Array 1 5334-7436 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCPE01000108.1 Salmonella enterica strain NGUA-32_S8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5334 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 5395 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 5456 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 5517 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 5579 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 5640 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 5701 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 5762 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 5823 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 5884 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 5945 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 6006 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 6067 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 6128 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 6189 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 6250 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 6311 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 6372 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 6433 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 6494 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 6555 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 6616 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 6677 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 6738 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 6799 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 6860 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 6921 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 6982 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 7043 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 7104 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 7165 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 7226 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 7287 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 7348 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 7409 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 25069-26989 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCPE01000108.1 Salmonella enterica strain NGUA-32_S8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25069 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 25130 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 25191 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 25252 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 25313 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 25374 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 25435 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 25496 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 25557 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 25618 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 25679 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 25740 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 25801 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 25862 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 25923 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 25984 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 26045 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 26106 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 26167 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 26228 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 26289 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 26350 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 26411 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 26472 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 26533 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 26594 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 26655 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 26716 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 26777 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 26838 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 26899 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 26960 29 100.0 0 ............................. | A [26987] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //