Array 1 32-488 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEPN01000048.1 Paracoccus sp. TRP Paracoccus_TRP_Contig_51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32 28 100.0 33 ............................ ATCATGCGGCAAAAGATCGCCGCGTGTTTTGCC 93 28 92.9 33 .........C....C............. ACTGTGTCCCTGCCGGACGACGCAGATGATGCT 154 28 100.0 33 ............................ ACTGTGTCCCTGCTGGACGACGCAGATGATGCT 215 28 100.0 33 ............................ CCCTGACGCGGCGGGCTTGCGGCTCGTTGGCAG 276 28 92.9 33 ....TT...................... CCATTCCCGGCAGTGATCGTGGTCGCGGAAGCC 337 28 100.0 33 ............................ CTGCGCTGATGATAGCTCTCATGGCCGCAGATC 398 28 100.0 33 ............................ CGGGTCAGGGGCTGCCGCCGCTGGTTGTCGTCT 459 28 78.6 0 .................T...T.CTCA. | CT [478] ========== ====== ====== ====== ============================ ================================= ================== 8 28 95.5 33 GGCTCCCCCGCACCTGCGGGGATAGACC # Left flank : CATGCGGCAAAAGATCGCCGCGTGTTTTGCCG # Right flank : CTCGGTTCGGCACTCGGTTGCGTACAACTTCGGCACCCGGTTGCATGACATTCGGCGCCAGTAGCTCCAGAAGTGCCGGTCTCAGAGCCAGCGAAGGCGAGAAGCGCGGAGACCTCAACTATCGCAGCGGTTCTCGCCTTCGCTGTTACTGCCAGTGACGGAGACAAAAAGGGCGGAAAGCGGTCATTCGCTGCGCCGGTCGTGGAGGTCAGCTACCGGTCACTGGGTTAAGCTGATCGTGCCGGACAGTAAGCTTGCAGTTGCGTGACGAAGCAACACGGTGGATTGTGGCTGCAATGTCACCGCCCCGAACGACGTGCTTACGATCCATTGCAAGCAAATGATGCATGAATTGTAGATAGGGAAATAGCGCTAGTGCGATCCGAAGAACAGTACTTTCAAGAGTTGATGGAAGTTTGCCGAGCTCCTGGCTTTGCTCATGCGATCGCGATGTTCTGTTTCCGGGACAATTGGATCGGCTTCAAAGATCAGATGACCGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACCTGCGGGGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 21-334 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEPN01000046.1 Paracoccus sp. TRP Paracoccus_TRP_Contig_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================================== ================== 21 29 100.0 32 ............................. GGCGGGGTTGAGCTCCATCCCGAAGCTACAGA 82 29 100.0 32 ............................. CCCAAATCCCGGCCCCCGGCACCGACGAGGCC 143 29 100.0 134 ............................. CGATTGCATAGACTCCATCCCGAAGCTACAGAGGCTCCCCCCCCCCCGCGGGGGGGGGGGAGCCATATTGGCGGACCCGACCAGGATGCTGCCCCCCCCCCCCCCCGGGGGGGGGGCCCCCCCCCCCCCCCGAT 306 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================================================================================================================== ================== 4 29 100.0 66 GGCTCCCCCGCACCTGCGGGGATAGACCC # Left flank : CTGGTCGGGTCCGCCAATATG # Right flank : TGGATTTCCAGCGGCACGTCATCGGTGCGGTAGGCTCCCCCGC # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-3, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACCTGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 21-810 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEPN01000047.1 Paracoccus sp. TRP Paracoccus_TRP_Contig_50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================================= ================== 21 26 100.0 35 .......................... CCCCAACCCGCGCCGCCACCACCGGACCCGTTGCC 82 26 96.2 35 .....................G.... CCCCAACCCGCGCCGCCACCACCGGACCCGTTGCC 143 26 92.3 35 ...........C.........G.... CCCCAACCCGCGCCGCCACCACCGGACCCGTTGCC 204 26 100.0 35 .......................... CCCTGATGGTGCAGCTGACCGCGACCAACCCGGCG 265 26 100.0 35 .......................... AACTGATGGTGCAGCCGCAGCCGGGGCCATAGGCG 326 26 100.0 35 .......................... CCCACGACCTATGAGGTCCGCGCCCGGCTGCTATC 387 26 100.0 35 .......................... GCCACGACCTATGAGGTCCGCGCCCGGCTGCTATC 448 26 96.2 45 ...........C.............. CGGGGATAGACCCGCGGTGGATGCGTCGGTATGGATCAGGCCAAA 519 26 100.0 35 .......................... GCCACGACCTATGAGGTCCGCGCCCGGCTGCTATC 580 26 100.0 35 .......................... CCCCGGGGTTGTCGGCTATGCGATTAAACTCGACG 641 26 100.0 55 .......................... CCCCCGACCTATGAGGTCCGCGCCCGGCTGCTATCGGCTCCCCCCCCCCCCCGCG 722 26 88.5 35 ....T.......GG............ CCCGAGTTCTTCTGACATTTGGGGGTTCTCCTTTC T,A [724,727] 785 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ======================================================= ================== 13 26 97.9 38 GGCTCCCCCGCACCTGCGGGGATAGA # Left flank : CCACCACCGGACCCGTTGCCG # Right flank : C # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACCTGCGGGGATAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-12.10,-12.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [8.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //