Array 1 17382-16377 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMMY01000004.1 Escherichia coli strain MOD1-EC7013 MOD1-EC7013_4_length_227130_cov_39.3085, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17381 29 100.0 32 ............................. CTCAGGCAAGGGCGGTGTAGGCAAATCGTCCA 17320 29 100.0 32 ............................. TATATAAATCGCAAAGCTCGGAAAATGTTTTA 17259 29 100.0 32 ............................. GAAAAAGGGTGGTTTCGTAATCGGTTAACACC 17198 29 100.0 32 ............................. AGGACCACTGGCACGGCGGCATTTATCCGGGC 17137 29 100.0 32 ............................. CGAACCGACTGACTGCCCGTTTTTAATCCAGT 17076 29 100.0 32 ............................. GGCCTCGCCAGTCTGCGTGATACCGTAGTGAA 17015 29 100.0 32 ............................. GCACAGGGCTCACGAATATTTTTTTAGAGCCT 16954 29 100.0 32 ............................. CTGCGACAGGTTGCCAGATGAGTTCACACTGG 16893 29 100.0 32 ............................. ATGGTGAGTGGTTGCATATGTGCCTGGCTATC 16832 29 100.0 32 ............................. GATTGTTTGAGATACGAGCAAAGGCGGGTGAT 16771 29 100.0 32 ............................. ACTGCTGCTTATTTGCGGCAGATTGCGCTGTG 16710 29 100.0 32 ............................. TATGATCAGAATCAGGGATACAGAGAGGGTAA 16649 29 100.0 33 ............................. AGCCTCGGCACACTCGCGTACTGATTCGCCCAC 16587 29 100.0 32 ............................. AAAACCCTAAAAATGATTTGCTGGATTCAGTT 16526 29 100.0 32 ............................. GCAAAAAATACGATCTCGCCGGTGTTTTCAGT 16465 29 93.1 32 .....A.......C............... TATAACCCGCCGTCTATTTCTCGTGTTATTTC 16404 28 82.8 0 .........A..TC...........-..A | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GAGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACACTGACCGATGATAAACCGCGAGTCATTGCGCTGCAGCCGATTAGCCAAAAGGAAGATGCTACTCGTTTATGTATCGATACGTGCATTGCGCGCAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTTTTTGTCGCCTCTGAAAACTCATCCATTTTGCCCATTCCGGACTAATCATTGTCATTATCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TTCAGGTATGTTCAGGCTGGGCAGTTTTCCGCCCGGCCTACCTCATTCACGCATTCGACCAGCTCTGGATCGAATCCGCATTCCCCAATTCCCCATGCATCACTTCATACGATTTTTTCAGGATTACATCAGTATGTTTGGTTAACTCCTTGAAAATGCCTTTATTCATCGCGTCGTAGCGTTTGGCATTGTTCTCAACAGGCATAAAGATATCTTTCACGCGAACCATTTTGTCGACAGCCGTTGCGTAATCCGGGTATAGCCCCAGACCTACCGCCGTATTAATCGCTGCCCCCAGGCTTGCACAACCATTAATGGCGTTACGGCGTGCCGGAAGGTTGAACACGTCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCGCCGCCAGTAATGATCACATGCTTTGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTGTTCTTCAGCGTCAGCGCCACGCTTTCCAGTATCGAACGATATATCCATGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 163257-162618 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMMY01000011.1 Escherichia coli strain MOD1-EC7013 MOD1-EC7013_11_length_171939_cov_40.3387, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163256 29 100.0 32 ............................. TTGTCGGCGGCGTGCATCATTGTGGCAACTTC 163195 29 100.0 32 ............................. GCTATGACGATCGCGCTTACCGTTGCATCAGT 163134 29 100.0 32 ............................. ATACTGCCGGATATAATCATTAACGTGCTCCA 163073 29 100.0 32 ............................. TCGCCCTGGATCTCGCTGGGGGTGTTCGATGG 163012 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 162951 29 100.0 32 ............................. CATTCCGTGCAGCGGTCTGAATAATTGCCGCG 162890 29 100.0 32 ............................. AGTAACGACGAAAAAATACAGGCACGGGCCAG 162829 29 100.0 32 ............................. GAAATAGCTTTTGCTGATCATCACGGTTTAAC 162768 29 96.6 32 ............C................ TTTCGCGGTTGCGCAGAGCCGCCGCCGAGGCA 162707 29 96.6 32 ............C................ GGTAAAAACACGGTCTGAACCGACATTCATGT 162646 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTTTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //