 41467 37 100.0 36 ..................................... CCTGCTAAATCAGTACATCCGGCAATGCTTGGAAGC 41394 37 100.0 38 ..................................... ATTTTGACAGTAAAATGGATCCATTTATATCATTACAT 41319 37 100.0 37 ..................................... CCTGCTAAATCAGTACATCCGGCAATGCTTGGAAGCG 41245 37 100.0 38 ..................................... TGGACTAGAGAGATAGGGGCGCCATTATCTAGAGAATG 41170 37 100.0 39 ..................................... TTAGACCTATTGGCACTGCCTAGGTAGCTTTGGCCTACC 41094 37 100.0 35 ..................................... TTTTTTGAGCGATCGCACCCGACCTCCTACACCCC 41022 37 100.0 37 ..................................... AGAATTACGCCTTGATAAGGCTTATAGCAGATTCTGA 40948 37 100.0 38 ..................................... AAATTAGCGGTCAACGGGCAACGCTCTAACGTCGAAGG 40873 37 100.0 35 ..................................... AGAACTGTACGAAATAATCGAATCTACTGATGATA 40801 37 100.0 37 ..................................... GGCAATCTGCAATCAATAAGCACTCTATAAAGAAAAA 40727 37 100.0 36 ..................................... GATTTTTCCGTGATGTAGCCATGTTCTACTAACTCC 40654 37 100.0 38 ..................................... AATTTGTTGGTTTAGTTGTTGATTGACCAATCCTAATT 40579 37 100.0 36 ..................................... AACCAATGGCATCACCGCCATCATATAGCTATTAGA 40506 37 100.0 36 ..................................... GGGCATCAAACAAGCCACTCTCTACCGCTATCTCTG 40433 37 100.0 35 ..................................... GTATTCGCTCAGTAACGCCGCCATTTTTTCCTTTT 40361 37 100.0 34 ..................................... CGATAGCCCTAACAGGTATCGCGAAAAAGCCGGC 40290 37 100.0 38 ..................................... GCAATCAAGTTGGATCGCCTTTTCCGTAATGCAGCCGA 40215 37 100.0 36 ..................................... TTTTATATTGTGTAGCATACCCATGAGTAGGATGTA 40142 37 100.0 33 ..................................... TAGGGCGATCTTTTCTGAGTTTAGCGATCGAAC 40072 37 100.0 33 ..................................... AATAGAAAATTTTGAAAAACTACCCTGCGAAAG 40002 37 100.0 35 ..................................... TTAAGTGCCAGAGATAACGGTACAAGGTAGCTTGG 39930 37 100.0 38 ..................................... ATTTGGGGGGCAATTTTTTTGCTGCCATAATATGAATT 39855 37 100.0 38 ..................................... ACTGGTAGAGCGCCTAGGCATCGCAAAAACCACAAAAG 39780 37 100.0 38 ..................................... ACTATTCCGTTATTGACGCGGGCGAATCTCACGTTAAA 39705 37 100.0 35 ..................................... GGTTGGTTAGTTGAATTGACATAAAGTAGGCTATT 39633 37 100.0 37 ..................................... TAACTCAACTTTGACCATGCCGCCGGAGCAATAGGTG 39559 37 100.0 38 ..................................... ACCCCACAAGTACGAACCGGGCGGCATTGACCAGTGGC 39484 37 100.0 39 ..................................... TGCCACTAACTCACCGGCGGCGGCGATCGCTTTTCCCCA 39408 37 100.0 37 ..................................... AAACTCTGAGAAAAATTGCTCTAGAGTCAAGACCGTT 39334 37 100.0 38 ..................................... TGATGGTTGCAGCGGCCCAAACACCCCCACGCTTTGTG 39259 37 100.0 38 ..................................... CTGATTACCCCACAAGACCTGATCGAATACGATCCGGA 39184 37 100.0 38 ..................................... AATTTGCAATCTCATAAAACCATGCCCTCAACGTTAGA 39109 37 100.0 38 ..................................... TGGTGGTAGCTTTATCTAGGTAGCAGTTAAGTCAGATG 39034 37 100.0 38 ..................................... TGAAGGCGCCGCCCCAACACAAGGCACCCCCGCCGGTG 38959 37 100.0 34 ..................................... TTTTCAAGACAACCAACTAGCCCGCGATAAATGC 38888 37 100.0 35 ..................................... TTTGGGGTTATGCCGCATCATCGTCTGGGATCCAT 38816 37 100.0 38 ..................................... TTTGATTTTCCGGGCGGATCCGAACAAAAAGTCAAGCA 38741 37 100.0 37 ..................................... TGGTTTTGTTGGAAGCAAAACCAGACAGACTTAAAAA 38667 37 100.0 37 ..................................... CAAAGCGGTAGCTAGATAGTGGGCTGCATCTGCGATC 38593 37 100.0 37 ..................................... ATGACAACAACCGAACGGTTGTTAACAGATTTAGTAA 38519 37 100.0 38 ..................................... TACAATAGCCCTGATTTTGGCTATGGGGTGAGGGCGTG 38444 37 100.0 37 ..................................... AAGCTAAAACATCAAAAAACGACCCAGAAAAAGTAAT 38370 37 100.0 38 ..................................... ATGGCGATCCGCGATATATCCGCCAAAGACTTAAGCCA 38295 37 100.0 38 ..................................... TTGGCAGTATTTCTTACCTGTAGATTTTTTATGGTTCA 38220 37 100.0 37 ..................................... TTTTGGGTGGATTACAAAAAAAGACTAGATGACTGGT 38146 37 100.0 45 ..................................... CGGTGTCTGTGGGGTCGATGCTTTTACCCTCATCAGCGATCGCTT 38064 37 100.0 35 ..................................... TTATTTTTAATAAAAATCTATTTTTTGTCGGAAAA 37992 37 100.0 37 ..................................... ATTTCGTTGATGGCAGAGATGATCTGATTTAGGCGAT 37918 37 100.0 36 ..................................... GTCGGACGGGATAGAGTCCAGAGCGGTAGCCAAGTA 37845 37 100.0 36 ..................................... AGAGCGCGGTCACAGATGACACTCGATCAACTAAAT 37772 37 100.0 37 ..................................... GGCAATTTGTAATTAATAAAACTTTACAATATATTGA 37698 37 100.0 38 ..................................... GTTGGCAGTCACATAACACGGCTGTAAAACTGCGAGAA 37623 37 100.0 37 ..................................... ATTTAGGGCATAAACAGCACTTAAGCAATCTTCAAAA 37549 37 100.0 34 ..................................... GCTTAGGCTCAAATTCTTTGGCTTGCATTTTTAA 37478 37 100.0 35 ..................................... TACTTTTCAATCTTTTCAAAAGTTTATTGGACTTA 37406 37 100.0 38 ..................................... TTTACCGCATAAATCGGAAATATTTCCGAAAAACGTTG 37331 37 100.0 35 ..................................... AATCGGGCTTACAACGTGCGATCGCTGCACTCAAA 37259 37 100.0 37 ..................................... ATGAGTACCACCCAGCAAGCATATCGGATTCATTCAT 37185 37 100.0 39 ..................................... TGAATATACGGTATTATATAAAAATTTCAATATTCCATT 37109 37 100.0 38 ..................................... GAACAGATCGACTTAGGACATATCAAAGAAGCGATCGC 37034 37 100.0 38 ..................................... CTTACTGAAAGCTTTAACCCGAAAATGCGAAGGGCCCG 36959 37 100.0 37 ..................................... CACTACCCGAACCGGAAACGGACGGACGCTGACCAGG 36885 37 100.0 37 ..................................... CTATATATCAGAGTTTCGACTGATGAACAGGCAAGCG 36811 37 100.0 38 ..................................... ATGGGGTGGGGGGCGATCGCTTAAAAAAAACCAAAAAG 36736 37 100.0 33 ..................................... AAAGCGTGTACGGGGTTGACTTTGACGCTGACG 36666 37 100.0 38 ..................................... ACCTTGCCCCGATTTTGCCCCTCTGATACGATCGCTTG 36591 37 100.0 38 ..................................... GGGGTGGGGGTGTATTCCTTAAAAAAAACCAAAAAGAT 36516 37 100.0 38 ..................................... ATCATCAGCAAATTGTTGAGCAGATAAGCGACTGTCAG 36441 37 100.0 38 ..................................... CAGGTTGACTCTGACCATGCCGCCGGTGCAATAGGTGA 36366 37 100.0 37 ..................................... CTAAGGCAATCATTGATATCTGGTAGTATTTAGCGGC 36292 37 100.0 38 ..................................... TTTGCTTGCCATGTTTGTATTGTAGCACAAGTTTAACT 36217 37 100.0 36 ..................................... ATCCGACGGGATAGAGTCCAGTGCGTTGGCTAGATA 36144 37 100.0 37 ..................................... ATCTGCTCTCATTCTGGTAAGTGGAACCGGCAACACA 36070 37 100.0 35 ..................................... GGTTGTTAGTTGGTTGCTGGGTGTAGTTCACAAAC 35998 37 100.0 37 ..................................... TTGAATTGATTTACCATTCAAAAATAATTGCCCTACA 35924 37 100.0 34 ..................................... ACAGAACTAGAACTCACTGAAGATAAATTTTCCG 35853 37 100.0 37 ..................................... CAAATCTCTTGTAGCTCTGGGAGATACTTTGCACGAA 35779 37 100.0 33 ..................................... TTCCTGGGGCAATTTTGGCAGCGGGCGATTTTA 35709 37 100.0 37 ..................................... GATCGCTGGTTTCGGGCGGGGCTGGAGAGAGCCGGTC 35635 37 100.0 38 ..................................... GCTAGATTCATTACAGAACTATCTCGACTGCGGGGATG 35560 37 100.0 34 ..................................... CCGCTCGCGTTCTCATCTCCACCCGAAGCCGCTA 35489 37 100.0 36 ..................................... AGCAACGGGCAAAATCTACCAGCGATCGCATCCCCA 35416 37 100.0 37 ..................................... GAGTTCCCGGAGAGGCCAACTTTAAATTTGTACTGGG 35342 37 100.0 38 ..................................... AAGAAAACATCTCTTTACGGTAAAAGCATGATCCGAGG 35267 37 100.0 33 ..................................... GAATCTGTAGTTTTGACTCTGGTGTGGGGTGTG 35197 37 100.0 36 ..................................... GTTTCGGGATTGTAGTATTCATCTCGATACAGCATG 35124 37 100.0 37 ..................................... GTCGAAGGCGATCGGTGCGGCTTTAGCAGCCGCCAGT 35050 37 100.0 36 ..................................... CTCCGCCGTGCCTGGGATTATTGTAGTGATCGCTTG 34977 37 100.0 35 ..................................... AAAAATTGTGTTTTATTGTGAAAATTATGGCTATT 34905 37 100.0 35 ..................................... ACGATCACATTCCCATCGGCGATCGCTAATTCAAT 34833 37 100.0 35 ..................................... TCAAAAAAAGAGTGGGATTTTAGTAAACCAGAGAT 34761 37 100.0 35 ..................................... GGGTGCGAAAAAGTTAGTCGCGGTGGCTGGCTGAT 34689 37 100.0 38 ..................................... GATCGCTGGTTTCGGGCGGCCCTGGAAAGAGCCGGTCT 34614 37 100.0 37 ..................................... CACGAGTGGGAATTTTTAGGCGAGATAGTGAGTCCCG 34540 37 100.0 37 ..................................... CAGACTTTTTCTGGTGGGGAAAAAGAGGAGGAATTCA 34466 37 100.0 36 ..................................... TAGAATATCAGAATCGCTCACCCCAGAATCCAGCAA 34393 37 100.0 35 ..................................... ACCTGAAAGCTTGAAAATTCGCTTTAATCAAGATG 34321 37 100.0 36 ..................................... TTCTCCGGCAAAATTTCCAAATAATTCTGCCTGTAC 34248 37 100.0 37 ..................................... TTCAGCAAATCGAAAGTCACCGAGTAAAAAATTACGA 34174 37 97.3 34 ...................A................. AGGTAATACTAAATTACTGCAATCATCTGGCTTG 34103 37 100.0 35 ..................................... ATAAATTCATCTCCTCCTTTGGAACAAATTTGGAT 34031 37 100.0 35 ..................................... TTTAATTCTTCTCAGATTAAATTTCAGTTTGACGA 33959 37 100.0 35 ..................................... GCCAACCTTGACTTTACTTAAAAACGGGGTGAATT 33887 37 100.0 35 ..................................... AATTACAAAATGACTCAAGCAAAAGCTTTGGCCAG 33815 37 100.0 36 ..................................... CGCGATTGAAGAAGACTACACCTTAAATTAATGAAA 33742 37 100.0 38 ..................................... GATGATTTCTTGATCAGCGTCCGAGCGGTCAAACTCTG 33667 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 126 37 100.0 37 GTTGCAACTATATAGAATCCCTATCAGGGATTGAAAC # Left flank : ATGCTCGCTGAGTGAGACGGAGTATGCGAAGTTACGGGCAAGATTGAGTAAGTTGATTAAGTCAGAGGAGGATAGTATCCGGTTTTATTTTCTTTGTGGCTGCTGCCAGGGTAAAATAGAACGAATTGGGGGCGAACAGCCAATGGATACGACGGTATTTTTTGCCTGATCCCATGACCGGCGCCCTGGAGTGGCTGGCTAACCGGCTTTCCCGGAAGCTTCGGTTTGAGGATGAGATGAAGCGGTAATTTGCGCGGAGGGGTGGCTGTAAAATAAGCCCAGGGGATTTTTTCCTCTGAAGCCTTTACAGGGTGAAGGTTTGGGGCTTTAGGATTGGTGAACCGATTCGCGCAAATGCTGAAACTCTCTCCCCGCTTAGGTTTCCCCTGATTCGTGTTTGAGGCATATTGACAAGTTTTGGGGTTTTCATGGTATGATTAACTCGATTCGCGCAAACGAACCTGGAAAACTAAATAGATTAAGGGTTCCGAACCCCGGCA # Right flank : AACGATCGCACTTATTTGGGCGCTACGTCCGATCGCCCAAGTAAACCTTGAAATTGTAGCTTTTTAAAATTGGTCAAGTAGTCGGTTTTAACCGCCTGTAGGGGTCAACGGCCGTTGACCCCTACAGGGATTTTAATCCCCGCCGAATTTTAATCCCCGCCGGATTTTAATCATCGCCGAATTTTAATCATCGCCGAATTTTAATCCCCGCAATCGTCGGTTAATTGCGGGGGTACATAAACCGCCAGAGGTTAAAACCTCCGGCTAATAGCGCAAGTCGGTTAAAACCGACTCTGGATTATTTAGAAATTGGTAATATTATTTACAAAACATTATGCAATTTTGGCGCTACATATCACCGTCTAAATAAACATTATAATTGTAGCAATAGGTTGTAAAATTGGTATTAAATGACTAATTTTTTTTTAGTTTTATCCGCAAATTTATGCCTAAATGAACCCATTTTCGTAATTCCCATACTCCCTTTCATTTGATTCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTATATAGAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 17687-12526 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSK010000044.1 Planktothricoides sp. FACHB-1370 contig44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 17686 36 100.0 40 .................................... TTGTTCTATTGTTGTTGAGTCAAATGCCCCATAGACTACT 17610 36 100.0 40 .................................... TCAAGCGTAACACCCTTTAAAAGGTGCTCTATTATAGAAC 17534 36 100.0 37 .................................... GGCAGATGCGATTGCATCCAAGATAAGGTCTAGCCGG 17461 36 100.0 42 .................................... AATACGGATCTGGGTGGTCAATGGAAGTAGACAAGTTTTCTC 17383 36 100.0 41 .................................... TTGCCACCTTAGTATATTCCATGTATGTCTCCTTGTTTTGA 17306 36 100.0 39 .................................... TTGCTCTTCTGGGATTGTGTCTCAGTATCTCCGTCAGAA 17231 36 100.0 40 .................................... TTTTGCCAATAAGTTCCATCAAATCAACGTGGAGTCTCTT 17155 36 100.0 38 .................................... ATGAACAGGCAAGTGAGGGAATCAGCATCGAAGCCCAA 17081 36 100.0 42 .................................... AACAATTTTATTTTAATCCGACCTATGCAGGTATCTATGACT 17003 36 100.0 38 .................................... AATGCATCCTCTATTACAGGAGCGTAAGAAATTATATC 16929 36 100.0 39 .................................... TTAAAATTAATGTTCTAAAGACAATGTCCTAAAGACATT 16854 36 100.0 39 .................................... GAAATTTATCAATTTCTCTAGATGAAAACAGTCGTCAAA 16779 36 100.0 38 .................................... TCAAACTTGTTTTCCCCCAAGTACCCATAAAATAGTTG 16705 36 100.0 38 .................................... CCACCTTAACTGGTCGCGATCGCGCAAAAGTTATCCCA 16631 36 100.0 37 .................................... GTTCCTGTCTGGATGCTATCGGGTGCGTTGCGGACAC 16558 36 100.0 44 .................................... TCTATTATTAAACTTTTTGTGATCAAAACTAAAGTTTTGATTGT 16478 36 100.0 39 .................................... GGGACATTCGCCCCACTTTTTCAGCGATTTTTTTGGGAA 16403 36 100.0 44 .................................... AGATTTTCTTGCAATTCCTTTCGGTCGCTCACACAAAAACTGCG 16323 36 100.0 40 .................................... GTCAGAGTCTTGGATTGTTCAGTTTCGGTGACTTTGTGAC 16247 36 100.0 42 .................................... CAGGCACAGCTATCAATGCCGCGATCGCGCACTTTGACCAAT 16169 36 100.0 38 .................................... TCAGTAACGATCGCTGCGGTGGCGGTATCGGTTGCTGT 16095 36 100.0 38 .................................... TTCGGGTCAAAAAATTCCCTAGCAACAATTCAGCCGCA 16021 36 100.0 35 .................................... AAATAACTGTTTAGGAGTCGATCTTTTGATTCTGT 15950 36 100.0 38 .................................... TTACTTCGTGAGCATCTTGTATCTGCTCCAAGTCTTGA 15876 36 100.0 35 .................................... CACGGGAAATCCCGTATTTTATCGTACTTATCTCC 15805 36 100.0 41 .................................... TGCTACGAATTCTTTAAGAGTTTGCCTGTGGCTGGCAACTA 15728 36 100.0 44 .................................... CTTTTTGCCAGTAAACCATTATGTCAGCATATTCTTGGAACTCA 15648 36 100.0 42 .................................... TCTTGAGATTGAATCTTTGTTAACGAAAAGAGAAAGAGCAAT 15570 36 100.0 38 .................................... TGTACCTGTTCTAGTGGTTGTCGCATATAGCGTTCCGT 15496 36 100.0 39 .................................... GCGAACCCGTCAAACTCAAACTTAGAGGGGTAACCGTAA 15421 36 100.0 37 .................................... TCTTCATCGACGGCAATTATGTCTTCAATTTTTCCAT 15348 36 100.0 39 .................................... ACAACAGCGATTTCACCGACGTTCGGTAGCCATTCTTGC 15273 36 100.0 38 .................................... GGATTCGCCATATTTTGTTATCAATGCCTAACGTTGTT 15199 36 100.0 40 .................................... ATTGTTTTTGGCGATCTTGACTCCGCAGGTAAACCCAGTT 15123 36 100.0 41 .................................... TATTGATTGGTATCCATGTTTGTTTCTCCTGTTTTGTTGTC 15046 36 100.0 36 .................................... TATCGACTTGCCAGAAAATTAATCTGGCTCATTTAA 14974 36 100.0 39 .................................... AGCGAGCTAACGCGATCGCAGAAGCGGCAATCACGAAAA 14899 36 100.0 44 .................................... GTGTTCCGGGGAGGTTGTGTCGTACAGTTGCGTGCGGAGAACAA 14819 36 100.0 37 .................................... AAACAGTCTTGACGTTGATTAGATTAATGAATAAAAT 14746 36 100.0 38 .................................... ACAGTCTAAAAGAAGATTGGCGCAACAACAAGAAAAGC 14672 36 100.0 38 .................................... TGGTTTGACGCGACTTTGTTGAAATAATTTAAAAATAA 14598 36 100.0 38 .................................... ATAGTCGGCGCTAAAGAGTTCCTTGCTTTTTGCCGCCA 14524 36 100.0 40 .................................... TCTCTAGAACTCTAGCTAAAGAGGGATTTGTTTCCTCGAA 14448 36 100.0 37 .................................... AATCGGGCGATATTTGATGAGGGTTTACTGCGGAAAG 14375 36 100.0 39 .................................... TCTTTTGATTTAAACCAACAGCCATTGGCAAATCTTGTT 14300 36 100.0 36 .................................... ATGACATCCGACGAAGAGCGTAAAACAAAATCTATC 14228 36 100.0 43 .................................... TTATACTCCGTAGGCGATAGTGAATCGCTGAAAAAATTTTTCC 14149 36 100.0 42 .................................... TTTATAGACTGGTCGATATAATTACGACAGAAATCTTTTCGA 14071 36 100.0 38 .................................... GACCTAATCCCGGACAAGACACTCACAGTGCTATATCG 13997 36 100.0 43 .................................... AAATTATAAGCCCATATCATTTCAGCCGTGCTATTAGGATTAT 13918 36 100.0 41 .................................... CGAAATGGATAGTTTTCATAGTCTTCTCCGATTTTGATTTA 13841 36 100.0 44 .................................... TTTCCCGGTGTCACCGGTGTCATGGGAATAACTTTCTTTGGCTG 13761 36 100.0 39 .................................... CTATAGAGGAATAAACATAATCAAAGTTAACGACCAAAT 13686 36 100.0 39 .................................... ACACTTGATTTTCGCAGCATTAAGCATTTTGACGATTGG 13611 36 100.0 38 .................................... AGGGTTGCTATTCATAAAGCAGCGCAAGATTTTTACCA 13537 36 100.0 50 .................................... AGTCGATAGCTAACGGAAGGTACTGTTCGCTCTTAAGGTTAACGATTTGC 13451 36 100.0 41 .................................... AGAGAACCTTCTCCTCTTTCTTTGTAACTGCTTCGGGGTTA 13374 36 100.0 38 .................................... GACTCTTGAGGCTTACTTTTAAAGCCTCTATTTCGCGA 13300 36 100.0 39 .................................... CTCATTATACAAAGTGTTATTGAGGTAGAGTTCTCGAAT 13225 36 100.0 37 .................................... CTATTTCGCGAGGCTTTAAATCTTGAAGCAGAAGATA 13152 36 100.0 43 .................................... GACCTCCTCTTGTTGAGAGAGACTTGACTCCGCTTAGTGCAAA 13073 36 100.0 39 .................................... AGTAATTGATACTAAAAAATAGAATTTGTGCTACAATTA 12998 36 100.0 32 .................................... AGTAGACGCGATCGCGGTGACGGTGGCGGTAT 12930 36 100.0 35 .................................... CGCAAGAGCAAGAGTTACTCCTTGAGGCATCGGAG 12859 36 100.0 36 .................................... AGTCGAACAATTTCGGATTCAAGTTTTTGCACGATT 12787 36 100.0 38 .................................... GTGGCGGTATCGGTTGCGATCGCGGTATCAGTTGCAGT 12713 36 100.0 43 .................................... GAAAGCGACTTCTATCATCGCTTTCTCTTTTTTTGTCAGATGA 12634 36 100.0 37 .................................... GCACTGGGAACTAACCAGAGGGCTCGTCCCGTGTATT 12561 36 91.7 0 ...........C................T.A..... | ========== ====== ====== ====== ==================================== ================================================== ================== 69 36 99.9 39 ATCCCCACTCGTTGGGGATATTAATTGAATGGAAAC # Left flank : TGTATTCCCCTTATCAAATTCGCTGATGTTATTTTATGTGGTGGTCTATGACATTCCCGATAATAAACGTCGTCAAAAAGTCCATGATTTACTGGAGGGTTATGGCAAATGGGTGCAGTATTCGACGTTTGAATGTGTCCTGAGTTCAGCTAAGTTCGAGGAGTTGCAAAAACGTTTGCGATATCGAGTGAAGTTGGAGGAGGATAGCATCCGCTTTTATCCTCTGTCCCGTCATACTTCGGGGCAGGTGGAAACCTGGGGGGTGGGGCCACCGATTACTGAGTTTCCCGGTTCGGTGATTATTTAGCTAGTAAGCTGGTCTTGCGAGGCTCACGGAAAATCGCTGTAACTTAGCTAATTCGTCGGGAGCCTCGCAGCCTCTCTGGGTAAGGGTTTCAGGGTTTTATTTTTTGGGGTTTAGCAAAATTGTAGCAACAAAATTGCTGAGGCTCGCAAACCGCCTCTAGACATCTTGCTGGGTAAGGGTTATAATTTTAGCT # Right flank : TAAATCAGTTAATACTGTCATAAAGGAGAAAAACTATGGTATGGTGGGCTGCTCTTTTGTTTACATTTGGACTTGTTACTGTGGGATTGTTACTACCGAATCCAACGATATCGTTAATTGTTCTAGGTTCAGCGATTTGGGCAGCGTTTGACTCGTCGAAAATTAATTTGCATAAGTACAAGTCAGGGATTTCTTGTAAGCCAGTAATACTTTTCATTTGTATAGTTGCACTTTGGATTATTGCTTTTCCCTGGTATTTGATTGTTCGCGGCAAAATTTTGGCAGGAAAGGCAGTTCTTAAAGATAAATTCCGCTAAGAACCCAGAAACCGGGTTTCTTCCCCAAATATTTGCCGAAGTCCAAAAATAAAATAGAAACCCGGTTTCTTCTTTGCATAAGGGCGAAGCATTCCGGTCATAAATTTCTAGTTTTTTCCCATAATTTATCCGCCGGAATGCTTTGCCCCTACCCAAATATTTGCCCAAGTCCCAAAATAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCCCACTCGTTGGGGATATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //