Array 1 24-1114 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWYT01000034.1 Olavius algarvensis spirochete endosymbiont isolate 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 24 33 100.0 33 ................................. TTTTCTATACACTTGCCAAAATCCCGGTACGCT 90 33 100.0 31 ................................. ATTTGATGCCTCGAAACTCTCCGGATGTCAT 154 33 97.0 34 ................................C AGTTCCGGATCACCCTGCTGATCAGTAGGCGCTC 221 33 97.0 33 ................................C CTGATTAACGCGCCTTGCTTAATTTCGCCCGAT 287 33 100.0 34 ................................. TTTTTTTGTCCCGGGCCGGGTTCCTCGTCGCGGT 354 33 97.0 34 ................................G GGATCTTCGAGGGCGGTAGAACTAGAAACGGGGA 421 33 100.0 34 ................................. AAAAATCGCTGAAAATATCGCTAGCGGAATCGAT 488 33 97.0 34 ................................G AGGATTAAGTCTTCTATCTCCTCGGTGCGATAGT 555 33 97.0 34 ................................C ATAAAACCCCGCAACTATTGACAGGTTAATAAGC 622 33 100.0 34 ................................. AACACAATGAGTTGGGAAGACCCCGGTTCAGGGC 689 33 97.0 31 ................................T GTCCATGGATCCTCAACTCAGCCAACACCTT 753 33 97.0 33 ................................G AGATATCTTGAATTCGCCAGCCCAAGACCGCCT 819 33 97.0 32 ................................C CGTTGCCGGACTCGGCCACGGGAATTGATGCA 884 33 100.0 33 ................................. TTTAATGCAAGATAAAACAAATGGCGCGGAGTC 950 33 97.0 33 ................................T CAGGACCGGATCAATAGGGGTAAGTTATAATAC 1016 33 97.0 34 ................................T ACTAGTCCATTTTTTTCCAAGTGCTGACGCGCGA 1083 32 97.0 0 ................................- | ========== ====== ====== ====== ================================= ================================== ================== 17 33 98.1 33 GTCGCACCCCTCGCGGGTGCGTGGATTGAAACA # Left flank : GCATAAGTCGAGCCATCAGGCGCG # Right flank : | # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [15.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 26073-23681 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWYT01000181.1 Olavius algarvensis spirochete endosymbiont isolate 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 26072 36 97.2 35 ...................................C GCGGTAGGACTGTCCTGCCGGTTGTGGATTCGGCA 26001 36 97.2 34 ...................................C ACCGGCGCAGTTGTCTCGTTGCCTCGCACTATAT 25931 36 100.0 35 .................................... CACATGCAACAGTGCGGGCACAACGCTTATCGCCG 25860 36 100.0 36 .................................... GACTGCGTGAGGGAAAGGAGATACACAGCGATGGTA 25788 36 100.0 36 .................................... CTGAAAACCAAGCGCGAAGAAATTCGCAAAATGAAT 25716 36 100.0 36 .................................... CTGGTTAAGCGTATCCATCTCAGACGGAGTCACCCG 25644 36 100.0 35 .................................... GCTGATCCGTGGGGCGACTGGTCAAGTGGATATAT 25573 36 100.0 36 .................................... ATTTTGGGCGAGATCGGCCCGATAAAAAGCTTAATT 25501 36 100.0 36 .................................... GAGTAGAGCGCCGGACGGCTGACAGCATACGTCGGA 25429 36 100.0 34 .................................... CCCGTATCGATTACCGATTGCACCTTGCGCGACT 25359 36 100.0 35 .................................... ATAAGCGCGTGGGTCGACTAGATGTAAGTCTGTCG 25288 36 100.0 34 .................................... TCATGTACTATATCGGTAACAAGATCAAATATAC 25218 36 100.0 35 .................................... CTTGGATTGCTGATCATGTTAGCCGCGCATAATTG 25147 36 100.0 35 .................................... GATCAATCAAATAACAACAGCTTCATATCTAAACA 25076 36 100.0 35 .................................... GATTTGCCAAAACCGGGGGAATGGCGGAATCTTCA 25005 36 100.0 34 .................................... AGCATAACACTATATATATCTATTTATCGGCCTA 24935 36 100.0 37 .................................... CATATCGGAGCGGCACTAACAAAAAACGCACTTTCAA 24862 36 100.0 35 .................................... AATTTAGAAGTCCGACATAGAAATAGGGGTGAATG 24791 36 100.0 36 .................................... ATATCCAGGTCCTGGCGCTCTGCCTCGCAAACCCGC 24719 36 100.0 34 .................................... GACGGGGAACCCTGAAAAAAAACCAAAAAAATCA 24649 36 100.0 35 .................................... GAGGCGGTCTTAGGCTGGCGAATTCAAGACATTGC 24578 36 100.0 36 .................................... GAGATGAAGTTGCAAGTATCCCATTGGAAAAGCTAA 24506 36 100.0 36 .................................... GTTTTGAGCCGGATTCAAGGAGTGCGACAATTCACT 24434 36 100.0 37 .................................... GGCAAGTCAAATCCCTCAAGCACTAACTTGCACGTGA 24361 36 100.0 35 .................................... GGACTTCAAAGTCTTCAGCGTCAAATCCGTCTTCA 24290 36 100.0 34 .................................... AAAAAGACCTTAAAAGAGATAAATTATTAAATTA 24220 36 100.0 37 .................................... CAATAAGTCACAGGAAAAGTATATCGAGAACCATTTT 24147 36 100.0 37 .................................... GCCGATACGCTGGTCTCGGCCTCGATGTATACAGTGA 24074 36 100.0 34 .................................... GTTTTTTTTCATCAAAATATTACCCCTGTCTTAA 24004 36 100.0 36 .................................... CCAGGAAAATCGATTTGCCCGCGCCGGTTGGTCCGA 23932 36 100.0 37 .................................... GGCAAAAAGTTGGACGCCTGACGAGGGTGTCGCCAGG 23859 36 100.0 35 .................................... AATAACACACGGTTAGTTAATACAGGCGCATTCTA 23788 36 100.0 36 .................................... CCCATAACTCCCGTAACTATCACCGTAAGTTCCTGC 23716 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 34 36 99.8 35 GTGTCAGTCAATTAACTCAATTTCAAGCGGTGCGAT # Left flank : ACCCCGGATAACTTGCTTGTTGAAAAGGGATTTGCGTCCAGCACGGCCTTCAGTTCCTTTGCAGTTCGAAGAACAACCTCGGTTTTTATTTCTAATTTATCCGCTAGAGCTTCTTCCAGGGCTCTTCGGATTGCAGTTTCAGCGAGATTGCTATCGAAAACAATATTCCCACTCTGAATGTAGGTACGCACATTCTCAAGGCCAAGTTCAATACACAAGTCCGACAGAGTTTTCATGGAAAGCTTGCCTGTACCGCCAACATTCACAGCCCTGAGAAGAGCTATGTATCTAGTCACTGCCTTGTTCCGTCAACAGAAGCACCCCCTTATGGGAGCCAGTTTTTGATTTAAGCCACCCAAACCTGGGGAAGAGTCCTTTTTGTACTGAATTTGAGTATCCAAAAAACTATTCTATCTGATTTTATGATTGTTGATCAATCTGCGATTTCCTTCTCAAGCGGTGCGATATCGCACCGTTAGAAACAAAACCGAAGAAAAAAC # Right flank : ACCGGGCTTCTAATTCCTTAGCTGCCCAGTCTTTCAGGGCAGATTCGCGAGCCCTTCCACCAAAACAGCACTTCGCACTACTCGCAAAGCTCATTTCAGTTAGGCTAAGTCCTTTAGAGTAAAGGTTTACGAGCACACCCCGCCTCCCCATGCACAAGCTCAGCACTCGCAATGTCAAAGAGCGCTTGATACGAAATAATTGACTTCACGGTGCCAAAAGCCCATTGAAGGGGAAGACACATGCCGTGAAAGAAACAGTTCCTATAGAACTGAAGATAAATGTACATGCTCTCAAGTTTTTTGTCAAGGCTAGATGATAACAATGCGCTCATTTTGCATATTGAGAGACTGCCCTATAACCGTTGTGGCCGCTCTTGCGGCCTTCTCGTTCGTACCCATGCTTATTATCAACACCTGATCTTCCTTTAGGTTTATCTCTTCTTCAATGTCTGATTGAAGCCTCACTCGGTCTATATCTTTTAAAACACAGAAAAATATCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCAGTCAATTAACTCAATTTCAAGCGGTGCGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 2860-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWYT01000155.1 Olavius algarvensis spirochete endosymbiont isolate 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================== ================== 2859 33 93.9 33 .....C..........................G CGTAACCTCGGTGTATTGTGGCGACCTTGTTTC 2793 33 97.0 32 ................................G GGTACTTGGGAAGCCTTAAAACGGCACAAAAA 2728 33 97.0 33 ................................T TATAATAATAAGAATGCCAAGCACTATATCGAT 2662 33 100.0 37 ................................. TAGACCGGTGCGATTATGTCGATATCCAGGTCCTGGC 2592 33 100.0 33 ................................. TTGCGATTGGAAAATTTGTTTTTGACGTCCGAA 2526 33 97.0 32 ................................C CCACCGACATCAGCTGGCCACCGGTCGAGCTC 2461 33 100.0 36 ................................. GAATATAAGGCAATCGGATCAAGCCGAAAAAAGCAC 2392 33 97.0 34 ................................T TTACTATACATATATTTATATATATAGTAATGAT 2325 33 100.0 33 ................................. AGGGGTGCCGCTATATGTGGTGTTAGCAAGTAC 2259 33 100.0 35 ................................. TAACACAACGGACGAGGATTACCCACTCGGGAAAT 2191 33 97.0 35 ................................G GGGTGGATATAGACCCGGCCTGCGAATATCCTTAT 2123 33 97.0 33 ................................G CATCGGCGCACCTACTATATTATGCCGTGTCCA 2057 33 97.0 34 ................................T GTGCTGCGCCCTTCGACTACTAACGCTGAGCGAT 1990 33 100.0 32 ................................. ACGCCAGAGACCTTAGACGGCTCGCCGATACT 1925 33 100.0 32 ................................. TAGCAGCGTGTTTGGGGTCCAGCGGCTCGGCC 1860 33 97.0 33 ................................T TATGCTGATCAATCCTTAGCTGCTTGATGTCTT 1794 33 97.0 34 ................................G CTGATCTCAACCTTGAGCTCGTAGATTAGATATT 1727 33 97.0 32 ................................C TTTCCCGTCAGACGCAATCCCCAGTCATACCC 1662 33 97.0 34 ................................T CAGCCTAGGTAGAACTGATAATAGTATCTCTGGC 1595 33 100.0 33 ................................. TGGTGTCGTGACCGTTAGGGTCCCTAGCTTGGC 1529 33 97.0 42 ................................C AACGTCTCCGATCATCAAGATTGACTCTTGGGCAGTCATGCC 1454 33 97.0 32 ................................C CCGCCAACATCAGCCGGCCACCGGTCGAGCTC 1389 33 97.0 35 ................................T CGGGGCTTGCTAATTTTTGTCCGGCCGGCCAAGCC 1321 33 100.0 34 ................................. CCGGCTAAGTTGATTTTTAGCCCGTTGCGCTGTT 1254 33 97.0 33 ................................C AAAGCAGCGGGCCTATGCTCCCCCCGCTCGACC 1188 33 100.0 33 ................................. AATTCAATCAGCGAAAAATTCAATTAAGGAAAC 1122 33 97.0 34 ................................T GGCGGGACTGCCAGGTCGCCAGCGGACTGCGAAT 1055 33 97.0 33 ................................T GTGAAGCTTGGAGTGTAAATCTTTATTTTACAC 989 33 97.0 33 ................................G ACCCCTGCGCGGATCAAATCTGCGGCGATTAAC 923 33 100.0 33 ................................. AGGCGGATCTGACCGCCGAATTGACCGCATATT 857 33 97.0 34 ................................T GGGGAAATTCGGGCTGGCATGCTAGTTGGACGGA 790 33 97.0 34 ................................T CTTAGCGCCTTGATCATCAGCGCTATCATACCGC 723 33 100.0 34 ................................. AGCGACAAGTCGAGGACTTGCAATCCAAGTTGGC 656 33 97.0 34 ................................C CATATATGGATAACGGCGGCAGCGGGCAGTGGGA 589 33 100.0 33 ................................. GATCTACAATTACGAGACGAACAATACTTGCAA 523 33 100.0 34 ................................. AAGAGAGCGGTGGATCCAATTAAAAATGAACCGT 456 33 97.0 35 ................................G CGCCTACTGAGGCTATAACCTTATCTATTGTTCGT 388 33 100.0 35 ................................. AGGGTTATCATTTCCAAAATCCGCCCAAGGTGACA 320 33 100.0 33 ................................. AAATTAATCCTATCAACATAGACTGTGACTGTC 254 33 97.0 35 ................................T TTATCGGTGTCTTGCTCGTTGGGTATTCCGCCGGT 186 33 100.0 34 ................................. CAAGGGCCTGGAAAAACCAAGAACGGTCAGAGAT 119 33 97.0 32 ................................T GTTCGTTTTGCGAGATCTTGTATCCGCCAGCC 54 33 97.0 0 ................................T | ========== ====== ====== ====== ================================= ========================================== ================== 43 33 98.1 34 GTCGCACCCCTCGCGGGTGCGTGGATTGAAACA # Left flank : TGAAGCCGCCCGAGTAGCTCGACCTAATAAGGTCCATTA # Right flank : TGAACTTTGCCGCATAAGTCGA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9640-11804 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWYT01000004.1 Olavius algarvensis spirochete endosymbiont isolate 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 9640 33 97.0 32 ................................C GAGACAACGCGGGGGGCGAGTGGGTTACCGTT 9705 33 97.0 34 ................................A TAGATTATGTATTGACAGTCGAGCGCGCCGCCAA 9772 33 97.0 37 ................................G ACGGTATATGTACTAGACATAGATCACCAACTTTCGC 9842 33 100.0 34 ................................. CGGATATACGAGATACGCTAATAGATCAGATCAC 9909 33 97.0 35 ................................A AGGTTATAACTCGACGACAAAATCACATCATTAAC 9977 33 97.0 33 ................................A TAATTTAGCTAACTTGACCCCCGACGACAAATT 10043 33 97.0 32 ................................A TACTGGACCGCCCCGAGTAGATCGGGCCCGCC 10108 33 97.0 33 ................................C TACAAGGGATTACTGATCGGATAGCAGATACTT 10174 33 100.0 34 ................................. GAGCTTGATAATATTGTCTCGGTCGGCGGTCGCA 10241 33 97.0 32 ................................G TGCAACTCGCCAGATCCAATTTCGCGCCCCTC 10306 33 100.0 32 ................................. GCACGATCCAGTCACTTATTCGCCGGCCGCCG 10371 33 97.0 34 ................................A TTATTAATATTTTCGTTCTGGTCCTCGGCATCCC 10438 33 97.0 38 ................................G CTTGAGAATTTTCATCAGTGGGTGAGGCTCTCCGGGAT 10509 33 100.0 35 ................................. TAAGATCCGTGGTTCGGCTGGCATTTTGTTTAATC 10577 33 97.0 32 ................................C GCCAAGTTGCCAGACTCGCCAGATTGCCTGGC 10642 33 97.0 32 ................................A TCAAAAAACGCCGCGAAAAACCGAGAAAACCC 10707 33 97.0 34 ................................C CAAGTCTCGATGTCCGCCTTGATATCTGCTCGGC 10774 33 100.0 32 ................................. GGGGCCTACTTGGCCAGTTGAACTATTAGGAT 10839 33 100.0 34 ................................. TGCCCGCCGCAACAATCCGCCCAGAGGCAAGGAT 10906 33 100.0 36 ................................. CCTAAATCCTGCCTGCTGCAGGCCGTGTCTGACGCC 10975 33 100.0 33 ................................. CCGCAGCCGGAAAGCAGATGGAACAAAGAGGAC 11041 33 97.0 33 ................................A GCCGGGACCAGCGATAAAGGTTTTGCGGATGGT 11107 33 100.0 33 ................................. AAAGGGGCTCCACGGCAGTTTCGCACTGCGAAT 11173 33 97.0 34 ................................C ATACATACCACCCTCGCGGATTAATTCTTCGATT 11240 33 97.0 34 ................................G GCCTAGCTGAGATTACAATAACTAACACAGATTC 11307 33 97.0 35 ................................A CCCACCTAGCACTGCTGATTAACCTATCAATAGTT 11375 33 97.0 32 ................................A TATCTTTTTCTCCTGTTTTATCATCTTATGAA 11440 33 100.0 32 ................................. ACAGGGCCATCGCAAAAAATACGCCTACCCTC 11505 33 100.0 33 ................................. ATCATCGAGGCGCCGCGGAGCAGTGGAGATGAC 11571 33 97.0 34 ................................C TAACGGGTAGCATGACTTGACATATAATAAAGGT 11638 33 97.0 34 ................................A GCATTTTCGCATACGAGTAGATATGCGCAGTGAT 11705 33 97.0 34 ................................C TCGATCGTTACCCCATCAACCTGTGTAGTATCTC 11772 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= ====================================== ================== 33 33 98.0 34 GTCGCACCCCTCGCGGGTGCGTGGATTGAAACT # Left flank : GTGTAGGAAAGATTTGTGAAGATTATGGTCAGCGAGTACAGTACTCCCTTTTTGAATGTCTGGTAGACCCTGGACTTTGGCTCAAAATGAAGAAGAAATTAGAGAGTGTTATTGATTTTGAAAAAGATAGCCTTCGGTACTATTACCTGGGGAGTAATTGGAAACGCAAAATAGAACATGTAGGAGCAAAACCCTCCTATAACCCGGAAGGGACTTTGATTGTATAATTCATCAGTGTTTTCCCTCAAAGTGTCGGCGCTTCAGCTATTATGCATTTTTTTGAATTTCATGAATATTCCAAGTAATCTCAGCAAATAATTCACTGCGCGAACATAGCAGAAACAGAAAAATATGGGCCGTTCGCAAAACTTGTAATCTATGTTATAATAAGCATTTATAGAATTTAGATCTTTGACAGAACAGGATAGGGACAATATATGGAAGAGGTTCATGAATTCGAGACACTATTTCATTGTACAGAAATGAAGTATAATGAAGAG # Right flank : GCCCGAGTAGCTCGACCTGATAAGGTCCATTATGTCGCACCCC # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 254-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWYT01000314.1 Olavius algarvensis spirochete endosymbiont isolate 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 253 33 100.0 33 ................................. AGAATTTCGAAACCAAAAAGGTAAAAAGGAGTT 187 33 97.0 32 ................................G CAACTGCGCGCCGGGAAGGCTGGGGCAAGCTC 122 33 100.0 35 ................................. GCTATCATCGATTCCGCTAGAGATATTTTCAACGA 54 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= =================================== ================== 4 33 98.5 34 GTCGCACCCCTCGCGGGTGCGTGGATTGAAACT # Left flank : ATTTTGAGCTGGTTGG # Right flank : ATAATTCCTCCTGTAAAATTTT # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [28.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 24-455 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWYT01000250.1 Olavius algarvensis spirochete endosymbiont isolate 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 24 33 100.0 33 ................................. TAGCGTCGCCGGTGGATTGTCCCACGGGATGAC 90 33 97.0 34 ................................G TAGTTGTCGCGGTTCGGCTTGCTGTCTTTCTGCG 157 33 100.0 33 ................................. ATCATCGACTCGCCTTTGAGTAGCGGCGATGAT 223 33 97.0 34 ................................G AAGGTACGACCGTGCACTCGCGGCGGAAAAAAAT 290 33 97.0 33 ................................C GCTGGCCCGTGCTGATAACATCCAGCCATACCC 356 33 97.0 34 ................................A ACCAAGCGGGCGGCGCTGGTAGGCGCGTGTATAA 423 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ================================== ================== 7 33 97.9 34 GTCGCACCCCTCGCGGGTGCGTGGATTGAAACT # Left flank : TTTTTCCAAGTGCTGACGCGCGAG # Right flank : TAATTCCTCCTGTAAAATTTT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 293-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWYT01000324.1 Olavius algarvensis spirochete endosymbiont isolate 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 292 33 100.0 32 ................................. CAGACCAGCTGCCCCAATATTCCAGCCAGCAT 227 33 97.0 33 ................................T GGCGGCCGGGGGTACGATATCCTGGACGCCCAA 161 33 97.0 33 ................................G CGCGTCCTGGGAGAATCCAATGTCCCCCTGATC 95 33 100.0 33 ................................. TATAGCAGATTACGGAAATAATTGCATTTGGAA 29 29 87.9 0 .............................---- | ========== ====== ====== ====== ================================= ================================= ================== 5 33 96.4 33 GTCGCACCCCTCGCGGGTGCGTGGATTGAAACA # Left flank : GAGATATTTTCAACG # Right flank : A # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //