Array 1 40761-42636 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046704.1 Nostoc sp. ATCC 53789 plasmid pNsp_a, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 40761 37 100.0 37 ..................................... ACAGCTAGGGTGAAGAAGCTGTATGAGTTGGAAGTAA 40835 37 100.0 34 ..................................... CAATCCCAAAATGATTGGCATTGTACAAGCTTTC 40906 37 100.0 34 ..................................... CATTCAAGACATCATGCTGGGTCAATATTTGCGA 40977 37 100.0 36 ..................................... CGGCTAATGCTCCGATTGTATTCAAAGCTTATCCTG 41050 37 100.0 35 ..................................... TAGTAGATGCTACTAGCGGTAAATACATTAAGGTG 41122 37 100.0 35 ..................................... TTAGCTGCTCTAGCTACAACTAATTCTGCTTCAGA 41194 37 100.0 38 ..................................... ACTTGTAAGATTAGTTCCTGCACCTGAAACATCGTTAG 41269 37 100.0 43 ..................................... CGATCGCCTGCCAGTTTTAGCTGTCTCAGCCTGAAGCCCTCCC 41349 37 100.0 37 ..................................... GCTTATCAGGAATAACAGCAGTTCTGAATAAACTTGG 41423 37 100.0 37 ..................................... AGTTTATTAAAGCTACAGAGAATATGCCTATGCTGGA 41497 37 100.0 36 ..................................... CCTCAAAACTGGGAAGAATTTGTTAATCTCACCACA 41570 37 100.0 36 ..................................... AAACACACGCCGATTCTATTCGCGGAATGGCAGAAC 41643 37 100.0 36 ..................................... CAGAACAGCAAAGATTTACTCTGAATGACTCGGAAC 41716 37 100.0 41 ..................................... ATAAGTGGGAAAAACCAGATGAGTATAGGGAAGAATGGGTA 41794 37 100.0 36 ..................................... CATAGAGGCTGGGTATGTCGTTGCAAACAGTGTTGA 41867 37 100.0 36 ..................................... ACGATGATACACGCAAAAAGTTATTCCCCAAGTATG 41940 37 100.0 35 ..................................... GTTTAAAGTTGCTCTACCAATAGTGTCGTTTACGA 42012 37 100.0 36 ..................................... AAGCGGGGGCTAGTTACGGCTTGGAGTGGGCATTTA 42085 37 100.0 35 ..................................... CTTTTTGTTGTTCTGCTGACACTTGTTGAATTTTG 42157 37 100.0 37 ..................................... TTTACAAAAAAAACTATCTTTTAACTACTAGCGCATC 42231 37 100.0 37 ..................................... AACCATGAATATTCTGAAAAGAATTTAATAATCCCAT 42305 37 100.0 36 ..................................... ATCTTCTTCTATCTCACATATATCTTTCTCTATGTA 42378 37 100.0 37 ..................................... CATTTACATAACCACCCTCACGGTGTAAACGGTCTTT 42452 37 100.0 38 ..................................... CGTTTTGGACACTACAGGGATATAACTAAAAAAAGAAT 42527 37 100.0 36 ..................................... ACTCAAGATATGCTCATGAGGGCATTTAATGAAGAC 42600 37 97.3 0 ................................T.... | ========== ====== ====== ====== ===================================== =========================================== ================== 26 37 99.9 37 GTTTCCAAAGCCTATTACCCCGCAAGGGGACTGAAAC # Left flank : TGTGGGATGGTGAGTACACCATTGGGTTACAGCACCTGAAATCTTACGAATACTTGCCTGCCGAGTGTGAGCAGATGCAGGTGATTTGCGATCGCATCAATCGGGTGTATTTCGATTCGCTAGAGGAGACAGTCAAAACTCTGTTGCAGTCGTTAGGGAAATTGAATCGGCCTTATTTAACGGCTGTCGAAGAGAAATTGTTGAGTTTGATTGAGCGAGAATACGGGCTTATAGATCAATCTCCACAAACTCATAGACAATAGTAGATACACATCTTATGATTATGGAATCAATTTGATATTTGGCAAATCGAAGCGGGGTCAAAAACCCTGGGGATCTGCCAAAATCGCCAGAACCTTGACAAGTAAATAGTTTCATAGTTTCAGTGCGAAGGAAAGTTGCAAATTACTTGCAATAAGAGGGGCTGAAAATGACCTTTTTTTTCGATCCGTCAAAAACCTTCCCAGGAAGCTTACTCCGTAACAGTTTCAGATGGAGCG # Right flank : CCAACTCAAGCAATTAACGATATTTAGGTGAAAGTTGTAGAGGTGAAGGAATCATGTTCATTTTCAAGATTTTGACTGCACTCATTTGGAATATTGTCATCTTCGGTGGTTTACTATTCTTGCCCGCAGGGACGTTAAACTGGTGGCGAGCCTGGGTGTTTTTGGGTGTTGTCATTGTTGGCACTGTGGCAACGATGATGGGTGTGTTCCGAGAAGATGACGATTTATTCAAGGAACGGCTCAAACCACCCATTCAAGAGTCACAACCCCTGGCTGACAAAATTCTTGCCAGCTTACTGATTGCAACATTCCTAGGTATAATAGGCTTCATTCCCTTAGATGTGTTCCGATTTCATTTGTTTGCTCAACCAAGCGAGATCGTTTCAGTACTGGGATTGGTCGTGTATGTCGTTGGTTGGTGGATTATTTCTCTATCGTTTAAGGTAAATACCTTTGCAGCAACTGCGGTTAAACATCAGGCAGACTGACAACAAACAGTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAAGCCTATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 45360-43770 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046704.1 Nostoc sp. ATCC 53789 plasmid pNsp_a, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 45359 37 67.6 36 T...T.A.....T..C....TAA.A..CTT....... ACGCAACCACCACACAATGACTCAAGATTGCATCCA 45286 37 94.6 34 ............A................T....... CTCAGTTCTATAACAGCGAGGATGCAGAGTTTAT 45215 37 100.0 41 ..................................... ACTGGAATTATCTTGGCAGTTCTCGTAACGGCCCTTCTTTC 45137 37 100.0 38 ..................................... CTTCATGTCATTGCCTGGTTGAGCAAACCGCATTCTAG 45062 37 100.0 37 ..................................... ATAAGTGGATTTTCAGATTAAGTTGTTTACATTCGAC 44988 37 100.0 36 ..................................... GTACCCGGTGAAAAGCCCTATTCACAGTATCAACCT 44915 37 100.0 37 ..................................... AAGATTGGCTTTTTGAGGTAGTCATCCCAAAGCTTCG 44841 37 100.0 43 ..................................... TTAGCGGCGCAGGCGCGGTACTCAGTAGCTATCAGGATTTATT 44761 37 100.0 37 ..................................... TATTGAATAACTAAATTAGCTTTGGTTAGCTCTTTAC 44687 37 100.0 39 ..................................... CCCCCATTTGTTCAGCTTTAGCTTTAGTAGCTATAGCGT 44611 37 100.0 38 ..................................... TACTTTGTTGCTCAAGTTGCACTGATGGATGCAGAAGT 44536 37 100.0 35 ..................................... GTTGATATATTAAATCAAAGTAACAGCATTTATTT 44464 37 100.0 37 ..................................... TCACTATTATTTATAAGAGATATTAAATTATGTTTAA 44390 37 100.0 39 ..................................... TGTTGGTGGTGCGCCCTGTGCAACTCATCGCCAAAACAA 44314 37 100.0 35 ..................................... TTCTAGATAAGTCTAGAACTTGTTTGTAAACACTA 44242 37 100.0 34 ..................................... CCTCCGGTGATGTAAATTGGCTCGATTATGGTGG 44171 37 100.0 36 ..................................... GATAAACGACCCAGGAACAGTATACGGACTACTTGT 44098 37 100.0 34 ..................................... GTTTTGAGATGGCGATCGCTTACCTCTATAGCGA 44027 37 100.0 38 ..................................... CGCAGCCGATATCCGCGAACTAATATCTGCCGCTAAAG 43952 37 100.0 36 ..................................... GCCTACTAAGTGCGAGAGAATTCGACACTGTTCAAT 43879 37 100.0 36 ..................................... TCATGATTTTGCACTACCAGAAGTAATCTATGACAT 43806 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 22 37 98.3 37 GTTTCAGTCCCCGTGAGGGGATTTGGTTAATGGAAAC # Left flank : GGCGTTCCTTACATTTCACATTTGTTAAGTGTAACAGCTTTAGTTTTAGAAGCTGGCGGTACCCAAGAAGAGGCGATCGCTGCTCTTTTGCATGATGTAGTCGAAGACCAAGGTGGCAAACCCATTCGTGAGGACATCCGTCAACTCTTTGGTGAAACAGTTTTGGCTATTATCGATGGCTGTACTGAGTGGGACACACCTCCTAAACCTCCCTGGCAAGAACGTAAACTGCAATATTTAGAAAAACTGCGCTATGCTTTACCTTCTGTACGCTTGGTTTCTTTGGCTGACAAACTGCATAATTCCAGATCGCTTTTAGCTGATTGCCAACAATATGGAGATGTCATCTGGACTAATTTTAGTGCCGGTCGAGAAAAAACTTTGTGGTTTTACCAATCATTAGTTCAGGTTTACCAACAGACCGGATCTGATTGGATGACACAGGAAATCGAAAGAGTTGTTAATCAATTGTGCCAGGAAAACCCTGCTTAATCTTTAGA # Right flank : CGCTCGGTGCTGAAACTGTTACAGAGCAGGCTTCCTGGGAAGCATTTTGGCAGACCTCAAAAATAGGTCGATTTCAGCCGCTATTATTGCGACTGATTATCAACTTCCCTTAGCACTGAAACTGTGAAACTATTTACTTGTCAAGGTTCTGGCGATTTTGGCAGATCCCCAGGGTTTTTGACCCCGCTTCGACTTGCCAAATATCAAACTGATTCCATAATCATAAGATGTGTATTTATTATTGTCGAGTTTCTTACATTTAAGTTAATCTAATGATGCGTAGACGTAGCCCGCCGCAGGCATCACAAGCAAGAACTGTGATGTTCACTGAAACTGCGATCGCTAATGTATTGCCCTGGTAGGGGGATAAAGGTAAGCAGTACTCATACAGGGCAACTTACCAGAGATATGGCAACAACTTATACCTAATTTTTTGTGTATAGCTGTCGTAGCCCTTAAGTTCTTGCCGTAAAAATTGCTCCTCAAATTGAATCCGTACA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCGTGAGGGGATTTGGTTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 3 73180-75065 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046704.1 Nostoc sp. ATCC 53789 plasmid pNsp_a, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 73180 37 100.0 38 ..................................... ATATTCTGAAATTCGACGGCCATCCGTCGAAGCTATAA 73255 37 100.0 37 ..................................... TAATAGCATTGTTATGAATATAGAGAAAAAGAAAGTG 73329 37 100.0 36 ..................................... ATTAAAGAGTTGGCTAGCGATCGCAGAATATGAACG 73402 37 100.0 34 ..................................... CAATAGTTGGATCTGAAAGCATCTCAACTATTTG 73473 37 100.0 35 ..................................... TTGCCAGTTTCATGGTCTTCTATAAGCACTATGGC 73545 37 100.0 37 ..................................... ATTAAACGTGAAACCTGGATTACTTGGGAGAAATTAG 73619 37 100.0 42 ..................................... TAAAGCTGCTCAAGTCCTTGGGTTCTGCCAAATAGCTCTAGG 73698 37 100.0 40 ..................................... AATAATTGGGCAACTGCGATCGCAATTACAAAACCACACA 73775 37 100.0 38 ..................................... TAATCAGCACACAAAGCACAGTTTAGCTTTATTCCTGC 73850 37 100.0 37 ..................................... AAGAGATTGCCTTTTTCCTCAACCCTGATTAATTCAA 73924 37 100.0 35 ..................................... ATATACTTTTATTTTTGATGCACTCATAAAAGAAG 73996 37 100.0 36 ..................................... CTACATTTTTTAAAGTTAGACTCCAATAGTTAGTAT 74069 37 100.0 35 ..................................... ATTTTTTTCACACCGACTGAAGCAGCAATTTTAAA 74141 37 100.0 42 ..................................... CTCCCTAAAGCAATCTTACCTTTGTTAGCTGTCTTTTGCCAG 74220 37 100.0 36 ..................................... TTGTATGAGTAACAACACCTATCAAATTAATCTTGT 74293 37 100.0 38 ..................................... ATACTCACGCAGGCTTGATAACTGGTATCAAGGCAATG 74368 37 100.0 37 ..................................... CTCACGATGAGAAAGTGGAGAAGCAAGCCCGTGCTAT 74442 37 100.0 35 ..................................... TTACATTCATGCTTGTAAACTTGTAAAAGAATTAA 74514 37 100.0 34 ..................................... GTTCAGAAATTTTATCCTTAATGTTTTTGTTTGG 74585 37 100.0 37 ..................................... AAGAAGAAACTCATTCCATTAACAAAGTTAGTCCGGC 74659 37 100.0 37 ..................................... TATGAGATGGAAACATCTTGTCCTTTAGCTAATTCCT 74733 37 100.0 38 ..................................... CAGAACGATAAGTATAAGGCTGGTGGTCATATAGTACC 74808 37 100.0 35 ..................................... AGAGTTTTTATCAGCATCAAGCAGCATCCCAAATG 74880 37 100.0 41 ..................................... ATTCCTTTATGAGTGATTAGCGATCGCTGAGAACTTCAGAG 74958 37 100.0 34 ..................................... AATTAAAGTTCTCAGCTTTAGCTTGGGCAATAAG 75029 37 94.6 0 .....................AG.............. | ========== ====== ====== ====== ===================================== ========================================== ================== 26 37 99.8 37 GTTTCCAAAGACTATTACCCCGCAAGGGGACTGAAAC # Left flank : TCTATTTGATTATTTACGACCTGCCTGATAACAAAGCTGCAAATAAACGTCGCACTCGCTTACATAAAATGTTGTCTGGTTACGGGAAATGGACACAATATAGCGTTTTTGAGTGTTTTTTAACAGCGATACAATTTGCAACACTCCAGACCAAGATAGAAAAACTGGTTAAGCCTGAAGAGGATTCGGTACGATTGTATATACTTGATGCGGGTGCAATCAAACGAACAATTACATACGGATCTGAAATCCCTCGACAAGAGCAAACAATAGTTTTATGATTATGTAATCAGCTTGATGGATGGCAAGCCGAAGCGAGGGCTAAAACCCTGGGCATCTGCCAAAATCGCCAGAACCTTGACAAGTAAATAATTACAGCGTTTCAAAAATTCGGGAAGTTGCAAATTACTCGCAATAAGAGCGGCTGAAAATGACCTTTTTTTTCGATCCGTCAAAAACCTTCCCAGGAAGCTTGCTCCGTAACAGTTTCAGATGGAGCG # Right flank : CTTCAAACATTAATTGCGATCGCAGTTGTTCAAATTAGTTTTCGACAATTAACTCATCGCCAGGGGAATTAATTGTTGTTTGCCTTTTATTAAGTCAAAGAGGATTGAAATTGCGTACAATATTGAGCATTATTTGTGAAGCCCTAAGCAATGCCAAGAGCAGCATCATCTACTAGTGGTAAACCAAAGCCAAAGCAAAAATCTGTTGCTTCTGTTGTCACATGGGCAGATGAGACAGAATTAGTGGGATTAGTGTTTGAACTGGAGTCAACTGCTTCTGCTTTGCTTTATTCGCAGTACACAATAGGACTGCACGCGTGGTTTTTGGAGCAAGTACGGCAATTTGATCCAGACCTTTCAGCTTATCTTCATGATGGAGAGTCAGAAAAACCCTTCAATATTTCAGCGCTGTCAGGTCAACTAATTGCCAGTGGCAAACAACTACGATTAGAAGGGAATCAAATATACTACTGGTACGTGAACGTTTTATCTCAACGGGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAAGACTATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 76706-78355 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046704.1 Nostoc sp. ATCC 53789 plasmid pNsp_a, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 76706 37 100.0 38 ..................................... GTTCAAATGCTGTCTCTTATCAAAATCAAGTTCGAGGA 76781 37 100.0 35 ..................................... TAATAGCATTGTTATGAATATAGAGAAAAAGAAAG 76853 37 100.0 37 ..................................... ATATCTGAATTTTTCGAGACTGGGAATATTCATAACT 76927 37 100.0 34 ..................................... AATTAACTGGTTGCGCCTGCTCAACAACAATCGA 76998 37 100.0 36 ..................................... ACCACCGGAGGCAGAAGGAAATCTGGTGATCGTATC 77071 37 100.0 36 ..................................... TAACTGCTCTGCCACTTCCCGATAGTCATCTGCGAT 77144 37 100.0 37 ..................................... CCCAAGAGAATATTGACGCTTTAGTTCATCTAGAAAG 77218 37 100.0 37 ..................................... ATCACACGCTTGGTGATAACGCAATACTAGGACTACA 77292 37 100.0 37 ..................................... TCATCTTGAAAGCCACTTACCAAAGAATTGGATTAAG 77366 37 100.0 35 ..................................... CTGTACTTCTCTAAAAAGATGGAAATTCCAGGTGG 77438 37 100.0 35 ..................................... GCTAGAGGCGATCGCTATCTATACTCGCCTCCAAC 77510 37 100.0 37 ..................................... GGGTTATTAAGCTTTACACTACCCTTTCTAAAGCCAT 77584 37 100.0 38 ..................................... ATTTTTATCGCTCAGATGCACCATACAAAAACTTACTG 77659 37 97.3 36 T.................................... TTCAATCCACGCTTTCATTATTCCAACAATTTATGC 77732 37 100.0 35 ..................................... CTACTTCGGTTGTCATAGTGTGTTAGTCGTTTTTG 77804 37 100.0 37 ..................................... GTTCCGTTACCCATGTCAATTAATGTCCAATCCCTAT 77878 37 100.0 36 ..................................... TTCGTAAGCATACCCTCTGCAATCAGACAAAGGATG 77951 37 100.0 36 ..................................... CAAATCAATGGTTGTCTGTGCCTGTTAATAACATTA 78024 37 100.0 37 ..................................... TCAAATTCAATTACTTGATGAAACTCACCCAAGACAG 78098 37 100.0 35 ..................................... GCAGCAGTAGCTCGCTTGGATCATCCGGCAGTTTG 78170 37 100.0 38 ..................................... ATCATTTAGTTTGATTCTAAACTTTCCAATTGGGCTGC 78245 37 91.9 37 .......TTG........................... GAAAAAGCGGCAATGCGATCGTTTTCGTTAGAAAAAT 78319 37 89.2 0 .......TTG................A.......... | ========== ====== ====== ====== ===================================== ====================================== ================== 23 37 99.1 36 GTTTCCACCAACCAAATCCCCTCACGGGGACTGAAAC # Left flank : GAACTGATAAAATTGCAGTTACCTGGGCAACGATTTTGGCGCGGCGGGAGATGGGGGAATCATTGAAGGCAATCGCCGAAGATTTAGAGATGCCGATCTCGACCGTGAAAACTTACGTGAAATTAGCCAGGAAATCGCTCAAACAAGAAAGTAATAGCTGAAAAAAAAGTTAAAGGTTAAGAGTTATTTGCATTCACTCATTACCAGGAAATCGCTCAAACAAGAAAGTAATAGCTGAAAACCTTCGCTTATGGACAAGGGTAAGTAATTATCTTATGATTAGGTAATCAGCTTGATGTTTTGGCAAGTCGAAGCGAGGTCAAAAACCCTGGGGATCTGCCAAAATCGCCAGAACCTTGACAAATAAATAGTTTCACAGTTTCAGTGCTAAGGAAAGTTGATAATTAGTTGCAATAAGAGCGGCTGAAATCGACCTATTTTTGAGGTTTGCCAAAATGCTTCCCAGGAAGCCTGCTCTGTAAGGGTTTCAGCAACGAGCA # Right flank : CATTCGGATATTTCCTCACTAAGCGATCGCCTATAGGCAGTCTCCATTGACCAAATCCCCAGCCGCGATCGCTATGTTCAAAATTTCTTCAAAAGTGAGAGAATTCGAGAATTACGCTATTTTCGGCTATTGGCTAAGTCTTCATTGTGGGATGGGTATCATGTTCCGTAAAGGCGTTTGATCAAGCGAACGCTTAACCCTGTTATGTCACTCTCGGAAAACAATAATTGAAGCAAGATTCTGAAACTTTTATTGAGTCAAGCTTTGAGACATTATTTTCTAACAGAAACTAAAATTTCTAGCCAAAAACTGAAAAGTAAAGCTCTCAAAGGCTTTCAGGCATTGGCTTCTCCCAAAGTGACAGAACAGGGTTAAAACACCCAAGGTTTTTCCTCAAATAAACACTGGTATTCTTTTAGAAATTATGGCTACGGTTATTACTGAGTTACTTCAGTGCTGATGAGCTATTAAAAAATTTAAATTATACAAATTAACATCCG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCACCAACCAAATCCCCTCACGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2343646-2342811 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046703.1 Nostoc sp. ATCC 53789 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2343645 37 100.0 34 ..................................... TAAAGTTTTCATTACTAGAGTTTATTTCACAAAA 2343574 37 100.0 36 ..................................... AAGTGGTGAAGTGAAAACCGATTGAGCCTTAACACC 2343501 37 100.0 36 ..................................... TAATTCAAAAGCACATCCATCAGTGATTGTCTGAAA 2343428 37 100.0 34 ..................................... TGAAAATTCGAGCGATTGATGAACCAATGGGGTC 2343357 37 100.0 34 ..................................... GCATTTTTATCTACTGTAACTTTTAGAGATTGGA 2343286 37 100.0 35 ..................................... TGAACTATCAACTTCACCACCCAAAAAGGGATACA 2343214 37 100.0 43 ..................................... AGCCGAACCATGAAACGACCCGCCGCTAAAAATTCCCTTACTT 2343134 37 100.0 35 ..................................... CCTGTGGGGTAATCCAAGGACTAGCCACACCCAAA 2343062 37 100.0 35 ..................................... ACGTGTATAAGTTACTTTTATTTTCCCGGCTTTAA 2342990 37 100.0 35 ..................................... TTGAGTGACCCAGCGAGGACATTCAGGATTATTCG 2342918 37 100.0 34 ..................................... AGTCTACACTAACACTTCTACCATATCCCCTATA 2342847 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== =========================================== ================== 12 37 99.8 36 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : CCCCTTCTTTTTCGATCCCAATTTCGATGTAGAAGTGAAGCCCATCGAATTAGATAATATAGTAGCGAATGACAATATAAGCGATCGCTGGGATAACGCTAACATTCATGATTTTCGCGGAACTTATGGTGATTACGTGTTAAATAAGGTGTCTAAGGTTTTTCCAGAATTGCGGCGAACAGTATTATAGAGTTTAAAACCATTTATTCTTTGCTGAGTCACCTTTTCGTTAGATTCCTCTAGTCAAATGCGCGGAAGGGTAGGTGTACAAATTTTACAGTCACCAAAAAGTGCTTCTATCTCAACACCAGCAAGCATTTCACCTCACTAATCACCTTATGCTCATCCGCGCAATCTCTGAAATGTTTGCTATAAATGGGTTTTAGCTTTCAATCTGTCTCGGCACTCTTTCCAAACGAATTCTCTAATGCTATGATTGCTCTTGAACCGCGCAACCGCACCTTGAAAACTAAATATAGCTTGGGCTTCAGGCTCCCGCC # Right flank : TAGCTGTTTCTACTTTTTGCAATACCTTACGTTCTATATTGAAACCCAAAAATTGCTGGTAATACTGGGGAGGGAAGCAAAAATGTATGAGTCAATGGGTTTATAATTGGAAACTGTGACTCAGCGAGAAGTTTGCTCTAAGGCATCCCTGGCTCAAATATCCTTCCAAGGAAAGATGCCAAGGGCGAACGATGACAACTCATAATTGGAGCGAAGCGACTGGTGGGCAGTTTATTACAAGGAGTTAACCTGTACTTAATTGGCATGATGGGCGTTGGTAAGACGACAGTAGGGCCCTTACTAGCAAAACATCTGGGTTATGGGTTTTTGGATCTTGATGGTGTCATTGCCAAAGCAACGGATAAATCTATCAATCAGTTATTTGCAGAAGAAGGTGAAGCAGGGTTTCGCCAAATAGAAAGTGATGTACTTTCACAAGTTTGTGCTTTTACAAAATTGACTATAGCAACCGGTGGGGGTATTGTATTACGGCGAGAAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 4516568-4516363 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046703.1 Nostoc sp. ATCC 53789 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================== ================== 4516567 25 100.0 35 ......................... CGCTAGCTGGGCGGACATCACCAAACTCCCCTGTG 4516507 25 92.0 35 .................A..A.... CACTAGCTGGGCGAACGTTGCCGTAAGACGATATA 4516447 25 100.0 35 ......................... GACTGGCTGGAATAACGTTGCCGTAAGACGCTGGG 4516387 25 96.0 0 ........A................ | ========== ====== ====== ====== ========================= =================================== ================== 4 25 97.0 35 TCTGCGGGGTCGCCGTAGGGGTCTT # Left flank : TATTAAATCAGTCGCGGTTGTTGCCTGTAGCGGCATATCTGCAAGGTGAATACGGTTTAGAAGATGTTGTAATTGGTGTTCCCTGTCGTTTGGGATGCGGTGGAATTGAGAGTGTATTGGAATTGACACTCAGCGATGAAGAAAGAGAGGGTTTGCATACTTCGGCTCAATCTGTGCGTCAAAATATTGAGCGATCGCAGGAAATTTTGGCTAACAAAAATAATTCCTAATTCGTAATTCAACATGTCATATAGTGCAATACGGTTCGGTTAAAGTAAGAGACGCGATAAATCGCCGTCTCTACAAAGGACTGATTATTGTAAAGACGGCGATTTATCGTGTCTTTGTGGATAATTTATTTTTTGCAATTCCCTTACTACATAAAACAGTCCCTCTCCGAGTCGGAGAGGGACAGACTTGAACTTTAGTTCAAGGCAGGGAGAGGTTTGTCAAACTCACCAGAATATTTGTGCCGTTCGCGTTAACGACGGTAATCCTCA # Right flank : CGCTGGCTGGGCGGACATTGCGATCGCGGAATTCAGCATTTTGATCAGCTTGATCGCTGTTCGATCCCAAGAGTAAATCTTTCGCCTTTCGGAAAAATTCATTTACCATAATCTAGTCTCCTGATTTAAGTTCGTGTTTCCGACGTGCGCGATGGCGTTATCCTCCGGGAAACCCGCTTTATATTTACACACGCTTCGCGGATCTAGAGTGCTGGTGCTGCGGATGAAGTTATACCAGTTAGATCGCGACCTGTGGCACTCCGGTTATAGCCCTGGAATTCCCGATACTTTTGTGCTTCAGATTCGGGTACTCGGATTCCTTCTGCTGGTGGCGTTACCCAGTGAGCGCGATGTTCAGCATCGCGGTAGTATACGCGCCCGTTCTTGGAAAGATAGTACTTACCTTGCGCTCCTTCTTGGGGAGCATTCTTATGCTGGTTGTACATGTAGTAAAGTGCCGCAGCCCCCGCCAAAAGTGCCACTTTTTGACCTGTACCCAA # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTGCGGGGTCGCCGTAGGGGTCTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 4930753-4931585 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046703.1 Nostoc sp. ATCC 53789 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4930753 37 100.0 34 ..................................... ACGAGTAGATTGAATCTGTTTGCCATTCCACAAC 4930824 37 100.0 36 ..................................... GTAAGTACTTTTCTTTGATTACGGCGAGGGCACAAT 4930897 37 100.0 31 ..................................... ATTTACATTTGTTGGATCTGCCTTGAGGAAA 4930965 37 100.0 35 ..................................... ATTTACTTTCATTTACGCTGATAAACAGCAAGTAT 4931037 37 100.0 37 ..................................... CCGCCATCACCCCAGACTTACACAGAGGAAGAGCTAC 4931111 37 100.0 35 ..................................... GGGAAATTTAATTCTTTTAATCCTAAAGTGCTAAC 4931183 37 100.0 37 ..................................... GATATGGTGACAAATAACCCTGTAGCCGCCGCCGCTA 4931257 37 100.0 36 ..................................... GTGTAAAAACAAAACATAAAAATCCCAAGCCTTGAT 4931330 37 100.0 35 ..................................... GAATACTTCAAATACTCGCACCAAAAACCGTATCA 4931402 37 100.0 39 ..................................... TTCTCTCGTGTTGATGTAGACCAAACTGGGGTAACTGGC 4931478 37 100.0 34 ..................................... TAGCAATACCACTCGGTGAAGTTCCAGAGGTAGC 4931549 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 100.0 35 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : AAGAAGGTGTGGTGCATTATGGCGTTCCCAATATGCCAGGGGCAGTACCTTGGACAGCAACCCAGGCACTCAATAATAGTACATTACCTTATATCGTCCAGTTGGCGAACTTGGGAATTATGGCGCTAGAAGTTAACCCAGCCTTAGCTAAGGGTGTGAATGTGCAGAATCATCGCTTAGTGCATCCGGCTGTACAAGAGGTATTCCCTGATTTGGTAAATTAAGGTCTGTAAGGATTAGGCGATCGCTAATCAGACTAATTTTCTTGCCTTATGCGCGGATGGGTAGGTGTACAAAATGAGAAGGAGCAAAAAATGGCTACTGCTCCATCTATACAATGCTTTCAGGGCACTAGTATTTTTAAACCATCCGCGCACCTTATGGGGACTGGCTTTCAGCGATTTGCATCTTGTGCTATGACTATTCCCTATGTTATGATTCACACATTCGCGCAACTGCACCTTGAAAACCAAATACAGCAGCGCTTTCAGAAGCCAGCA # Right flank : CAATCGCCTCACTTTATCAATCGGCTATTGCAGATGTTAATGCTGCATTAAGGCAGTAATAAAATCAACTTTTTAAAGCATCACCAAACTACCTTCTGCTTCTTCTTCTAGTTCATAACCATTAGCTAATTTTTCAATTGCTTGGTCAAGCATACCCAAACCTTGATCTACCTTTTCAACTAAACTTAGCTGTCCTCGAAGTTCGGCAGCACCAACGAAACCCTTAGCATACCAAGTCATGTGCTTACGGGCTTGACGCACGCCGCGATCGCCTTTATATTCCCATAATGCTTGTAAATGATCTCTTGCACATTCCAAACGCTGAATCGGAGTAGGTGTCGGTAATATTTCCCCAGTTTTCAGGAAGTGATCGATTTCTCCAACCAAAAACGGATAACCCAAAGTTCCACGGGAACACATCACACCATCAGCACCAGTTTGTTCTAAACATTTTACCGCCGCTTCAACGGAAAAAATATCTCCATTGCCAATTACTGGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 4 5753671-5754475 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046703.1 Nostoc sp. ATCC 53789 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================================== ================== 5753671 37 100.0 35 ..................................... TTGCCAGTAGAGCCAGCCGATCTAGAAGTTGATAT 5753743 37 100.0 34 ..................................... CTTATATATATAGATGTGAATTACATTAAGATGC 5753814 37 100.0 32 ..................................... TGGTACATGGAAAAGGGATTGAATGGTTTCCA 5753883 37 100.0 37 ..................................... TTGCAGTTTTAAAGCCTCTGGTTCAGGCGATTCTTAT 5753957 37 100.0 34 ..................................... ATGAAAGATAATTATGCGAGAGTTGTTGCTATTT 5754028 37 100.0 35 ..................................... TTCCAAAAGACATTATTGAAACAGTAATTAAACCT 5754100 37 100.0 37 ..................................... GAATTATCTAAGCATTATTCAATCTGTGGTACACCAA 5754174 37 100.0 35 ..................................... ATTTGTAATCCCTGCCCTGCTGCGATCGCAATTTC 5754246 36 86.5 158 ............................C.A.-.C.G TTCAGTTAAGCATCTCTTTCTTCTCTCTGCGTTCTCTGCGCCTTGGCGGTTCGTTAAAAAAACGACTTTGGTAACAGAGTTTTAGCCTTAACTGAACCGTATTGCCCTATCAGGGATTGAAACTATTCCAATGCGAAAACCTATCAGAGGGATACGTA 5754440 36 86.5 0 .........A..C...........T....-......T | ========== ====== ====== ====== ===================================== ============================================================================================================================================================== ================== 10 37 97.3 49 ATTGCAATTCATTAAAATCCCTATCAGGGATTGAAAC # Left flank : TTCGATTCTCAAGTCTTATGGACAATGGATGCAACTGAGTGTGTTTGAGTGCGATATCACTCCTACTCAGTATGCTAAACTGCGATCGCGTTTATCTAAATTGATTAAACCCGATACCGATAGCGTTCGTTTTTATTTTCTCTGTGGCTGCTGTCAGCGAAAAGTCGAACGTATTGGCGGAGAACAGCCACGAGACGAAACAATTTTCTTTGCTGAGTCCCCTTCTGGCTAGGTTTCTGTATTTCAAATGCGCGGAAGGGTAGGTGTACAAATTCCACAGGTCTAAAAAAGTGCTTCTATCCCAAGTACAGTAAGGCTTTCAACCCATTCTTTACCTAATCATCATCCGCGCAATCTCTGAAATGCTTATCAAAATACGATTTCAGCCTTTAAATTTTCTTGGCGCTCTTTCCAAACGAATTCTCTAATGCTATGATTGCCCTTGAATCGCGCAACCGTACCTTGAAAACTAAATACAGCTTGGCTTTCAGCGTCCCGCT # Right flank : TAGTTGCAACGGCTCCCTGTCCCCTGTCCCCTGTCCCCTGCCTCCTTTAATTTAGCTTACCGATATAGCCAAACACGCAAGAGTGAAAGCAGTTGTTCAGTATCTACGGGTTTGGTGATGTAGTCTGATGCACCAGCTTCAATACACTTCTCGCGATCGCCTTGCATGGCTTTAGCTGTCAGTGCAATAATCGGCAAAGATTTAAATTGCTCGTTTTGGCGGATTAAGCTTGTTGTTTCGTAACCGTCCATTTCTGGCATCATTACATCCATCAAAACGACATCAATATCTGGTGTATTTTCTAACACGTTAATCCCCTCTCTGCCGTTTTCAGCGTATAACACTTGTATTTGATAACGCTCCAGCATACTTGTCAGCGCAAAAATATTACGCACATCGTCGTCTACAATTAGCGCTTTCTTGCCAGCGAGTAAGTAATCTATGGAATGCAATTGTTCAAGTATTTGTCGTTTGGGTGCAGGTAAATTTGCTTGGACTCG # Questionable array : NO Score: 7.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:-1.36, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 5 6709220-6707883 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046703.1 Nostoc sp. ATCC 53789 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 6709219 37 100.0 36 ..................................... TCGATTTGGGGAGGCGCGATATCGCCACCACTTCTA 6709146 37 100.0 37 ..................................... GTTGCAGATGCGATCGCTCCTCCATCACAATGTCCCC 6709072 37 100.0 33 ..................................... TTGAATTTCTCCTCTATTACCTTTGATTGTGGC 6709002 37 100.0 37 ..................................... TTTGGTCGTCATTGGATATGATGAAACGCCACGAAAA 6708928 37 100.0 35 ..................................... AAGGAAATTGCAGTAACCTAAGCAGGCTGTATCAA 6708856 37 100.0 34 ..................................... CTGATTATATAGCTCTACCACAGACCAACTTTGG 6708785 37 100.0 36 ..................................... GTAACTGCTGTTGTTGATATAGTGAACCCATAAATT 6708712 37 100.0 35 ..................................... TGTATACATTCTTACCATCCGGTGACTTACCTGTG 6708640 37 100.0 36 ..................................... GAGCATCTATATACGGAAAAGTAGAGGAAGGCGCAT 6708567 37 100.0 39 ..................................... GCCTAGATTTATCAGGGACTTTGGCGGGGCAATCTTTGA 6708491 37 100.0 33 ..................................... TTATTCCACCACCACCAAACGTTACACTTTTTA 6708421 37 100.0 33 ..................................... AAATAACAGCTACACAAGATGGAGATGTAGTTA 6708351 37 100.0 37 ..................................... TAATATTTAAACGACCAATAAGCTTCTTTGATATACC 6708277 37 100.0 35 ..................................... AATTGTTGTAGCATTTGGGTAAGCTTGAAGGAAAA 6708205 37 100.0 34 ..................................... GCCAAAGCAATTAAGGTGCCGGAGCGATCGCCCC 6708134 37 100.0 35 ..................................... GGATTTGACAATACAGGCATTAGAAAATCTTTACA 6708062 37 100.0 35 ..................................... ACTCTGAAAAGTAATTAATCGCTATGGAATTACAG 6707990 37 100.0 34 ..................................... AGTGCTTCACTTTTAGCTGGTGTGGCTATCAACG 6707919 37 91.9 0 .......................C........T...G | ========== ====== ====== ====== ===================================== ======================================= ================== 19 37 99.6 35 ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC # Left flank : TATTTCTTTCATCATCTCTACCTTAAAATTGGCGGAAACTTGATTTTTGGTTATCAGTACAGTAGTACGACAACAAATATTACAATTTATGAATCAGTTTACCGTAATATTTTAGATTCGTTTGCTGTCCAAATGTTTTTTCTGTGTGGCTCTTGTCAGAGAAAAACCGCCTGTATTGGCAAAGAAAAGCCACGGGATAAGCAATTTTCTGTACTGAGTTACTTTCTGGCTGGGTTCTCATATCTCAAATGCGCGGAAGGGTAGGTGTAGAAATTCTAAAGTCCCCAAAAAGTGCTTCTATTCCAAATACAGTAAGGCTTTCAACCCATTAGTCACCTAATCCTAATCCGCGCAATCTCTAAAATGCTTACCAAAAGACGATTTCAGCCTTTAAATTTTTTGGCACTCTTTCCAAACAAATTCTGTAATGCTATGATTGCCCTTGAATCGCGCAACTGTACCTTGAAAATTAAATACAGCTTGGGTTTCAGGCTCCCGCT # Right flank : CAATGAGAAAAGGGTGGACAAGTAGCCCACCCTAAACCATTATTTAATTAGTATTACTTGACGGGTGCTTCAGTAGCAGACTTACCAACAAGCATTGCGGTATTTTCGTCGCTTTCGAGGATACCGAATTCAATCAACAACTCTTCTAACTCTTCCATCTCAATAGGAGTGGGGACAGTGAGCTTGTCGTTGTTGATAATCTTGGTAGCCAATGTCCGATATTCGTTACTTTGATTACTATCAGGAGCGTACTCGTTAACAGTCATCCGGCGCAATTCTGCGTGTTGAACAATGTTGTCACGAGGTACATAGTGAATCATTTGGGTGTTCAAACGTTTTGCCAAGGTTTCGATTAAGTCGATTTCCCGGTCAACGTTACGGCTGTTACAAATCAAACCACCCAAGCGCACGCCGCCAGTGTGAGCATATTTGAGAACACCACGAGCGATGTTGTTAGCTGCATACATCGCCATCATTTCACCAGAGGTAACGATGTAGAT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 6 7120791-7120544 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046703.1 Nostoc sp. ATCC 53789 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 7120790 33 100.0 38 ................................. TAGTTTACAGTCTGCCATCTGATGAATCTGCTAGGTTT 7120719 33 100.0 39 ................................. GTGACAATTGATGGTGAAATTGTTGATAATGCTTTGTTT 7120647 33 100.0 38 ................................. ATTAAATCGCTACAAACCAGCAACCATAATGCTTGTTT 7120576 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ======================================= ================== 4 33 100.0 39 CAATCCCTAATAGGGATTTAAGATAATTGCAAT # Left flank : AAATGGGATGGTTATGTGGCTTCGCGCGATCGCCTCATGGCTTTCCTCGGACAGCGCCAGCCCTCTAATCCAGTATCCTTAGCAGGCGATGTACATTCCCACTGGGCGATGAATCTCAAAGCTAACTTTGATAATCCACAATCCGCCACAGTTGGCAGTGAATTCGTCTGTTCTTCAATTAGCTCTGGTGGTGATGGCTCAGACAGCACCCCCGCAGTTGAAGCTTACTTACCCGATAACCCACACATTAAGTTTTTCAATAATCAACGGGGCTATGTTCGTTGTTCCCTGACTCCCACAAACTGGCAGACAGACTATTTGGTTATGTCAAATGTCACAACCCCATTTGGCACGCTTAGTAAGCGGGCTTCATTTGTGGTTGAAGATGGTCGTCCAGAAATACAACAAGTTTAATGGTTTAAAATTCCCAGGTATTGACACCAGATAATCACAGATGGATACAGATAAATTATCAGTGTTCATCTGTGTTTTCATTTTCA # Right flank : CGCTGGCTTCTGAAAGCTTTGCCCTATTTAGTTTTCAAGGTTCGGTTGCGCGAATGCTGAAATGATAACACGATGAATTGTGATTTTGCTAGAGGCAAATGGCTGAAAACTAGTCTCCATAAGGTGCGCGGATGGTTTGAAATGCGTAGGCGTAGCCCGCCGCAGGCATCGCTCCCAAGTTCTTACATATAGCACAGTTCAGCCATTTTTATAGTTACCCCTTCCCCAACACCTACCCATCCGCGCATTTAGCAAAAAAACTAATCTGATTGGAAAGCTGCTTACTTATAAATACCCTACTCGATTAGTTAGAGTGATGCCGGGGTGGGCTACATCTACAGAATACCAGCACCCCCATGATTAACTTTATTTGCCAACGTCTTCAAAGTCTGTTATCGCACAAGCAAACTCCCTAAAAGCTGTTTTAATCAAAACCTCTTTCGTTCCCCTTTCCAGCGAAGAATTACGTATCATGTCTGTTAATTCTATGAACAGTAGAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAATCCCTAATAGGGATTTAAGATAATTGCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.70%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //