Array 1 1-356 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNJI01000022.1 Streptococcus agalactiae strain M50 NODE_23_length_356_cov_96.386100, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 31 86.1 30 -----............................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 62 36 100.0 30 .................................... AACCTTGATAGGCGTACTGTATGGATTCCA 128 36 100.0 30 .................................... CTACTGTATTATCTGAAATAGTATCGTTTT 194 36 100.0 30 .................................... TCTCGGGAAATGCAACTGATGCTGCAATCA 260 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 326 31 86.1 0 ...............................----- | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 95.4 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 268028-268723 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNJI01000001.1 Streptococcus agalactiae strain M50 NODE_1_length_543405_cov_126.947153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 268028 36 100.0 30 .................................... AAAAATACTGTAAAATCGTAATCTACATAA 268094 36 100.0 30 .................................... AGACATTTACCTATCACTCTAGAAAGTCAT 268160 36 100.0 30 .................................... CATACAAGGACTACCATCAACAGTCACATT 268226 36 100.0 30 .................................... GGTACGTACCCAACGATATACCATGCAGTA 268292 36 100.0 30 .................................... TAATTTCCAATACTTACGATATCTTCGTCA 268358 36 100.0 30 .................................... TCATACGCACAATGAGGCTTCAAAAGCTTC 268424 36 100.0 30 .................................... ACGTACCCAGCGATATACTACGCAGAATGG 268490 36 100.0 30 .................................... CGNNNNNNNNNNNNNNNNNNNNNNNNNNGT 268556 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 268622 36 100.0 30 .................................... AGAGGGGAAAATATCAATGCCGAATGCTGA 268688 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CGATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 140991-139638 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNJI01000004.1 Streptococcus agalactiae strain M50 NODE_4_length_204298_cov_139.734228, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 140990 32 100.0 35 ................................ TAAAACAAAAAACGATACTACATCAGATAACACAG 140923 32 100.0 33 ................................ ATTAATTCATGATATTGTTTTCCAGTTTAACGA 140858 32 100.0 33 ................................ TTTAATGACGTCTATAACCTCTTCAGATGTTTT 140793 32 100.0 35 ................................ TAAAATAAATCAAGTTAAAAAGTACCATACAACGC 140726 32 100.0 34 ................................ TTTGACTTCAAGATATATCATGCCACCACATAAT 140660 32 100.0 34 ................................ TAGGTTAAGTCCTACTTCTTGTCGGTTAACAACC 140594 32 100.0 34 ................................ TTAAATGGTTATTTGAAGAGTACAAGTTAAGAAT 140528 32 100.0 34 ................................ TATTCAAGAATATTAAAGATATTGAAGTGAAGTA 140462 32 100.0 34 ................................ AGGTATTAAAGAATTGGGCGGTGACCCATTCAAA 140396 32 100.0 33 ................................ AATATATTTTGGCTGTGTTCTTGCGTAATAATT 140331 32 100.0 33 ................................ CTTTCTTTGTAGCTCCTTCTATTATACCATTTT 140266 32 100.0 33 ................................ AATTTCATCTGTTAGGCTCCTTTTTCGCTTTTG 140201 32 100.0 35 ................................ AATCATAAGCTATCTCAACGCAATCTTTAAGTCGT 140134 32 100.0 34 ................................ AATAAAGTCTGCAAATGTAAAACTTTTTAGAAGT 140068 32 100.0 34 ................................ TTACTGTATTAACTTCTGTACCGTCTGAAAATTG 140002 32 100.0 36 ................................ ATTCAATGAATTTAGGTTCGTGGGATATAGAAAATC 139934 32 100.0 34 ................................ TATTTTATATTAAAAATAAGACTACCATAATTAT 139868 32 100.0 36 ................................ ATGTTACCTCCTTTTAAAAAGGTCTATCCTTGCCCC 139800 32 100.0 35 ................................ AAAAGATTATTGCCTTTTTTAATAACACGGCTAAA 139733 32 100.0 33 ................................ TAATAATGATTATTTTTTTATTAATTCATTATC 139668 31 78.1 0 A....-.............T..A.T..C..C. | ========== ====== ====== ====== ================================ ==================================== ================== 21 32 99.0 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : ATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTAAATTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCAAAGGTGAGGAACAGTGCATTTTATGGCGCCCTACGCCCTGTCTTATTTACAATATCTATTTGATGCGACTATAACTCATGCTAGTGGGACTGCGACTTTTCCAAAAGGTCAAAGCGATAGTCAATCCAAACTACTCTTGCAATTATCAAATGGGGTCCTCGTAGATATCTTCTTGACAACACGTTTAAATTTACCGCATGAAATGATTATTTATGGAACTGAAGGTCGTCTAATCATTCCACATTTTTGGAAAACCACTCATGCAAAATTGGTGAGAAATGATACTAGTGCGCAAACGATTCAAGTTGACATGGTTAGTGATTTTGAGAAAGAAGCTTATCATGTTAGTCAAATGATT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //