Array 1 95311-93452 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDRU01000011.1 Escherichia coli strain 710sc, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95310 29 100.0 32 ............................. CGAAAATCCCGCAACCTGGTTATTACCGGCGG 95249 29 100.0 32 ............................. CCCGTCACTGACACGCAGTGGCGCTACCATGA 95188 29 100.0 32 ............................. TGAAATTATCATGCCAGCGCCATCTTGATGAT 95127 29 96.6 32 ............................A TCGAAAAGCTGGCGGTAAACAAAACGCGTGAA 95066 29 100.0 32 ............................. TCGCTTTTGGCTGTCTGGGCGAATTCCGGAAC 95005 29 100.0 32 ............................. TTCAGGAAACCGGCGACAGCTCAGCTGATAAT 94944 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 94883 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 94822 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 94761 29 100.0 32 ............................. TTACAGCGCGTTGCGAAACGCTGCGGCGATGT 94700 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 94639 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 94578 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 94517 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 94456 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 94395 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 94334 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 94273 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 94212 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 94151 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 94090 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 94029 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 93968 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 93907 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 93846 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 93785 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 93724 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 93663 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 93602 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 93541 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 93480 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121771-121010 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDRU01000011.1 Escherichia coli strain 710sc, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121770 29 100.0 32 ............................. GACATCAGAAAGTTTGAACAGGCGCTGAACTG 121709 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 121648 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 121587 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 121526 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 121465 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 121404 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 121343 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 121282 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 121221 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 121160 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 121099 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 121038 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //