Array 1 108501-105540 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQEM010000003.1 Salmonella enterica strain CR51 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108500 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 108439 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 108378 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 108317 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 108256 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 108195 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 108134 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 108073 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 108012 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 107951 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 107890 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 107829 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 107768 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 107707 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 107646 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 107585 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 107524 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 107463 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 107402 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 107341 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 107280 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 107219 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 107157 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 107096 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 107035 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 106974 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 106913 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 106852 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 106791 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 106730 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 106669 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 106608 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 106547 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 106486 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 106425 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 106364 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 106303 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 106241 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 106180 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 106119 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 106058 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 105997 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 105936 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 105875 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 105814 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 105753 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 105691 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 105630 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 105569 29 96.6 0 ............T................ | A [105542] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126133-124760 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQEM010000003.1 Salmonella enterica strain CR51 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126132 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 126071 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 126010 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 125949 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 125888 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 125827 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 125765 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 125704 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 125643 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 125582 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 125521 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 125460 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 125399 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 125337 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 125276 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 125215 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 125153 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 125092 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 125031 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 124970 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 124909 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 124848 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 124787 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //