Array 1 14679-15368 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXPS01000029.1 Acinetobacter baumannii strain MC5 29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 14679 30 96.7 30 .............................G TCGGCACAGGTAGCAGTTGAGCAGTCATCG 14739 30 93.3 30 ............................GA GTTCTTTCATAACGTAGGCTTTAATGCCTG 14799 30 96.7 30 .............................A CGTTTCCGCAAATCTGCGAAATACTCGTTG 14859 30 96.7 30 .............................A TATAGTGGCATCTTCGAGAGTTAAAGGCGG 14919 30 100.0 30 .............................. CAGAATTTTGTTTACAAGTTCTAAGCGGGA 14979 30 96.7 30 .............................G TTTGAACATCTAATAATTGAGCTGTAATAC 15039 30 93.3 30 ............................GC CTCCAATTGATCCAATTGATCAACCTCCAT 15099 30 100.0 30 .............................. ATGGTGGTTGTTATAAACCGCCTAATGATA 15159 30 100.0 30 .............................. TAGAAGACGTGGACTCCCCCAACCTTTCAA 15219 30 96.7 30 ............................T. TGCGCTCTTGCGGTTATTATCAAAGACCTC 15279 30 96.7 30 .............................G CATGTGCTAAATCAGGGAAAAGAAAAGCCA 15339 30 93.3 0 ............................TA | ========== ====== ====== ====== ============================== ============================== ================== 12 30 96.7 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : GCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : ATTATAATCGCAATAGCTTCAATACTCCTAGTTCATGGC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15386-13133 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXPS01000100.1 Acinetobacter baumannii strain MC5 100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 15385 30 96.7 30 .............................A ATTATAATCGCAATAGCTTCAATACTCCTA 15325 30 93.3 30 ............................AG TGCGTGAACATTATTCTTTCTGCATCAGCT 15265 30 93.3 30 ............................CG GTACGTTCAACGGTCAGCAGATTTGTGTTA 15205 30 96.7 30 ............................A. TAATAGTAATCGTAGTGGCGGTGTGTCAAT 15145 30 100.0 30 .............................. AACTTGCTTACGGCCAACACCTGTAATCAA 15085 30 93.3 30 ............................AG CCAACTTAATAGTAGAAAGGTAATGCCCTT 15025 30 96.7 30 .............................A CCAAACCAATCAGCAATGGAAAAACCACCG 14965 30 96.7 30 .............................A TAAAACGCGCAAAAAAATATAAGGGACGTA 14905 30 100.0 30 .............................. AAACTGATTTACAAGCTTGATCAGTAGGCC 14845 30 96.7 30 ............................A. CATGAAGCTTATTAAATGACTGACATGGCT 14785 30 93.3 30 ............................AA AGATTCTAGCCCCCTCAATTGAGAAGTTAT 14725 30 96.7 30 .............................A TTTAGAAAGCTTGGAAAATAAAGGTGACTG 14665 30 100.0 31 .............................. TGCCGATGCGTGCAAACATTTGCTCCGCTTC 14604 30 100.0 30 .............................. ATAGATGGCTTTAACTGACTCCCAGCCCAT 14544 30 96.7 30 .............................A TAAGAAAAATGCAAAAAAGGCATTTATTAG 14484 30 96.7 30 ............................A. ACACATGTTTTTCTAATAAGAATAAGACAA 14424 30 100.0 31 .............................. ACCAGATAGCAACTCTCTAGGTCAGATAGAC 14363 30 93.3 30 ............................CC AGACTTGATTTTTATCACCATTGAAGAGTT 14303 30 96.7 30 .............................C AGGTAATAAAAAACCGCCCGAAGGCGGTAT 14243 30 96.7 30 .............................C AAAACGTATGGGTTATTGATGCTCAAGATT 14183 30 96.7 30 .............................C GTTGCTACGCGCCACGGCGCACCCATCGTT 14123 30 100.0 30 .............................. GAATCGGCCGCTTTGCGTATAAACACCACC 14063 30 96.7 30 .............................A AAATCACATCAGGGAAGTGAAGGCGAGCTA 14003 30 93.3 30 ............................GA GAATGATTTAAATTGCATTAAGCCTTTAAA 13943 30 96.7 30 .............................G GAAGTCATGAATGTAGGTGTTGAGGATGGC 13883 30 93.3 30 ............................AA TAGAATTAAAACCACGTTGATAATATAGGT 13823 30 93.3 30 ............................GA ATTGCACTTGCTAAGCCAATAATGCCAACT 13763 30 93.3 30 ............................GA CCCATAAATCAAACAAGCCAACATAATTGA 13703 30 100.0 30 .............................. CCTCAACTGACATTTCCAAATAGTAGAGGC 13643 30 96.7 30 ............................A. AAAGCGCACAACCCATTGATTTGTATTTTT 13583 30 93.3 30 ............................AG CAAATAGATCAACTGGTGCGCCCTGTGAAT 13523 30 93.3 30 ............................GA GATTCAAGTTTCACCGGATGGCACAAGTAA 13463 30 96.7 31 ............................G. AAAAAAGAGCATTTCCAGCAAAAATTGACGA 13402 30 100.0 30 .............................. TAAAGCTAAATGAGGGTTAAACCTAAGAAA 13342 30 90.0 30 .......T....................AA CGTGAACAATTGTTTTAGCTTTGAACATTA 13282 30 90.0 30 .............C...T..........G. TACTGGGTTGCGGAATATATTCGCAATTAT 13222 30 86.7 30 A......A.........T..........A. TTTGATCTTTACTTATTCTCGCTTCAAACA 13162 30 73.3 0 .......A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 38 30 95.2 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : AAATCAGGGAAAAGAAAAGCC # Right flank : AAGATAAACAATAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTAAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGTAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAACC # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //