Array 1 131155-129547 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGUAH010000003.1 Streptococcus suis strain 42-3 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 131154 32 100.0 33 ................................ ATCAAAAGGAGAGACTAGCGATGTGGAATCATG 131089 32 100.0 35 ................................ TGTCCCTTAGCTGTATCAATTGTGATGAAATCGCC 131022 32 100.0 35 ................................ ATGTTGTCTCCTATCCAATATTATACGTATTATAT 130955 32 100.0 34 ................................ TCAAACCGCTGCGTCACACCATCAATACCGCTCT 130889 32 100.0 34 ................................ TTACCTGGACACTATCTTAGACCTTGAAATCTTT 130823 32 100.0 33 ................................ ACTACAGCTCAGAATGAAGCGAAACTGGCCATG 130758 32 100.0 34 ................................ CCAACTGCTCCGCCAGCTACCAGCTCTGGTGTGT 130692 32 100.0 34 ................................ TATCGCTTAAATGCTATCATGCACAAAGACCGTT 130626 32 100.0 36 ................................ TCGTTTAAGCGGTTGACATCTTCATTGAGTGTAGCC 130558 32 100.0 36 ................................ TATCATCACTTGCAAGAATAGCAACAGAACACTCTG 130490 32 100.0 35 ................................ AATATTTCCAATGTAACTATTCAAGTGTTCAACAC 130423 32 100.0 33 ................................ TTTACAAACTCCTACTATTGTTGGTGGAAAATC 130358 32 100.0 36 ................................ AATGGTCGCACTGGAATTAAAGGCAAGTTTAGCATT 130290 32 100.0 35 ................................ AAGACGTGAAAGCATCGTGTTCGTGAACCACTCCC 130223 32 100.0 34 ................................ TCCTTTGATTAAGCTAAAATTGTGATGTTGTCTT 130157 32 100.0 35 ................................ AGTTGCATTGGAACACGGTTCGGGGGTGTAGTGAA 130090 32 100.0 32 ................................ ATATCGGAGTGTCCCAATCTGTGCTGAACTTT 130026 32 100.0 33 ................................ TAACAACAGGAATGTCAAACGAGGAAACATATC 129961 32 100.0 35 ................................ TCCGCCAAAGACTCTACCTAAACCGTCTCCAAGAA 129894 32 100.0 34 ................................ ATTCGTATAATAAAATTCTCTATTAGAATAAACA 129828 32 96.9 33 ....................A........... ATCTAGTTCCGATTTTTTTATCCGTTTGGTACC 129763 32 100.0 34 ................................ AAAATCATCGATTGACAGAGAACACTGGTCAAGC 129697 32 96.9 23 ......................A......... AACGTACCTGCTCGGACGGACCG Deletion [129643] 129642 32 81.2 32 .......T..T....A....AC..G....... TGGACGGCACTATGGGAACACCTGGCACATCG 129578 32 68.8 0 ....T..T..TTG..TA.A...A.G....... | ========== ====== ====== ====== ================================ ==================================== ================== 25 32 97.8 34 GTCGCACCCTACACGGGTGCGTGGATTGAAAT # Left flank : CAAAAGCTATTCGAGGCGAGTTGGATAGTTATCCTCCGTTTATGATATAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAAACAGTAGCTGGACGAAAGCGATTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGTCAACGTGTGCAACATTCTGTCTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGACAAGGAACAGGACAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGGCGAGATACTAGTTATGATCCAGATCAAGGAGTCCTTCTGTTATAGATTATCTATGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAGCATATGAAAAAAAGTGAAAATAGAGTGAATTTATGGTATATTCTACATCTGTAGAAACTTTATTTTTTACAAAACAGTGTCAAAAGGCACT # Right flank : TGTTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACCGACGGCATGATTGTTGGACTGGGCACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGCTACAGATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGGGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGAT # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //