Array 1 60945-58804 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUE010000012.1 Listeria booriae strain FSL L7-1491 NODE_12_length_99152_cov_42.474560, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 60944 30 100.0 37 .............................. CGATAAGATGACGCAGGACGTGGTCATATTTCCATAC 60877 30 100.0 34 .............................. CAAAGAAAAAAACCTAATCGACGACGGCAACAAA 60813 30 100.0 38 .............................. ACCCGCCACCCCAACGATTCCCAGCGCGCGAAAAGTCT 60745 30 100.0 36 .............................. TTGTTCAAAAAAGGAGAAGGTGATTTCGTAACACCT 60679 30 100.0 35 .............................. CTATATATATGGTGTGAAATCTTCAGGAGCTAATA 60614 30 100.0 36 .............................. TTTTCAATCAATGCATCAATGGCTCTTTGATTTTTA 60548 30 100.0 37 .............................. TCCATTTCTGTGTACAGTAAATCAGCCATGTATTTAG 60481 30 100.0 36 .............................. ATACTACGAAGTAAATGACATAAATAAGAGTGACGA 60415 30 100.0 37 .............................. GAATAAAGGGACTTCTATAGATGCGTTCGCAATCAAA 60348 30 100.0 36 .............................. ATAATTTGCGACAGTTTCTAAAACCAGATTTTCACT 60282 30 100.0 36 .............................. ATAAGTGGAGCACCCCACTGTGAAAAAACGCCAATC 60216 30 100.0 36 .............................. ACGCTTACTGCATGCACTAGACGCCGACCGAACGTA 60150 30 100.0 36 .............................. CTGTTCGAGTGCGACAAATGGTTCAAGCGCGTGTTA 60084 30 100.0 36 .............................. TTTGCTATGCCCATTTACCACATTTTTTTTGCCTAC 60018 30 100.0 39 .............................. GATTGCTGTGAGTTACACGGATGCCTCAAAACGTTTTTA 59949 30 100.0 36 .............................. TTGGTAAAGTAGCAGTCGTAAACATTGAAGCGGGGA 59883 30 100.0 35 .............................. TGATCCGTTAGTGCGGTAATTGTGATAGATTTTGA 59818 30 100.0 34 .............................. GCCATTCCCTATAGCTCGCTTTGGATGCCTCTGT 59754 30 100.0 35 .............................. TCTAAATTAAATGGTCTCATTGTTAACATCACGTG 59689 30 100.0 35 .............................. AGATAAGTTTTAAATATATGAAGGGCAACGATTTT 59624 30 100.0 36 .............................. CTGTTCAACTCTCCAACGGTGGCTTCTCTCGTATTA 59558 30 100.0 37 .............................. TCGGTAGGCGAATTTGGGTATTAAAAAAACGCCTTAT 59491 30 100.0 36 .............................. GACTGTGATCGTATTGATTACAACAGGTGCTTTTTT 59425 30 100.0 36 .............................. CATTATTATTTCTTAAACAATAGTGCAACTAAGTGA 59359 30 100.0 37 .............................. TGATATTTCAAAGGGAGTAGATCCAGCCGCCCCCAAT 59292 30 100.0 36 .............................. TCGTAACCCGTCCAGCGCCGCACAGCGTCGGCAACT 59226 30 100.0 35 .............................. ATTTCAAGCCGTTTTTTATGGGCAAATTTTGTTAC 59161 30 100.0 36 .............................. ACATATATTCCTTGTTCATTTCTGACGAGTAATAGT 59095 30 100.0 36 .............................. ATTAGATGCTTCTTAATTTACAAGTCGTCAACTCAC 59029 30 100.0 35 .............................. CCGTTAAGCACATCTGTAATGCTAAGACCTGCTTT 58964 30 100.0 36 .............................. TCCGCTACTTCTAACAGAATCGACTTAACGTTTTGC 58898 30 100.0 36 .............................. TCTTGTATCAATTTCTTCTGTAGTGCCAGGCTTGTG 58832 29 93.3 0 .......................-.....C | ========== ====== ====== ====== ============================== ======================================= ================== 33 30 99.8 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GCACAAAGAAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGGCTAGATGAGTTCTCTATGAGCGCATCAAGTATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAAGCGGGGTCAAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGGGGCATCGACAGAGTTTTGTTAAGCGTTGATGTGATTGGATTTGAGGCTGTTTTTGGAGTTCGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGAGAGTAGGCGTTGATGGGGTACCT # Right flank : CCTTTTATGATTCTAGCAGATATTCTAACCATAGAAATAAATTGAATCAAATCAAATCTTCTTTTTAGAGGTTGCTGACAATATGGTTAACGATAATTAATTGGTGAGACTGTGATTGGAACTGCATATGAGAAGTTTGAAAGAGAAGCTTTAAATACACATATTAGGAAAAATGATATTAAGTGAGAAGCATCAATCGGTACATAAAAAAATCTTAAAGCAACTAATGCTAAGTGTATAACTTCAAAAAAGAAGGAATTTAGAGGTACTTTTAGTCTATTGTATAAGAAGTTACAGTTCAAGCTGATGCTGTTTGCGGTGCAGATGGAAGTTTTTCTTCATGAGGAGCGAGCGGGTTACCGTTAGAACTTTCGAAGGTAGCGTTTCTATGAGTCTAGGCCGTTAAAACTTTGATTATGTTATCATTGAACGATGAGCGAGATAGTGAAGGCAATATATTTAATCTTTGTGAAAACGTTTGCGATAACATATTTTGCGTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 21587-18216 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUE010000014.1 Listeria booriae strain FSL L7-1491 NODE_14_length_77596_cov_43.707543, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 21586 30 100.0 36 .............................. CAGAAAAACGCTAAGTACAAGAGGTTTCTGGAGGTC 21520 30 100.0 36 .............................. ATTTTCTTGTCTTTGCAATTGCTCCCAAATCGGGGC 21454 30 100.0 33 .............................. TACACATCAGATTTCCATGTGTATCTACAATAA 21391 30 100.0 35 .............................. ATGCCTGAATGGCTACTAAATTCCCAAACCGTTTC 21326 30 100.0 36 .............................. CGCATTGCTACGGCGATGAGAAGGTCGCGCTTCATG 21260 30 100.0 37 .............................. ACACGACCAGGCAAAAAGAACGCAACACTTTATAAAC 21193 30 100.0 35 .............................. TTGAAGGGCATTAAAATAACTGTCATTCACATTTT 21128 30 100.0 35 .............................. TTTTTCTCTAGGTGTAGATCATAAGCGTAGTAAAT 21063 30 100.0 36 .............................. AGGTGACGCAAAAGAAAAGCGAGCCACCCGCAGAAT 20997 30 100.0 36 .............................. GCGGTTAACTTTATTCTTTTTGCTGTTCTCACTTTT 20931 30 93.3 36 ............................TC ACTCTGATTACCAAAAAGTATACGAAGAAAAGCTTC 20865 30 100.0 37 .............................. TGCAGACAAGACTGTCGGCTTCGAGACCGAAGCGCCG 20798 30 100.0 36 .............................. TCGCTTGGTGAGGTAACTGTGGAAGATTTTGTAGAA 20732 30 100.0 36 .............................. TCAAGTAGTAGTTTGTCATTTTTCATCACTACCTTT 20666 30 100.0 35 .............................. CGAATAAATCCTCAATGAGTTCCTTATCATTCCAC 20601 30 100.0 33 .............................. AGATTGCTGTGAGTTACACGGATGCCTCAAAAC 20538 30 100.0 35 .............................. CCAGACGATCCGTTGGACAATTCCGATGCTCCACC 20473 30 100.0 34 .............................. GCTTTTAATGCTGCATTTAAATGACGCCTACTTC 20409 30 100.0 34 .............................. ACAATCAAATTTTCATTGAATTTTTGGGATACCC 20345 30 100.0 36 .............................. TGAAATTTATATTGATTTAAATAACAAAGGGACCTT 20279 30 100.0 34 .............................. TATCTTTTGTTCTTTTAGCAGATTGAAAGACATT 20215 30 100.0 37 .............................. AATCATATGGGTTATATCAATGATAAGGATGATTCTT 20148 30 100.0 36 .............................. AACTTTTTTTGCGGCCGGACTATCAATATCATATGA 20082 30 100.0 35 .............................. AACCCAATTGGAGATGGTGGTACAGCAGATGCTGT 20017 30 100.0 37 .............................. TTTCTTAATATGTTTTTGGAACGGGGGGAAGAAGAAC 19950 30 100.0 34 .............................. CGTATCTTTTCGAGATACTTAGAACGTGTCTTTG 19886 30 100.0 36 .............................. GAATCTATAAGTGAGGAGTTACTTATTGAGTGGTAT 19820 30 100.0 35 .............................. CGCGTTGCTAGTAAATCGTTAATTTGTGCTTATGA 19755 30 100.0 36 .............................. TAGCATGCTATTCGTGGATGATGTTTATTATTAACC 19689 30 100.0 36 .............................. CCTTCAGCGAACGTTCGTCTGAAGGTAGACGACTGT 19623 30 100.0 34 .............................. CTAATTGGCTCTGTAGGTCCATATTTCACTTAAA 19559 30 100.0 36 .............................. CCGAACCCTTTTGCTTTCCAGTAATTCCACATATTT 19493 30 100.0 36 .............................. AACACAGTTGAAGCAAGCATTTCACTCAGCGCATCT 19427 30 100.0 36 .............................. AACATTCTTTTTTTGTTACCTGAAAAATATACGGCT 19361 30 100.0 36 .............................. AAAGATTCTCATCCGATTGAGAAATTGCAACAATTT 19295 30 100.0 34 .............................. CTGTCAAAATATATGTAACGGTATATGTCTCTAA 19231 30 100.0 34 .............................. AAATATCGATTAGAAGCATCGTCACAGCATATTC 19167 30 100.0 36 .............................. GATTCTAAAATCAATTCGCTAATTCGTTCTTTCAGC 19101 30 100.0 36 .............................. CACATCCAGCTGAAGCAATAGTTAGAGCGAATTGTT 19035 30 100.0 35 .............................. GTTGACATAGTATCCGTTTTAGCGCCGTTCTCATC 18970 30 100.0 35 .............................. ACTTTCGCTTTAGACACAGACCCCTTTGCGTTAAA 18905 30 100.0 36 .............................. TCAGATTATCACATTTGCAGGTAAAAAGGCAGGCGT 18839 30 100.0 37 .............................. TTCTGTAACTATCTGGATTAAAAACATACAAAGCATC 18772 30 100.0 35 .............................. GTTTATTATCTGCGAACACAATAGCACCAAATTTT 18707 30 100.0 36 .............................. CCAGCTCCGCATTGCTCAAATCCGCAGAAGGCCCAT 18641 30 100.0 36 .............................. AAGTTATTGCGGAGAGAATTCAGTATTTTGATAAAC 18575 30 100.0 37 .............................. CCGTTTTCTGTACGAGCATATCAATCAACGCATCTTT 18508 30 100.0 37 .............................. CCACTTCCTGCATCAATTACTACAGCTGGAACCGAGT 18441 30 100.0 36 .............................. AGGATACGAAGCATACAATATTGATTGCCTTGAGGG 18375 30 100.0 34 .............................. TTGATCAAATCAATAGGTGACTCACGGACCTTGT 18311 30 96.7 36 ....................G......... AAGGACAAAGGCCAAACGGTACACTTTACAAACCCA 18245 30 76.7 0 A......C.C.....C.A.....CA..... | ========== ====== ====== ====== ============================== ===================================== ================== 52 30 99.4 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGGTATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACACACGTGCAAAAATCGGTATTCGAAGGCGAAATAACCCCAGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTGTATAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTAAGGCTGTTTTTGAAGTTCGGCTTGTAAGGTTTGAGAGCGGGAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CAATTTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTGCCAAGCAATGTTCGCAGCAGTATACTCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAAAATGGCTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAACACTGTACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCCATGTCACGTGTATCAATAAAGCTCGTCCGCGCATTGCCTGCAGGAATGAATAAATCATCATGTTTCTGAATAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 7472-8622 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUE010000018.1 Listeria booriae strain FSL L7-1491 NODE_18_length_52797_cov_38.177068, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 7472 30 100.0 35 .............................. ACGAGTAATTGATAACACCTATCTGTTTTATTACC 7537 30 100.0 36 .............................. GTGCATTAGCAGATTTAAATTATGATGGGAAACATG 7603 30 100.0 35 .............................. TTGTTGGTTATTGCGCTCTCTATCGAAGCTTTAGG 7668 30 100.0 36 .............................. AATGCATTCGGCTGTTCGAAGTTTACGTGGACTTGC 7734 30 100.0 35 .............................. TTTTCACTTTGTTTGATGAAAACCTATATATTTAC 7799 30 100.0 38 .............................. AGTTCCATATGTGCTTGTTCATAGATGAGGTGCATAAA 7867 30 100.0 37 .............................. CAAAAAAACTAATAGAATTTGGCTATTACGAGGAAGC 7934 30 100.0 35 .............................. AAGTTAATTCATGTAAATCAACGCGTACGATCTGA 7999 30 100.0 36 .............................. ATCCATAAAAATTAGCCTCTGTAATTATTACAAAGA 8065 30 100.0 37 .............................. TATATAGAGGATAATAAAATGGAAAAAGAAGTCTGAG 8132 30 100.0 36 .............................. CAACAATGTAAACATCATTCGTTTCGTCATAATAGG 8198 30 100.0 35 .............................. ACATCCGCCATTCAATACTTCCGTGTGTCATCATA 8263 30 100.0 35 .............................. TTGATTATTGGAAATGCGATGCACAAGGGTATTGA 8328 30 96.7 36 ....................A......... TACACTTGCGGCTGGTCGGCGCGCACAGGGCTGGTT 8394 30 96.7 36 ....................A......... AAATTCCTCATATCTAGACCCATTTTTAACTTGTAT 8460 30 96.7 36 ....................A......... TTATTAGAATAGGTTTTAATTAACAGTACAAGTTTT 8526 30 96.7 37 ....................A......... AACTAAAAGAATGGTTCTTGGACGATCCAAGAATGGA 8593 30 90.0 0 ....................AG..T..... | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 98.7 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTCGCCGGCACGACCAAGTCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGCCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGTGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAAGGGGTTAGGATGGTTTTCGAGAAGTAGAAAAAAATAAACAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : TGTCAGCGAGGCATATTTTTCAGAGTTGCAAAACAGGTTTTATCTAAAGTAGGAGTTAAAACATAATAAAACGAATTGAATAACAAGAGGGTTAGTATCCATTAATACTGAACAATGGATACTAACCCTCTTAATCTATTGGCCTCTTTGATGAAAATTTTTAGTATGCAATTATCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTTGTGTTAAGGATGACCGTTTTCGCATAGTATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTTGCTACGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACTATTTGATTTGCAAGAGTGACAGTTTTAGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAATG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //