Array 1 134610-134998 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATU01000009.1 Providencia stuartii strain NCTC10835, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 134610 28 100.0 32 ............................ CGTATCTCTTGCGGGTTTCTTTTTAAAATCAC 134670 28 100.0 32 ............................ AAGCGAAATAACGTTGAGCCGATGATTGAAAA 134730 28 100.0 32 ............................ TTATCTTCGTTTCTGTGTGCTACCTGAGTACC 134790 28 100.0 32 ............................ TTTTATTCGTCCAGCCCTCGATTACAACCAAC 134850 28 100.0 32 ............................ TTACCTCTTTTCGCATCACCGCAGGTTAGAAA 134910 28 100.0 33 ............................ AAAGGAATTGCGTGATAGATGGCAAACTCCCCT 134971 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAATCAGCGTTAGATAAAATCTCAAATATTGAGTCGAAGCAGGGGTTGCAACTACAAGAAATTGATCAGTTAAACTTTCTAGCAGATACAAGAAGTATTCAAAATAGTCAGCGCATAAGTGAGTTGTTGGATACAAATTGGACTGGAGTCACAACAGACTATTATAAAGAAATGGCTATGTTCCAAGCATCGCAAGATATTTTTAAAGATTTAAATAGCATGTCATTATTTGGTGGTCGCTAAGACGTGTGCCAGTCTCAACTCATTTGAGGCTGGCGCAATTACCGTATCGTTATTTTTCCCTACAATTATTTTCTTTTCTCTTATCCTATATTGCATTTCTCTTAAGATGATTTACTCTTTATTTTACCCTTTGTTTTTGCTCTTTAAAAAATTAGCCAATAAAACAATAAGTTACTAAGTGTCATAAAAAAGAAGGTATTTTTCTAAAAAATAGGCTAACGAATTGTTATTTAGGGATTTTGTTTGGTAAGCTAATT # Right flank : ATGAACGTTTCCAAAACAAACGCATTAAGCAAATTGATGAAGAAAGTAAGTCAATTTACTACGAAAACTACGAACCTGCGACGTTCCTGATTCACGTTGGATTGATATGCTTGTCGAAATGCCAAGTAATTTAATCTACAATCAGCGACAAGCAGAAGCAGAGCGATTAGCAAAAGAAGCAGCAAAGAGAGATGCTAAGCTTGAAGCTGCATCACAGATAGAGGACAATAAAAATTAATGCGCCATCTTGAGTAGTTGGCGCATGTGTATATTTATTCTTTAGGGTTTGAGCCAAATCGGTTGTTACCTGGGGTTCCATCAAGGCATGTAAACACAAAAATGACAAGACCACCAAAAGGTATAAATGTGAGCAAATACCACCAACCTGACTTATCTATGTCATGTAAGCGCCTAACAGTTACTGCAAGGCTAGGTATTAAAATAGCTACGCAATAAATCATCAGGAGGACTAGAGCTACGATCCCCAAACCATTTATATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 148162-149210 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATU01000009.1 Providencia stuartii strain NCTC10835, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 148162 28 96.4 32 ...........T................ GGTCAGAAAAAAATCACTCATGACAGCAATCC 148222 28 96.4 32 ...........T................ CGTTACCGAACTACATAATGGATATTAGATAT 148282 28 100.0 32 ............................ TTACTCAGAGCATCTTGAAGCAGGGCGTTTTG 148342 28 100.0 32 ............................ TGTATTAGCATGAGTAATACATATCCGATTAT 148402 28 100.0 32 ............................ TACATCATAGAACATGCAGAACTACTTGCTGA 148462 28 100.0 32 ............................ GATCAGAGCTGAAATAAGGAAGAAAGCAAGGG 148522 28 100.0 33 ............................ AATGCTAAATAAATCACTAGGGGGGCTATTCCC 148583 28 100.0 32 ............................ ATTAGTACCAATTGTGTTAGCAAGACCAGTCA 148643 28 100.0 32 ............................ TTGGCACAGGCGCTTCCTTCGTATTTGCTGGC 148703 28 100.0 32 ............................ ATCAACCTGTACAGCTGGGAATAAAAACGTAT 148763 28 100.0 32 ............................ TTCATTTATTCGCTTCTGCTCCATTAAATACA 148823 28 100.0 32 ............................ TGTATTTGCATTCATACCGGCATATTTCATTG 148883 28 100.0 32 ............................ ATCTTTATCCCACTTGCGTAGGACGACGACTT 148943 28 100.0 32 ............................ ACGATTTGAACGTGTGATGAAACAGTATGAAT 149003 28 96.4 32 ...........T................ TTAACTCTCTGTATGGAACCTAATTTATTTTC 149063 28 96.4 32 ...........T................ CGCCCACTCTCACCGTCCAGCGAAGCCATAAG 149123 28 96.4 32 ...........T................ ATCTCCCCGAGCAAAATAGGCACAGGGCGCCC 149183 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATTCAAACGGTGCCAGAGCATGCCACGCCAATTAGTTATGTGCGTCAACATGTAAAAGGTGCAAAGCGTTTTGAACTGGATAGGTATAAGAAAGCTCAATTGTATTCAGTAAAATCAGGGCAGCCTATTGAGGTCTGTTTAAGCGCAATAAAAGAGCCTCAAACGCGTAGTCGTTTACCTTTTATTTGGATGGAAAGTCAGCAAACAAAGTCTAAAACAGAAGGCGATGGGCATCGTCCATTTCCACTCTTTATTCGGTGTGTTGCTGCGAAGGAAGCAAAGGCAGGCACGTTTAATTGTTATGGGTTAAGTCAGTCTATGGGGAAAGGCGAAGAGGTTGCCACCGTTCCACATTTTTGACCTTTTTTACCCTTGTTTTTTTGCTCTTTAAAAATTAAACATAAAAACAATAAGTTGCAGCAGACTGTAAAAAAGAAGGTATTTTGATAAAAATAGCTTTAACTGTTTGTTGTGACTTATTTTTTATTTGATACGCTATA # Right flank : AAATGAAACATCAACTTGATTTTATATATTTTTCAAGGTGACCATTTTGGCTTGTTTTATAAAATACAAAGGTCGCTTCTAATTCTTCATTTTCGTCCAAAGTCACCGATAATAAAGGCGAGGATTTATTAATCGACTTTGTAAATACAACTGGTTTATATGAGGTACTTTGCTCACGAAAAGAACCATATTAGTTAGCCCCAATCACTTAGACTTCATCTTTATGACCAATTTGATAACGATTATCAATTGAGTTCTGAGATAAGCATCCTACTGAAATAAAACAAATATTTCCTCAGTGCGAGTTTGAAGTTGAGTTAAGGCTTCAAGTATATCATCATGATTGAGTATGCGTTTAGGCTTCTTTTCCGTCCGTTAGATGGCCCATTATCCGGAGGAACACCTTGAGAACGCGTATTACCATTTATCCTGAACCAATTTTATCAATTCTAATGTGCGGCCTAAGCGTTTATTATCAACGATAGCCCTTGGTCAACCTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 221912-222539 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATU01000009.1 Providencia stuartii strain NCTC10835, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 221912 28 100.0 32 ............................ ATGACAGAGTTCGTCATGATGCTAAAAGCTAA 221972 28 100.0 32 ............................ ATCGACTTTAATGCCATAATTGGTTTGGTAAC 222032 28 100.0 32 ............................ TAAAGGCCGAGGGATTTTAAATTCGAGGCTTT 222092 28 100.0 32 ............................ TTCGAGATATGCTCTATAGCTAGCGCCTCCCC 222152 28 100.0 32 ............................ ACGTTGTTTGGCCAACTTGGCATGCGTTGAAA 222212 28 100.0 32 ............................ ATTTAACCAAGCCCCATTTTATGGCGACTTTG 222272 28 100.0 32 ............................ ACGCACCGGAGATATCAGCCATTTTCGTCACA 222332 28 100.0 32 ............................ ACAACAATTAATGATTGTTTCTGGAAATGCTT 222392 28 100.0 32 ............................ TTTGATGTGTCGGGGAACCTTGCTATTGCATC 222452 28 100.0 32 ............................ AATACAATTATTGATATCGCAAGTAGCATAAA 222512 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCAAACGACAAAAGGAATTAGGTGTGACTAAGATAGAGCTATTTCTTGGTGAACAGGGATTAGAGATTCTCCCAAGAAAGTGCGTAATATGTAGGTCAGGCAGGGAGCAGTACAACGTAGCCAACTATCTTTTTATGTGAGCATTGATGGCTGTTCATTGTGTCCGCTCGGTAGCGCTGAATAAAAAGTGTGTAAGGGAGGTAATGATCAGCTACTGATAGTTATTTAAGTGAGGCTCATAAATGCTGGGTAACTCATGGGTGACACGGGCTAAAATTGATGTCACAAAATCTCACAGATAGTTCAAATTTAACGTGTCACTATTAATTTTGATGGGTATAGAAGATGCACTGTTTTCCTCTTTTTTACCCTTTATTTTTTCACTTGAAATTTATTGATTAAAAATCAATGTGTTAAGAATCACTGAAATATAGAAGGTATTTTTCATAAAATCAGATGTAATTTATTGTTGAACATGGTTTTTTTCATGATAATTTATA # Right flank : ACAGATAGCAGTGTGTGGTTACGTTAAATTCCTTGCTTACTACACCGATAATGATGATGCCCTCCAGTCAGCTACAGATGTTTATTTAGACGATGTAGCACAAAAACGTGCTCACAATATCCCAGCAACCAAATCCTTTGATGCTTTCCGCTATTGGGTAGTAGAGCAATCTGGCCGTTATGAAACGTTCGAAATGCCAGACGGTAGCCTACGCCGTGTCGCTAAATCAATCAGCTTTGCAAGAATGGATGACCTAGCTTTTGGCGAACTCTACAAAGCCACACTCGATGTGCTTTGGAACTTCATTCTATTCCGTAAATTTCCCACCCAACAAGCTGCTGAAAATGCAGCTGGCCAGCTATTGGATTTTACCTAGAGGCAAGACCAATGACCCAAAAACAAAGACCAAAGAAGAGAAGCAGTGGTTATCAGATGTAGCCGAACTTGGCTGTGTTTGCTGCCGCAATATGGGATATGGGGCAACTCCTGCGGAAATCCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //