Array 1 447-963 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABZEO010000035.1 Allochromatium humboldtianum strain DSM 21881 assembly_contig_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 447 29 100.0 32 ............................. GTGGGTCTGGCCGCTCGCTCTCAACGACTGAG 508 29 100.0 32 ............................. CTCTACAGCACCCGCTATTGCGCCCTGCACGA 569 29 100.0 32 ............................. CGGCTGATGACGAGCTACACGCTCGACCTGCC 630 29 100.0 32 ............................. AGGGTTGGATTCAATCAACCACCGGAGACTAC 691 29 100.0 32 ............................. TCGGGGTAGCTCAGTTCTGACGGACAACGTGA 752 29 100.0 32 ............................. GGAATCAAACCGACGGCGGGAAGGGCGGCGCT 813 29 96.6 32 ............................C CACAACTGACCTGCAAAGGAGGTCAATATGGC 874 29 100.0 32 ............................. TCGACACGACTATCCAGATCATCTCCGGCTAC 935 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 CTGTTCCCCGCGTGCGCGGGGATGAACCG # Left flank : ACTACGGCGGCAGATCGAATACAAGGCCCACTGGCGCGGCGTGACGGTCGTCATCGCGGATCGCTGGTTTCCATCCTCCAAGACCTGTCACGCCTGCGGTCAAATCCATGACATGCCCCTGTCGCAGCGCATGCTGGTCTGCGACTGCGGACACGTCATGGATCGTGACCTCAACGCCGCCAAAAACCTTGATCAGTATGGTCGCGACGCGCTCAGGCGAGACCTTAAACGCACGTAAGAGCCGGGTCAGACGGGGAAAGCCCGCACGGGTGTTGACGACGTGAACAGACTTATTCAGCTTCGTGCAAGTTTGGATAGGTTTTTATGAGCGGTATGCATGTCGCTGGCGGGTTGCTCGTCATCCATGACCCACTTCCGGGAACAGAAAATTTGGAGGATTGTTTTTGATTGGAAAAAACGATATAAAACATTTGATTAAATTAAGAC # Right flank : GTGGGGACGGAAACCACGCCATCAAATAGAAAACCCCACCAGTCAAAGACCGATGGGGTTTGGCTTATGCGGCCAGCTTGCTCCGCAAATTATCGTTCACGTCGCCGTTCTTTGGGGCGCGATCTATGGCCGGGATCCCCAGGCGTTCACAGGCGGCCAGAATCCGGGTCGTGGCATCCTGTCCGGCTTTGTCGGAATCCAGGCACACGAGAACTCGACTGGCTCCAGCGAACCATTCGGGTCGCCAGACCGAGGCACCAGGCAGACCGATGATGTCGCCTTTGAACCCGAGGGCCACGAGTGACAGCAGATCTACTGCACCCTCGACGACCGCCAAGCGGGAATCCTCCCCGGCCCAATACCAAGGCCGACTGGCCGATCCATAACGGATCGCCTTGCGCTCCCCTTCGTTCGGTTTACGGCACAGCCGAAATTCGGCTGAATCCATCCCCGGCAAAAAAAAGACGATCGGTCGATAGGCAATCGCCGGGATCTTCTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGTGAGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14381-13464 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABZEO010000026.1 Allochromatium humboldtianum strain DSM 21881 assembly_contig_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 14380 37 100.0 35 ..................................... GTAACGAACTAGGAGGCCTCGCCGCCAGAGATCGT 14308 37 100.0 37 ..................................... CTGATACCGCTCGACCTGATATTGGGTGCCGACGATG 14234 37 100.0 37 ..................................... CGTGATAACGATACCGGCACCTTGCGCAACTCACGTC 14160 37 100.0 36 ..................................... AGCGTTACGCCAAGCGCGTCCATGCCTGTTCCGGTG 14087 37 100.0 37 ..................................... TTAGCATAGATCCGCGCATAGCTGAAAGCTCGGATAG 14013 37 100.0 36 ..................................... ACAGCTTGCTACAAATGCCCCCGCGTCTGCTGAGTG 13940 37 100.0 36 ..................................... CTGATGCTTTCAAAGGCAGGCATCAGCTCCAGATCT 13867 37 100.0 36 ..................................... TAAATATTACTTTTCGCATTCTCAGGCTAAAGGCGC 13794 37 100.0 38 ..................................... TCTCTGGAAGTCCTGGCGCTGGAAAAACAGCTTATGTC 13719 37 100.0 36 ..................................... ATATTTCGAATATTCAAGAGAAGGGGACTACAGCGA 13646 37 100.0 36 ..................................... AAGAAATGACTGCACCAGCACCAGCACCGGCACCAG 13573 37 100.0 36 ..................................... CATATTGGGACGCGACCCTCGAAAACGGCCTCTGAC 13500 37 94.6 0 ..........................A..T....... | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 99.6 36 GCCGCAATAGACAATCCACTACAACAGGGATTGAAAC # Left flank : GTGCTTTGGCTCAAGGATGGGACGATGGCACCACTTGACTATAAATACACCGAGGCACGAGATCAGGTTTTCAAGACCCATGAGACACAGGTGACGCTTTACGGTATGTTGATCGAAGCTGTCTACAAAAAGCCGGTACAGCGTGGATATGTGGCCTATGTGCGCGATGGCAGTCAGCTCCAAGAGGTTGCGATTACAGAAGCCGCCAAGCAGGAGATGCGCTGTCTTGTGGAGCAGATTTTCGCTATCATCCGAACCGGTCGGCTTCCCGCACGAGCGTCTTCGCGCTTACGTTGCGAAGACTGTTGCTACAAAAATATTTGCGTCTAGCCACCTGGCTTTCGTAACTATTTGATCTATTGTAATAAAAAAGCATTTTTCGATGCAGGCAACGACTAAAAAAGTCATTTCGAGGCAACTTCTATGGGCAAAATTCTCAAAAAGACAGTATCTGAAAAAATGTATGATTTTGATCGAAGAGGTTTTTTGGTGAATATGCA # Right flank : AAATACTTTCAGAGAAAGTGTGGCGAATTAAATTCGACCACAAAAAAATCCAACACAACAAGGATTATGATGCGCAAAGAGACCGGAGTGTCATCGTCGCTCAGGAGGCGTGGCGGGACTCCCAGTCGCCCACACGCCCTCGCGACGTGACAACCTTTAGGCCCGGCTTCGTCCCACTCCGAGAACGGCTTCGGCTCGATGCGCCTTCGCCATTCTCTGCGCGAATGACTGTACGGTGTATCGGATGCGCTTTGCCTACTCGCCGGGACTACCGGCCCCGCGCTTCGCGCTTCCATGGCCGGCAGCGGGTGATCCAGATCCAGGCTGGTGCGCTGCTGTCCTTGATCCAGCGGCGTTTGCACGCCCCAAACCGGATCCGGCCATGCAAACGTGGTGGCTGGCCGTGCAAACCGAGGGAGTCGTGTGGCGGCGAGACAGCGAACACCTGTTTTTTGGGGCGGCTGGTTGGGGAGTCTAATTTTGCAACTTCCAACACTGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATAGACAATCCACTACAACAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 10214-10363 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABZEO010000036.1 Allochromatium humboldtianum strain DSM 21881 assembly_contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10214 28 100.0 33 ............................ TGTTCAAACCGCATTTCGCGAAGATCATCCAGC 10275 28 100.0 33 ............................ CAACGAGGCCGCATCCGACATGACCGACCCGAT 10336 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GCGCTTCCCGCGCGCGCGTGGGTGCGAG # Left flank : AGGAATCGGGCGCGGTTGACTTCTCTGAAGTGACGGCGCAACGCTACATGCGGATCGCCTCAAATCCGTCACGCGCGACGGATTTGGAACGGCCCTCCATCCGCGCCGCCCTCGAACTCCTGACTGAAGACAAGGCCGGCATCACGACGCTTCGGGCGCTCCTGCTCGACATGCGCGACCGCAAGGGATGGAAGGCGCTCGGATATTCGAGCTTCGAGGAATACGGCAAAACCGAGCTTGGTTACGAAAAATCGCAAATTTACCGGCTGGCAGAGGCCGGTGAAATAGCGAAATCTCTCGATTCCCCAATTGGGGAAAGCGCCCCGGAATCCCACCTCCGCCCACTCGCCCCACTGACCGACGACGAGCGCCGCAAGGTCTGGGAAGAAGCGACCGCCAAAGCCGCACGGCGCCTTGACGCTGGATCGTCTGGCGCTAGCCTTTGTATAGGCTCTGCTCCCATCCGGCCCTGTATACCAGAGGGGCTTGGTGCGTAGGCG # Right flank : GATCGGCAGCGTGCTGCCGATTTCCCGCGATCCGGCCACTCCCGCGCGCTCGCCGCCATCGGACGCCCTTTTTTCTGGTGGCTAGAAACTCTGGTAGCTCCCTTTTTTCTGGACTGAAGAAACCCCCGCCCGATTTCACCTGATCCTCGATACCGATCAGGGGCGGAACACGCGCGAATCAGGAAAACCGCGCCAGATAGCCCTACTCCGATGCCGGATGATGCCCTCGCCTGATATTGCAGGTGACAACAGGGTCATCCCCAATGCACGAAACCCCGATACCCACCCCACGCGACGCCGGAGGGAAGTTCCCTCCTGGTCGGAGCGGCAACCCGCGAGGCAGACCGCCCGGCTCTGGATCATCGCCCGGCGTCCGACTGCGGCGCTTGATCGCCCAACACGGTGACGAACTCGTCCAGGCGCTCATCAAGCAGGCCAAGCAAGGCGATACCGCCGCCGCCGTTGCCTTGCTTGATCGCTGTGTGGCGCGTCTGCGGCCG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGCTTCCCGCGCGCGCGTGGGTGCGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 7491-10769 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABZEO010000015.1 Allochromatium humboldtianum strain DSM 21881 assembly_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================ ================== 7491 29 100.0 32 ............................. CCCATCCAGTTTGCGGCCGCTGTTCCGAGCAT 7552 29 100.0 32 ............................. ACGGCATGGAGGGCTGAGCGATGCAAGCCACA 7613 29 100.0 32 ............................. TCGACTGGGGTCTGCGCGAACCCAGCCATCTT 7674 29 100.0 32 ............................. ATCCTCGATCAGCAGCACGTCGACCTGCCTGG 7735 29 100.0 32 ............................. CGGCTGTATGCCATCCACTTCGAGCGTCAAAT 7796 29 100.0 32 ............................. CCGCCGACGCGCTCGATGGCGTCCGTCGGGTC 7857 29 100.0 32 ............................. ACCACCTATTCGCAGACGCGGTGCAACACGAC 7918 29 100.0 32 ............................. CGTTGCATGGGTTCAGGCTCCTTGGCTCACGG 7979 29 100.0 32 ............................. CAGCCGATCCGCTGGCGCCGTGCTGCTCAAGC 8040 29 100.0 32 ............................. ACACTGGCCGTGGCGTTGCGCGAGGTCGAGTC 8101 29 100.0 32 ............................. CACGGTGCAGCGCTGGCTCTCCAACGGTCGCA 8162 29 100.0 32 ............................. ATGGTCCGCGGTCGGTCTGGAAACACCCGTTG 8223 29 96.6 32 ............................T TTTCTCCCAGCTATGGTGGCGAAAAAATTTGT 8284 29 100.0 32 ............................. ACGCGCGCAGGTCTTCAGGACGATAGCGGTTG 8345 29 100.0 32 ............................. CACTGTTTCGGAGTGAGCGACTGTAGCGCATC 8406 29 100.0 33 ............................. AAGACTGAGGCAGGCCGCGCGTGGCGGGCCAAC 8468 29 100.0 32 ............................. CCGTCCAGGAGCTGCGCGAGGAACTGCGCGAC 8529 29 100.0 32 ............................. GCATGGAAATGGCGGCACGCCCGGTACACCTA 8590 29 100.0 32 ............................. ATCCACCCAACCGGAATCGTGGAGCCAGGAGA 8651 29 100.0 32 ............................. GCCATCGGCGTCTCACTCAACGCCGACGCCGT 8712 29 100.0 32 ............................. CTGGCCGCGCGTGACTGGACGACGGCGCTGTC 8773 29 100.0 32 ............................. GTGGTTCGTCTTACCGTCTCGCGGCGCATGTG 8834 29 100.0 32 ............................. GCGCTTAACGGAACGATGGCCCCAGAACCGAG 8895 29 100.0 32 ............................. CGCGCGCAGCGCGCATCGTGCTTGACTGACGC 8956 29 100.0 32 ............................. TTCAGCCTCGACGACCTGCTGCTGCGCGCCGC 9017 29 100.0 32 ............................. CACGTAGGAACCCGGATCCAGGGCCGCCGGTA 9078 29 100.0 32 ............................. CGGACTGTTTCGTCGTCACCGAACAGGCCGCG 9139 29 100.0 32 ............................. GTAGCGCTCGGACGCGCGATTGATCCGCCCGG 9200 29 100.0 32 ............................. CCGTTGTCGATCAGCCAGCGCACTGACGGCCC 9261 29 100.0 32 ............................. GACTCACTCGCCCTGGCACTGCTCGTCCATGA 9322 29 100.0 32 ............................. ATCCGCATGGAGATCGGCGTCTCGACCCTGGA 9383 29 100.0 32 ............................. TCAATTTCGCTGTCTTGCGAAACGCCGAACTC 9444 29 100.0 32 ............................. TCACGCGGTCGGTGATGTGGTGCATCGCGGCG 9505 29 100.0 32 ............................. GGCCTGATGGCCGAGGCCTACATCCAGGATCT 9566 29 100.0 32 ............................. TCCGGGCGCTTCCGCATCTCACCCAAGCGGTG 9627 29 100.0 32 ............................. CGCGACAGGCGCTCCATCTCGGTCTGAGGTGC 9688 29 100.0 32 ............................. CAATTCGCAGATGAGAATATTGATCTCGTCTT 9749 29 100.0 32 ............................. CCGGTGCAGGATGCGGCGGACAAGCTGGTCAG 9810 29 96.6 32 ............................C CTGGAGATCCAGCTCCGGCGCCTCCAGATGCC 9871 29 100.0 32 ............................. GCCGTGCCCTATGACCCGGACGCCACCGACGG 9932 29 100.0 32 ............................. ACTCCATCCGCCGCCTGTATTCTGCGCTGAGC 9993 29 100.0 32 ............................. GCATCCGAATCAGCCAGCAGGGTCTTGGCGTT 10054 29 96.6 32 ............................C CTGGAGATCCAGCTCCGGCGCCTCCAGATGCC 10115 29 100.0 32 ............................. ATGACGGACGCACCAGTTAAACACGCCGATCG 10176 29 100.0 32 ............................. CTTAGCGACTTTGACTTGACTACCAACCGCGG 10237 29 100.0 32 ............................. GGGCTGTTCGTCTCCTCTGTGGTTCAGTTCCT 10298 29 100.0 32 ............................. AAACCCGCCGATCCCGGCCCCCAAGCCGACAC 10359 29 100.0 32 ............................. CCTACCGCACTGGCAAGGCTGACGAGTATCGC 10420 29 96.6 48 ............................T ATAATGACCATTCAACCATTCAACCATTCAACCATTCAACCATTCAGC 10497 29 100.0 32 ............................. CCGCGCGAGCCGTGGAATGCCATGGTGTTTCT 10558 29 100.0 32 ............................. CCGCGCGAGCCGTGGAATGCCATGGTGTTTCT 10619 29 100.0 32 ............................. GCCAGTGGGTAGGAACGGATTAGTGAGTCTGC 10680 29 96.6 32 ...........A................. TCGAAAGCCCCGTCGAAGTATCGCGATCCCGA 10741 29 93.1 0 ......................C...G.. | ========== ====== ====== ====== ============================= ================================================ ================== 54 29 99.6 32 CCGTTCCCCGCGCTCGCGGGGATGAACCG # Left flank : AATCATTCCGATGATCGAGGAGGTTCTGTCGGCCGGTGAGATCGAACCGCCCAAGCCGGCCCCCGAGGCGGTCGCACCGGCCATCGACGACGGGAAGCCTTTGGGCGATGCTGGTCATCGTCACTGAGAACGTTCCGCCGCGTTTGCGCGGACGGCTCGCGGTCTGGCTGCTGGAGATCCGCGCCGGGGTCTATATCGGCAGCCCCTCAAAGCGGCTGCGTGAGTTCATCTGGAATCAAGTGCTGGAGGGCGTCGAAGATGGCAATGCAGTCATGGCTTGGAACACCAACACGGAGTCGGGCTACGATTTTCTCACCGTCGGCAGGAACCGGCGTGTTCCAGTCGATTTCGATGGTTTGCGGTTGGTCAGTTTCAAGCCGCTCGATGAGCCGGATAAAGCTCTTTAACAATCGAAATCACGCCCCTTTGAAATGGGGCATTTTGCTGGTAGATTTCTCAGCGTCTGATTTCTTGTTCTAGATCAGGCAAGTATGGGAAGT # Right flank : GTTTTTACGCGCAGCGATTGTCGATATGCGGGAAATGCTAAGATTGACCGAGTCCGCTTGGGCCTTGAGGCTCAACTGTCTGGAACGTCTTAGAGCGTAGGTTGCTATGGTTTCGATCCCCTTCAGTATCGACACGCTCGGCCGCTGGCGACGCTCACTCGCCGTCAGCGCGTTCTGCGCTGGTGTTGCGACCGGCGCCGACCTAAGGGCCGCCGACGCCCCCCTCACGCCTCAGGAAGACGCCCAATCCGATCGACAACAGGCCGAGCTACTGGCCGTCCTGGATGAGGCCACGGAGCTGGCTACCAAAAACCGTATCAATGTCGACTATGTCCCCGGCATCATGACCGTGCTGGAGCGCGCCGAGATGCTCGCGCTGGGCGTGCGCACGGTGGCGGATGCCCTGACGCTGATCCCCGGCGTCCTGGTCGAGCGAAACGGGACCGGGGAGATGACGCTGTCGATCAGAGGACAGGGAAACAGCAACGGCACCGTCAAGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCTCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 230306-230093 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABZEO010000005.1 Allochromatium humboldtianum strain DSM 21881 assembly_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 230305 30 100.0 31 .............................. GGCCAGTCAGATCCCTGCACTGGATGAGGCG 230244 30 100.0 31 .............................. AGCTGAATGACCTTGTCGCCCGGCGCATAGG 230183 30 93.3 31 ............................GG AGTTGGACGCCGATGCTCAAATTTGTCCATC 230122 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 4 30 98.3 31 GCCGGCTCCGCGCGCGCGAGGAAATGCGCC # Left flank : GGCCTTGCTCTCGGCGATGCGCGCGTTCGTTTCCGCGATGTCGCGTTTCACCTCCAGACGCAGTGCCTCGATGTCGCGCCTGAGGTTATTCTCGCGGGCCTCGACATCCCCCTTGGTGGCTATCTGCCGGTCAATGATCTCTGCCAGGGCGTGGGCTTGGGTCGCGGCTTGCTGTTCACTGAAGCCACCGGACTTGAGCTTTTCAGCATAGGCCAGGGTGTCGAGAACGATGGTGGTCATTGGGTGTCTCTCTCGGGTTGTTGGTTGTCTCGAAGCATAACGATCTATCCCTGAGCCACCAGGGGGCGTCGATCCTTCTATGGTGCGGCGGTCATCTCAGGATACCAGAGCTTAGCGGCCTGATCGGTGATGGGTGTTCCGCTGGATCAGCCATCCTGCTCTAGCGCTTCGACCTCGGCCACCAGGGCGGTGTGCGTCTCTCGCGATGCTGTCTGGCACTCGCGCCGGCCGAAAATCCGGGATCTTCCCGGATTTGCTAA # Right flank : CATGGGGTGGTGAAATACCACCCAGCCGATTATCCATCCTGCTCCAGCGCTTCGACCTCGGACACCAGGGCGGCGCGCGTCTCTCGCGATGCTGTCTGGCCCTCGCGATGGATGCGGCTCAGGTTGGAGCGGTCGATCTTGTGCCCGGCGGCGGCCATAGCACGGGCGATGTCGGTATAGGTGCCGAACCGGTCGAGCAGCAGACCGACCAGGTCGGCATCACTGCGCGGCGGTGCGTTCCGCTCCAGGGCCGGTGCTGGCGTCACTGTGTCGCTTTCCAGGGGCGTCCGCCCTTTTCCCCTTTTTGGGGGTAAATTCGGCTTAATATCTGTCACTGTGTCGGTATCTTCGGACTCATTTTACGTTACAGTGACGCCATTATCAGCCGCCTTATTCGTCACTGTGTCGCCTTTCGGTATCCGCTCCAGATGCACCACATAGGTGTGATCGTCACTGGAGCGCGCATTAAGCCGCCCGAACAGTTCCTCGACGCCGTAGAA # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGGCTCCGCGCGCGCGAGGAAATGCGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.30,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 57288-58045 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABZEO010000018.1 Allochromatium humboldtianum strain DSM 21881 assembly_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 57288 28 96.4 32 ..A......................... GCTGGAAGCGCGCGACCAGCAGCTGGCCACAC 57348 28 96.4 32 ..A......................... ATCTGGCACGAGCCTTCCTGCCACCCTGAAGG 57408 28 96.4 32 ..A......................... GGCTGGCGAGCGCGGAACCGACTGGAACGACT 57468 28 100.0 32 ............................ TTATGAGCCACGCATTCGACCAAGATGAGGGA 57528 28 100.0 32 ............................ GACCCGAGAACCCAACGATCGTTGATACAGCG 57588 28 100.0 32 ............................ ACGTCTAAAAAGCGCGCAGAATTGATCGAACA 57648 28 96.4 32 ...............C............ GGTGCCGACGTCGATTAGTGCCGCGCCATACT 57708 28 100.0 32 ............................ ACAGTGCGGACAGACAACCCGCTGTTCTTTCA 57768 28 100.0 32 ............................ CGCTCGTCTTTGGCACTGGTTCCGTAGACCGC 57828 28 100.0 32 ............................ GATCTGGGCCAACGCCGGCTGCTGGCGACGGA 57888 28 92.9 32 A...............T........... TCAAGACGCGCCCGTTTCGCCTCCTTGGCTTC 57948 28 100.0 41 ............................ GTGATGGCTTTCACTCATAAATGAAGAGCGTGATGAGCCAA 58017 28 89.3 0 ......T...........A..C...... | T [58043] ========== ====== ====== ====== ============================ ========================================= ================== 13 28 97.5 33 GTGAACAGCCGGATAGGCTGCTTATAGA # Left flank : ACGCGGATACAGCGCAACGGCGAGGCCTGCCTAAATCGTGCGAGTTATGGACGGCGCTTAACGGATGGTATGGTGAATTTAATCCTTAAAGACGCTATGGGACGCCTGGCCGAAGCACGTGGGGAATTGCTTTTACCCGAGGATATGGGAGAAGAAACGCGACGAAGCGCGTGGCGCGCTCATGCCAGTTCGGTTTCGGGTCATTCACTCAGGGTAGGCGCTGCGCAGGATATGGCCGCCGCTGGAATTCCAACGGCTGGAATCCTTCAGGCAGGCGGCTGGAAGGATGTGCGGATGATCAAGCGCTATTTGCGGCATCTTTCAGCGTTGGAAGGGGGGATGGCTCAATGGTGGGCGGCGCAAAGCGAACGAACCCTTTTTTAGCGATGACGCTAGAATGTTGTTTTTCAAGGCATCTTCATGGCATTCAGAAAAAGGGATTTAGCGTGCTTTTGGTCAAAAACGATTGAAAATCAGCGAATTGCACGCTAATATCTGTA # Right flank : AACTTTCCCCAAAAATCCAGGAGCAGGATTCATGCAAGCTGTCGAAACTGGCGAGATCGCAAAAATATACGAACGCAAAATTTGGATAGAGACAGATTTCCACGGTGACAAGCATGTCATGATTCAGCATCAGGACGGTGAAAGCGAACCATTCTGCTATTGTAGCTTTTTCTATGATCATCGCTACACCAGCAATTCAAATACGCACGCCGCTGCGGAAAACATGGCTAAAGCCTTGGGGGCGCAAGAACCGATCGAATATCGCTCTCGTTCTATTTCTTTCGCCATTCCGACCATTCCCGAGTCGCTCAACAAAGCCTATGTCTATGCGATGCGGGCCCAAATGGTCATTTCTCGATCTAAATCGGAACGTGCCTTGAGAGAAGTTCCTGATGATCTGCTCGATATCTCGCGCATGCAGCTGCTGGACCTCGTGGTTCGCATTGAGTCTGAGCAAAAAAATCGGTATTCCGAGTATGCGAAAATAGCTGAAAACAAGA # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACAGCCGGATAGGCTGCTTATAGA # Alternate repeat : GTAAACAGCCGGATAGGCTGCTTATAGA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //