Array 1 273-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFMM010000033.1 Streptococcus salivarius isolate Streptococcus_thermophilus_BgEED37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 272 36 100.0 30 .................................... CTGAATCCGTTGAACTTGACCTACTTGATA 206 36 100.0 30 .................................... TGGCAACGTTATGAGATCTCTTATACAAAA 140 36 100.0 30 .................................... ACAAAGTTTTGAGCTTTGTCAGAATAATCA 74 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GAAAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATTACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTAAAGAGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAATTTGGTAATAAGTATAGATAGTCTTGGGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGAATAATTATTTTGTTAGAGAGTAGATTATAATGTTTTGATAGAGGAGGAGTTAAGTTGCTTGACATATGATTATTAAGAAATAATCCAATATGGTGACAGTCATATCTTGTCTAAAACGTTGATATATAAGGCTTTTTAAGGTATAATAAATATAAAAATGGAATCATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGAGATTACGAAATCTGGTAGAGAAAAACGATCTACGAG # Right flank : CAGTCAATCCAGTAGTAGCTTGCATAAGTGAGTTTTAGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 126420-125790 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFMM010000038.1 Streptococcus salivarius isolate Streptococcus_thermophilus_BgEED37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 126419 36 100.0 30 .................................... AGTCAATCCAGTAGTAGCTTGCATAAGTGA 126353 36 100.0 30 .................................... AAGCAAGGCTTACCGTGACAACCACATTCG 126287 36 100.0 30 .................................... GAAACATACTACAAATAAGGAGGCCTATTA 126221 36 100.0 30 .................................... CCCTATCACTACCGTGTAAGACACCACACA 126155 36 100.0 30 .................................... GTTTGTTTTTTGATTGTCTGTTTGCATTCA 126089 36 100.0 30 .................................... AGTCAATCCAGTAGTAGCTTGCATAAGTGA 126023 36 100.0 30 .................................... AAGCAAGGCTTACCGTGACAACCACATTCG 125957 36 100.0 30 .................................... TCTTGGAATCGTTACTGATCCGACAACTAA 125891 36 100.0 30 .................................... TGGAGCAGTTTCAACTGTAGTAGTTGCTAC 125825 36 94.4 0 .............................T.....T | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.4 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TC # Right flank : CTATAGGTTTATTCTATTCCTTCAAGTCTTGACTGATAAAAAAAACTCTCGGAAATTATTTTCTGAGAGTTTTAGTTTAGTTTCCAATTGAGACGGTTCCGTCTGATCCGACTTTGACATTTGTTCCGTCTTGGCTATTGACCTCAACTGAACCATCCTGGCTCACTGTTCCATTATTGCCATTGTTGTCATTGGCTTCGACAGTGTTATTTCCGTTTGTTTTTGCTGAGTTACCGTTTCCGTCACTCACTTCAGTTGAACCGTCTTTGTTGACTTTTACTGAAGCACTTGAGCTGCTTGAAGAAGATTCTTTGGTCACCTTACTGGATGATGTTGATGAAGATGACGAGTCAGTTTTGTCTTTAGAGTTGCCACATGCTGCTAAGGTCAACAAGGCAAGAACTGAGACAGAGGCTAAAGTTAGTTTAGAAAATGTTTTCATAATAGTCTCCCTTTTTCTTAATACATCCATTGTAAAGGAAAAATTGGAAATTCGAAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : GGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //