Array 1 3506-4327 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHB01000063.1 Streptomyces sp. NRRL S-1813 contig63.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3506 29 100.0 32 ............................. AGCATGCCCACGTTGACCGCCGCCGCCCTCGA 3567 29 100.0 32 ............................. TCCGGCTCTCCTGCGCCCCTCCACTAGTCCTT 3628 29 100.0 32 ............................. TCGGGGTGGCGCGGAAGGTCATCACGGACGCG 3689 29 100.0 32 ............................. CCACATGCTGGGCGAAGCCACCAAGCACCTCG 3750 29 100.0 32 ............................. TCGGCTTCCCGCTCGTCAACGGTGGTGCGGTT 3811 29 100.0 32 ............................. GCTCAGCTGGTCTGACCGACTGCGTACGGCGG 3872 29 100.0 32 ............................. GGAAAACTGCGGCTCTGCGGGTCGGGCATGGC 3933 29 100.0 32 ............................. AAGGTCCACATCGGCGACAAAGTCTGACGGGG 3994 29 100.0 32 ............................. TTCCAACCAGGTAGCACCCCATCTGACCTGCG 4055 29 100.0 32 ............................. AATTCCCTTTGTGCCAACCAGGTCCCGGGTCT 4116 29 96.6 32 ............................A GGCCAGTATTCCCAAGGGGTTGGAGCGAAGCG 4177 29 100.0 32 ............................. ACCGGTGGCGGCAAATCCCTCATGATCCGGCA 4238 29 100.0 32 ............................. GAGCGCGATTTCGTCGACGACGGCGAGAAGAT 4299 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CTCACAACGACCGACACCGACGACCCGCACTGTTCACGCGTGGTCGACCTCACCGACTGGTGACCACCAGCCACAGAGGGCCCCGCACCGGCGAGCGTGGTAAGCGGACCTCGAAGCCGGTCCCCTATGAGCAGGGCCCAAAGAACCGGTCTCGGCGCTCGCGTAGCAGTGTCAGCACCGGCCCGCGGCAGCTCGAACCGTCACTGCTCCGACAGCTACGGACGGCCTAGCCAGGTCAATGAAAGAGCCGCAACCACTTCCGCTCTGAAGGGTCAAGAAGGCTCCCCCGTACTCGTGGTTGCACCTTGGCTCGACCTGGGCGACATGGAATGGGATTAATTGCTCCTCGCACGTGCGGGGCAGCATCTTTGCGGCGTGGAGCCTGGCGTTGTTTCATGGCGCTCAACCGGGATAGGCAGACATGAATGTCGTTAATGTCGGGTTCGATGAAAGTGGTTCAAATCCGTGTCGTTCGCGTGTAACGATGCAGGTCACGAAGG # Right flank : CTGGAAGCAGCAGCTCTCCCAGCGTGACGAGGGCTGCTGCGGATAGGTCGGCTCCAGCCCCTCTATGCAACTGCCGGCGGACAGCTGGCTGTTCGTACTGGGGCGCGAGCCAGCTGTCCGCCGGCCTGCGCCATGACGGTCACGGATTTCCGTCCCAGGAGTGCAGGTCAGGTGGGGGCCTCCAGATTGATGCACTGTATAGACGTATCCGTGTAGCTACAGATCGCATATGGCCTCTAGACTTTCAATGACACCTAACGTGTCAGCGAGACCTTCGAATGTGTCGGCAATCCTTCGAACAGTGATCTTTGAGTAGAAGGAGTCAAAGATGATCAGTGAAGCCCAGATGCGGCTGTTAGCCCTTTGCTCGATTCGTGTGGAGGGTAAGAGTGTTGATTGGTCACTGCTGGCGCGCTGCGCGCTGCGCGGGCATCTCGATGACTTGTGTGATGGCTTCATCCCTGAAGAATCGTCGGCATCCAAGAGGTCCCTTGCGGTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6554-7839 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHB01000063.1 Streptomyces sp. NRRL S-1813 contig63.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================================================================================================== ================== 6554 29 72.4 24 .........A.........CCCC..T.GA CCTGGGCGAGATGGGCGTGGCCGC G [6569] Deletion [6607] 6608 29 86.2 32 .C...........C...A......G.... AACAGCAGCACGCGCGGCACGTTCTTCGCCCG 6669 29 86.2 32 .C...........C..........GT... GACCTGCGGAGAGTGCGGGGCCTGGGAGTGCC 6730 29 96.6 32 ........................G.... GTCACGCCGCCCACACCCTCACGCTCGGCGAT 6791 29 86.2 32 .............A..........GT..T GAGACCCGCGTCGAGGGTGCATGGCGAGGTGG 6852 29 89.7 31 .....T.......A..........T.... AACTCGCCAAGAACCGCGAGCTTGCCGCCGA G [6874] 6913 29 93.1 32 .......A................G.... GGCGACATCGCTTACTTCGGTCGTCTTCCACG 6974 29 96.6 143 .............C............... GTAGCGGCGGCGCCAGCACCTATTGCCCTGGCTGCTTCAGGGCGCCCAACTGGACTGGGCAGACGTGAACGTCGTGTATGCCGGAGTTGGTGAAAGTGGCTCGGAACCCCGCCGGGCGCGTGTGACGATGCAGGTCACGAAGT G [6996] 7147 29 100.0 32 ............................. CCAGAGCTGGCCGAGGAGGCCTTCAACAAGGT 7208 29 100.0 32 ............................. GTCCGGTGCGGGGAAGGACAGTTCGGTCCACT 7269 29 100.0 32 ............................. GGTCGCGGCCGAGTACGCAGTGCTGGCAGCAC 7330 29 93.1 32 ........................TT... GAGCGCCCGTACGACTGGGGATCGATTGTCGA 7391 29 86.2 32 ...T.........C..........TT... ATCAACGGCCGCTCGGCGCTCGTCATCTCCAC 7452 29 89.7 32 .............A..........GA... GTGCGCACCGACTTGGTGATCTGGGTGCGGAA 7513 29 86.2 32 ......T......A..........GA... TTGTACGGGAACTTCACCAGAGCCAGGCGCCG 7574 29 96.6 32 ........................G.... GTCTACATGCCGGAGGTCGAACGCGACCACGT 7635 29 86.2 32 ...........G.CA.........G.... TGCCGATGCTCATTCGGTTCGCCTACACGTGG 7696 29 82.8 35 .....G.....G.C..........GT... GTCCGCCACCACGGCGCCTTGAGCCCGGCAGATTG 7760 29 72.4 22 ..C.C....C.C.........G..GT..G CGATGATCGTGGTGCTGGAATC Deletion [7811] 7811 29 82.8 0 .............C.T.T........GT. | ========== ====== ====== ====== ============================= =============================================================================================================================================== ================== 20 29 89.2 37 CTGCTCCCCGCACGCGCGGGGATGCCCCC # Left flank : GAATAGCCATACCGTCTCATGCCTCGGCGCGTGGCGGAGTAGATCACCTGAAGATGGTGATAGGTAGCGTCGAGGGCATGTCCGGTGATTGGGATTTCGAAATATTACGAAAGAATTCCTCCACTAAGGCTGCCGACCGAAGGCGGCGGATCGACCCAAACCTCTTCGCGTCTGACGCATCTGTCGAAGGTAGGAGGGTTTTACTCTTAGATGACACCTTCACCTCTGGCGGCACAATGGCCAGCGCCGCATATGCTTTGAAACAGAGCGGCGCCAGGGTGGTTGTGGGGTTAGCGTTTGGCCGGCAGCTCGCGGCCGATTGGGGAAACTCTCAGAGTCTCATAGCAACGCTTCCATCCCGCACGCTGGATCTGAGCGATTGCGCCGTCCACGATAGCTCTCCGCCTTTCTTCGGATAGCTGGCTACCTTTCCTTGGCCGCCGCCGCCCGCACCGGTAGGGATAGCTCCTGGTCCCGGCAGCCGACCACACGACTTCCCT # Right flank : CCAATCGCGGTGACTAGGAGCATGCGCAGGGCCGCGTGCGGGCGGACTGCCGGGTGTCGGCGGGGCGGGGGCGAGAGTGGGGTGTCAGTGCCGTGGTAGCTGGGAGGGGCGGCGTCGCCGCGCTCGTGGTTTTGTCGGCCAGTGTGCCCAGCGCAGCGTTTCCGCCTCGCCTGGTGGTAGTAGCCCTGCGCCGATGAGGGCTGCCCGGCCGGCCTCTTGCCCCGCTATCCGGTAGCTGTAGTCGGAGGAGTCCACCTCGTGGTAGGCGCCGTCGGTTAGTAGCACGGCGGCCGATACTCCGTTGAGCCCTTCCAGCAAGCCGGCTCGCAAGGCGGGAAGGAACTCTGGAGGCAGGTGCGACTTCGGTACGACGTTGAGTAGTTCAAAGTTTCCGGCAGGGCCTGGTGGTTCGAAGTCGGCAACAATGTTGGCGTACGAGCCGCAGCCTCCGAGGTTCAGCAGGACGCGGACGGCCACGTCGGGCACGGAAGCAGGGAGGG # Questionable array : NO Score: 4.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:-0.57, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGCCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [16-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 8445-8778 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHB01000063.1 Streptomyces sp. NRRL S-1813 contig63.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8445 29 100.0 32 ............................. TCGCCCCGGCCGCCGAGGACGATCGTGGTCAT 8506 29 100.0 32 ............................. TCCTCGCCGCCGTCTGGCCCGACGCTCTCGAG 8567 29 100.0 32 ............................. GGCATCCGGTCGGCGATCCCCGGCGTGCAATC 8628 29 82.8 32 ...........G.C....A.....TT... ATGGTGGAGATGGCCGTATTCACGACGAGCAC 8689 29 86.2 32 ...........G.C..........TT... GGGGTGTCGGCAAAGGAACTTGTCGACCCCAC 8750 29 96.6 0 .........................T... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.3 32 CTGCTCCCCGCACGCGCGGGGATGGCCCC # Left flank : GGGCGGCGTCGCCGCGCTCGTGGTTTTGTCGGCCAGTGTGCCCAGCGCAGCGTTTCCGCCTCGCCTGGTGGTAGTAGCCCTGCGCCGATGAGGGCTGCCCGGCCGGCCTCTTGCCCCGCTATCCGGTAGCTGTAGTCGGAGGAGTCCACCTCGTGGTAGGCGCCGTCGGTTAGTAGCACGGCGGCCGATACTCCGTTGAGCCCTTCCAGCAAGCCGGCTCGCAAGGCGGGAAGGAACTCTGGAGGCAGGTGCGACTTCGGTACGACGTTGAGTAGTTCAAAGTTTCCGGCAGGGCCTGGTGGTTCGAAGTCGGCAACAATGTTGGCGTACGAGCCGCAGCCTCCGAGGTTCAGCAGGACGCGGACGGCCACGTCGGGCACGGAAGCAGGGAGGGCAGCCATCGACATACGGTACGCACAGCTCATCTGCACCAAATGCCGGAGCTGGCGAAAGTGGTTCAGAACGGTGCTGCTCGCGGGCAACGATGCAGGTCACGAAGT # Right flank : CGTCAGCGAGAATCCGCGGAACGGGCCCGCGCTCACGCAGAAGCCCAGGTCACAGGCTCGCTGATTATGGCGGATCCGCCAGAATCAGAAGAGTCACCGGAAGAACGCACGTCGCGCGCGAAGGCTGCCCGATCCGTGGGTGCATCACCACGTGCTGTTCAGCGTGCCAAAACGGTTCAGACCTACGCACCGGAACTCGTGGATAAGGTCCGGTCCGGCGACATGGCCCTGGACCAGGCGGAGAAGCAGGTCCAGCAGCGTCGGCGAGCGATGCCGGAAGACGCCCCAACTGAGAAGCCCAGCCCGGTCATGCTCACGCTGCGCGCCCACGACGGCACTGAATACCCCTACCCCAGGCCCGAGGCGAAGGCTACGTTCAATAACACCGACGGCGACGGAATCTCCTGGGCCCGGTGGTCATGGAACCCTGTCACCGGCTGCCTCCACGGCTGCGACTACTGCTACGCACGCGAAATCACCATGCGCTTCAAGCAGGTCAA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //