Array 1 13-303 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZFN01000389.1 Salmonella enterica subsp. enterica serovar Manhattan strain 95-0251 NODE_389_length_316_cov_0.918455, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 13 29 100.0 50 ............................. TTTCCGCTCTCTCTCGTCCATCATTCCGCGCCGGCATAACTGACGATCAG 92 29 100.0 32 ............................. GCGCGCAACCCGGCATTTCACAGAAAATTTTT 153 29 100.0 32 ............................. CTGGTCCCGCGTGTATACCAGTATTTACCGTG 214 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 275 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================== ================== 5 29 100.0 37 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTATCCCGGAAG # Right flank : GTCTGAAGATCGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [11.7-10.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 216408-217047 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZFN01000005.1 Salmonella enterica subsp. enterica serovar Manhattan strain 95-0251 NODE_5_length_325076_cov_4.83322, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 216408 29 96.6 32 ........T.................... GAAAAAAGCAAAGGGGGAGTTAGATGCGCTTG 216469 29 96.6 32 ............................A ATAGCCTCGTCGATTGGCTGACGAATAAGCGC 216530 29 100.0 32 ............................. CAAAAAATCAGACATGAATCACGTTTTAAATT 216591 29 100.0 32 ............................. GATACGCTCATCAAATCCAATCCGCATAGACG 216652 29 100.0 32 ............................. TTCATCAGGTAGCTGGCTCTCATGCAGCTTCC 216713 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 216774 29 100.0 32 ............................. CCAACAGACAACCAATGCGCAGGGGTAAGGCG 216835 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 216896 29 96.6 32 ..........T.................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 216957 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 217018 29 93.1 0 A...........T................ | A [217044] ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 600-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZFN01000174.1 Salmonella enterica subsp. enterica serovar Manhattan strain 95-0251 NODE_174_length_656_cov_0.589878, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 599 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 538 29 100.0 32 ............................. CGGGGATTAGCTCTAAAAATATTTTTATTTTG 477 29 100.0 32 ............................. CAGTATTTCGGCATGGCAAGCCGCAGCGCGAA 416 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 355 29 100.0 32 ............................. TCAGAGCCTTTTTGATGAAGTACTACGGCAAC 294 29 100.0 32 ............................. GCGTACAGCCGTATGCCTCAGACTCCCCACGA 233 29 100.0 32 ............................. GGCCGATATACAGTTTTTACTGTGGGATGCGC 172 29 100.0 32 ............................. CGGAAATTCAGGGAACCCCGGAAGCGATTAGA 111 29 100.0 32 ............................. CAGCAGGACGACGACCCGCGCCCCCGCGTCGG 50 29 93.1 0 A...........T................ | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCCCGCGCCAGCGGGGATAAACCGCGCTTGGCGGTTATCATGGCCGGTAATGACT # Right flank : GGATGTAACGTCTCTCACCTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //