Array 1 14475-16359 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWJ010000010.1 Streptococcus thermophilus strain CF13_14 NODE_10_length_81631_cov_34.062138, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 14475 36 100.0 31 .................................... TCAGGAATCTCATTGAAACCAACTTCAAGAC 14542 36 100.0 30 .................................... ATGGTATCATAGGAAAACAAAAAAAGACTA 14608 36 100.0 31 .................................... TTTTAAATAATTTAAATAATTGTTGAAAATA 14675 36 100.0 30 .................................... AATCAAGTTAAAGGTTCATTCTCTAATGCA 14741 36 100.0 30 .................................... CAACTTGGGCGGGTTTGATTGAAAAAAAGA 14807 36 100.0 30 .................................... TCGTATAAATTATTACGATTCTACTGGTAA 14873 36 100.0 30 .................................... TAAAAAGCAGGACTTCACACCGCAATCGGT 14939 36 100.0 30 .................................... AGCTGTTCCTTCTTGAACATATCATAATAA 15005 36 100.0 30 .................................... ATTCTAACTTGCTACCAGCAATGCAAGATA 15071 36 100.0 30 .................................... CCAACTTTAGTCTATCAATTAGTGATTACT 15137 36 100.0 30 .................................... GCCAAAACAGTGTTACCGTCAGCGAGACCC 15203 36 100.0 30 .................................... CTCTAAAGGCAAAGAAAGAGATTGGCGAGG 15269 36 100.0 30 .................................... ATCATTTCTAGTTTAGGGTTATTAAAGGCA 15335 36 100.0 30 .................................... TAAATGGATAGTTTCCATTGGCTACATTAA 15401 36 100.0 30 .................................... TGTTATCGTTGTTTCCTTGTGGTGCGTCTC 15467 36 100.0 30 .................................... CTTTTTGTTCCCACCTTTGACCATATCAGA 15533 36 100.0 30 .................................... TGGAGTCCCGGAAATCTAGACATTGGTAGT 15599 36 100.0 30 .................................... AGAAACACTTTTTGAAATTAAAACAAAAAG 15665 36 100.0 30 .................................... TTATTCTTGGAATTATTACAGACCCTACTA 15731 36 100.0 30 .................................... GCTTTCATTATATCACTTACTCATAAATCT 15797 36 100.0 29 .................................... TTTTCGCAAAGTAAGCGAAGCTCTACGTG 15862 36 100.0 30 .................................... TAATCACCCCTTTTTCTAGCTCTTGATTGA 15928 36 100.0 30 .................................... AAGTTGATCGTATCTATTTAGAATATCGCA 15994 36 100.0 30 .................................... CATAGTATAGCCGTCTTCTTTGATTGATTG 16060 36 100.0 30 .................................... ATTCACTTTGACAGATACTAATGCTACATC 16126 36 100.0 30 .................................... CAAGCAGTGTAAAGGTGGTTTAAATGTTAA 16192 36 100.0 30 .................................... CCATGGGTGCTAAAGGTGATGACTACCGCT 16258 36 100.0 30 .................................... AAATGAACAGACAAGAAGCAACAGAAATTG 16324 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTACGATATTGAGTTTATGTATGAAAGGGTAAAGAAACACTATCCAAGTAATAATTTTCCAATGAGAGAAGGTTTTAGGATGTCCTTAGAGACTGTGACGCCTTATTTATTAACAAAAATGACGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTAAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGGTCATTGTAAATAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 713-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWJ010000002.1 Streptococcus thermophilus strain CF13_14 NODE_2_length_170979_cov_35.285127, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 712 36 100.0 30 .................................... GGTTGACCCAAAAACCCAACAACTTATTAA 646 36 100.0 30 .................................... TTAATTGTACTGCCGAACCGCTTAATTAAT 580 36 100.0 30 .................................... GAAAAGAAATCGCGATTTCTATATTACCCT 514 36 100.0 30 .................................... TAAATCCACTGACCAATACTTATGCAAGGT 448 36 100.0 30 .................................... TGGTTTATATAGAAAACGGCAACTTGGATA 382 36 100.0 30 .................................... CCAAACAATTACTGTTAGACATGCTGATGA 316 36 100.0 30 .................................... ATGTTATTCTTTTGATTCTTTTGAAGTTCT 250 36 100.0 30 .................................... GGCAAGTTCAGGTGGAGCTGGAGGTCATGT 184 36 100.0 30 .................................... TTTAATAACAACTATCAAGAACAAGGTCAT 118 36 100.0 29 .................................... TTTTTCTGCTCTTGATGAAATGGGACATC 53 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTAGTTTTATGTATTTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 15-776 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWJ010000034.1 Streptococcus thermophilus strain CF13_14 NODE_40_length_787_cov_14.732240, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15 36 100.0 30 .................................... AGAGGGTTGGCTTAAAACGGTAGCTAGTAT 81 36 100.0 30 .................................... TGATGGCATTAATAAACTGATTTCCGATTT 147 36 100.0 30 .................................... ATCAAGTTTGTTTGCATCGCTAATCCACTT 213 36 100.0 30 .................................... GGAATTAAGCAAGAAAGAGCATATTGACGA 279 36 100.0 30 .................................... TTCAGGTGTCTTTTCTGCCTTCGCTGAATA 345 36 100.0 30 .................................... CAAGTCAAGACCACATTATCAAACTAGACA 411 36 100.0 30 .................................... GTTGATTATGCGTACCATTAATAACTTTAT 477 36 100.0 30 .................................... ACCTCTATAGGAAAATTCTTCTCAGATACG 543 36 100.0 30 .................................... AAAGTACTCAAAGGAGAAAAAACTCAAAGT 609 36 100.0 30 .................................... ATCAAGGTTGTTAAATTCAAAAGCAACCGT 675 36 100.0 30 .................................... CGCTATCTCGGACGCCAAAATCAAGGAAAG 741 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATACTTGCTGATGTG # Right flank : AGCTAGTGCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [15.0-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 15-776 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWJ010000015.1 Streptococcus thermophilus strain CF13_14 NODE_15_length_53399_cov_33.217325, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15 36 100.0 30 .................................... AGCTAGTGCCTGAGCCTTGCCAATAAGGGA 81 36 100.0 30 .................................... GCTACGACCTTCATTTTCTTGTAAATATGA 147 36 100.0 30 .................................... TAGAGGTAATGATGGTATTGCAGGTAAGGA 213 36 100.0 30 .................................... CAAGGATGGAGGCGTTTGAGACAAGTTTGT 279 36 100.0 30 .................................... TATCTTATTTATCTATTTCATTGAGTTTGG 345 36 100.0 30 .................................... TGCAAAAGTAGACTATGTTCTTGACTTAGT 411 36 100.0 30 .................................... CTGAAGCAGTAGAGAACTCTACTTGGAACT 477 36 100.0 30 .................................... CATTTGATGGGAATTTAAGTCAGCTTGGTT 543 36 100.0 30 .................................... TTGAGAGTAGATGACACGATTCAATTCTAT 609 36 100.0 30 .................................... CCTTAATGCCAATGGTATTTTGAAGATTAA 675 36 100.0 30 .................................... AATTACAAAAGTCGAGTTGGCTGAAAAAAT 741 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TCTATAAGAGACAGG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATGATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGATAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //