Array 1 20560-23269 **** Predicted by CRISPRDetect 2.4 *** >NZ_WAGD01000022.1 Cronobacter muytjensii strain MOD1_GK1257 CmuyGK1257_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20560 29 100.0 32 ............................. AAAAAACAGGTGGGTTTTGCCTGTCAGGGTGA 20621 29 100.0 32 ............................. GTAAAAAATTGGAGCGTTGAAACGTAATCGTA 20682 29 100.0 32 ............................. GCTTGCCCGCTGCGCGAGGAACCAGCTTTAAC 20743 29 100.0 32 ............................. GGCGTGGATACCGGCGGTGAGGACGGCGTGAC 20804 29 100.0 32 ............................. TGATATCGGCTGGCGCTGACCAGGGTAACGGG 20865 29 100.0 29 ............................. GCTAGTTTTTGTAGTTTTATCATCATCAT 20923 29 100.0 32 ............................. ACCGTGAAATCAACCCTGACACTGGCGACTAT 20984 29 100.0 32 ............................. GAGGGATTACCAGGCTGAATGAGGTATATTTT 21045 29 100.0 32 ............................. GTGGGGGTTACGACCCCGAGGACTCCTATTTT 21106 29 100.0 32 ............................. CCTGTCGTTTTCTTCTTCTCCCCCTTCAATTA 21167 29 100.0 32 ............................. CACCGCGACATCTGCCTGTTTAGCCATCGAAA 21228 29 100.0 32 ............................. TGCTATTGCCACGCGCTCGCGCTGCTTCGCGG 21289 29 100.0 32 ............................. CCTGTAGCTCGCGCATCGCTGATAAATCGACG 21350 29 100.0 32 ............................. TGGATGCAACCTGTTGAAGTTAACGTGATTAG 21411 29 100.0 32 ............................. CGCTGGTGGCGGTAAGCCAGGTGCGCGGGCAT 21472 29 100.0 32 ............................. ATGAAGCCCATTTTTTCCAACCTCATGGCGTA 21533 29 100.0 32 ............................. GCAAAACGCGCATTACTGACGCCGTCAGCAAC 21594 29 100.0 32 ............................. AACGGGCGAAACCTGACCCGGCAAAACATCGA 21655 29 100.0 32 ............................. TTTATCAACTTGCCCGTATTGAGCGCCGTCGA 21716 29 100.0 32 ............................. AACGCTCTTTGCCGGCGCATTGGCACCAATAA 21777 29 100.0 32 ............................. GCGAGCCAGACCATTTCCCTAATCCGCCCTTT 21838 29 100.0 32 ............................. GTCACCGGCGCGCTAACCGGCACGGCCATCGG 21899 29 100.0 32 ............................. CCAACACCGTGGCGCCGGGCGAATCCCACGCC 21960 29 100.0 32 ............................. TGGAGGCGCTACTTGAGGCCCAGCAACAGGCC 22021 29 100.0 32 ............................. TTTGGGAGCAAATAGAAAAAACAGGAGCCTCA 22082 29 100.0 32 ............................. CCACCGGCGCAGCAGGGCGCAGGCAAGCAGAC 22143 29 100.0 32 ............................. ACATGATAGCGATTGACGAAGAGGAGGCTATA 22204 29 100.0 32 ............................. TTCAATAATCTCATATGCGCCCAGGACAAGAG 22265 29 100.0 32 ............................. CACCACCCTGTTCGTGAACACGTCGTATTGCC 22326 29 100.0 32 ............................. GAGTGGATGTGGGCAAAACCCGACGCAGGGCT 22387 29 96.6 32 ............................C TCCTGTGCGTCGCTCGAAGCCGCTATGGCCTC 22448 29 96.6 32 ..........T.................. GCTGACCCCAATCAGTGTTTATGACGGCCTTA 22509 29 100.0 32 ............................. TGGTCCGGGCCAATCTCTGGCGAAAAACCGAG 22570 29 100.0 32 ............................. CACGATTTCCCAGGCACGAATGCGGCGCGGGA 22631 29 100.0 32 ............................. CTGTAGAGAGCGGAACTGTCTTCGTTCAGAAT 22692 29 100.0 32 ............................. TGGCGGCGCATATCGACGACGTGCGCCCCGTC 22753 29 100.0 32 ............................. TCTGACTGACTGATGAGCGCCACGACGCGCCG 22814 29 100.0 32 ............................. AAACGCGCAATTACGTGGCGAAAGTCACGGGC 22875 29 100.0 32 ............................. CAGGTTTATAACGGTTGTAAAAACGCAAAAAA 22936 29 100.0 32 ............................. CATATACAACGTCATGCATAGCCCAAAAGAAC 22997 29 96.6 32 ..A.......................... AAAGTTGGTTTTGACGCCCTAATTGATCAGAT 23058 29 100.0 32 ............................. CCCGCGCACTCAAACGCACGGCGCAGCATATG 23119 29 100.0 32 ............................. TCGCCACCCTCCCGCATGAGCTGGTCAATCAA 23180 29 100.0 32 ............................. GAGTAACCGAGGGATGACAGCTGCTGTTTAAC 23241 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.7 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAAGTGCTGGCGGCGGGCGACATTGAGCCGCCGCAACCCGCGGCGGATATGCTGCCGCCCGCTATTCCACTGGCGGATTCGCTCGCCGAAGCGGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCACCGAGAATGTGCCGCCGAGACTGCGCGGGCGGCTCGCCATCTGGCTGCTTGAGCTGCGCGCCGGGGTTTATGTCGGCGATGTCTCTAAGCGGGTACGTGAAATGATCTGGAATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTGGTGATGGCCTGGGCTACGAATAATGAATCCAGCTTCGATTTCCAGACGTATGGCGAGAACCGACGCATTCCGGTGGATTTAGACGGTCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACTGTTCTTTAAGAATATGGAGATGTAATAAAAAGGTTGGTGGATTGTTGGGTGTGGAAAATTTCCTTATAAAACAGTTATATATTTTTAGA # Right flank : ATCCAGCCAGCCGACGCCCTGTTTCACGCTCCTTTGACCATGATTGCGCAATAAACCGGCATCCGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGGCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCAGGCGCTCTCGCCGTCACCGTCACAACATGCTGCTTCTTCTCTTATCCAGAGTATCTGTCTCTACTTTTTCTTATCCGCGAAACGCAATATCCATTTCCGCCACGTAGCGTTATATATTTTGTTTTTTATTTGCAAATTCATTTAACTGTCATTTATTTGTCATCTTATTGTCATAATAGCTTGTCGAGTATCGCATTTTTGAAACGTCTTTTTATAAGAAAGAGCTTAGTGCTGGATCTTAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 85814-86818 **** Predicted by CRISPRDetect 2.4 *** >NZ_WAGD01000005.1 Cronobacter muytjensii strain MOD1_GK1257 CmuyGK1257_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 85814 29 100.0 32 ............................. AGGAAAATGCTGGCGCTGATTCCGTACTTCCA 85875 29 100.0 32 ............................. GCTCGCCAGGCGCTTTGCAACAGCTGCATAGG 85936 29 100.0 32 ............................. CCTGGGCGCAAGAGGCTGGCTGGAAAGCAGTC 85997 29 100.0 32 ............................. GTGGAGCAGGCTTACGGCTCCGGGGATACCTG 86058 29 100.0 32 ............................. CGCTCATTCATGCGGGCTGGTTAATAGAAGAG 86119 29 100.0 32 ............................. GCGGCCTTTTTTATTACCTGAAATATGAGGAC 86180 29 100.0 32 ............................. ATACGAGCGGCCGCTGGGCGCCGGGGCGTCAG 86241 29 96.6 32 ..................A.......... TCCTGGCCCATTTGTTTAAACTGTTCAGGGGT 86302 29 100.0 32 ............................. TAATCGCCGCCCACCAGGTAAGCGGAAACGCT 86363 29 100.0 32 ............................. CGGCGCAGCTACTTGAGGTATGGGGCGCGACT 86424 29 100.0 32 ............................. TCTGCACGTTGGGTTCAAAGCCTGAAATCGTC 86485 29 100.0 32 ............................. GCCGTATTCAATGATCTCGCGGCCAGCGTTTC 86546 29 100.0 32 ............................. CGGCGACAAACGTTTCCATTTTTTCATCCTTT 86607 29 100.0 32 ............................. TATTACCTTTTGGTGGGGTGTTTTCTGAATAA 86668 29 100.0 32 ............................. AATCTGCCCGGCCAGCAGCAGGGGCGAACCAT 86729 29 100.0 32 ............................. AACTTGCAGACATCAGAATCGACCTCATCGAT 86790 29 82.8 0 .........A.CT......AA........ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATTGCTTTTATTGTCGCCAATATCAACATCAACTACCGACGACCCGCAGTGCTGGGCGATCTGCTGACTATCACCAGCGAGGTAAAACAGCTTAACGGCAAAAGCGGCGTGCTGAGTCAGGTGATTACGCTTGCGCCTGAAGGCGAGGTGGTTGCCGATGCGCTTATCACCTTCGTGTGTGTCGATCTGAAAACGCAGAAAGCGCTGCCAATTGAAGGCGAGCTGCGCGAAAAACTGGAAAACATCACAGGCTAAATTCTGCAATCACGCCGCCTGTGCATGCAGTGATGGATTTCTCTCCGTTAAAGGCGAACAATCCGGTAGATGTTATCGGCCCGGAAGCACTGTAAAAAAATGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGATGTAAATGTTGGTAGGTTGTGGCGGGCGATAAAAAGGTAAATAAAACAAAGTATTGTCTTTAGA # Right flank : GGAACAGGGCGGTGAGTAGAGACCAGAGAATACGCGCCCTCTGGCCCCCACATTCTTCAGCGGCGTTTATACTTCAAAGCCAACGTAAAATTTCGCAACACTGCGCAACAAAGGAGAGACGATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGCTGCACGCGCATCTTATTTGCCACTGCCTGCTGATTGAAACCCAAAACGACGGGCTGGTACTGGTGGATACCGGCTTTGGTCGCGACGATATGCGCCATCCTGGCCGTCGGTTGCCGCTGTTTTTTCGGGCGCTGAACAATATCCAGTACCGTGAATCATTAACGGCGTTGCATCATGTTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGACATATCGTGCTGACGCATCTCGATTTCGACCACGCAGGCGGTATCAGCGATTTCCCGCATGCGCAGGTGCATCTGATGCAACAGGAGATCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //