Array 1 96932-98057 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOJ01000013.1 Salmonella enterica strain BCW_4910 NODE_13_length_134028_cov_2.11009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96932 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 96993 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 97054 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 97115 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 97176 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 97237 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 97298 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 97359 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 97420 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 97481 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 97542 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 97603 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 97664 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 97725 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 97786 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 97847 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 97908 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 97969 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 98030 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 114228-115907 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOJ01000013.1 Salmonella enterica strain BCW_4910 NODE_13_length_134028_cov_2.11009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 114228 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 114289 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 114350 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 114411 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 114472 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 114533 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 114594 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 114655 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 114716 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 114777 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 114838 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 114899 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 114961 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 115023 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 115084 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 115145 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 115206 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 115267 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 115328 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 115389 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 115450 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 115512 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 115573 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 115634 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 115695 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 115756 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 115817 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 115878 29 93.1 0 A..............A............. | A [115904] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //