Array 1 53394-54353 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOWR01000006.1 Streptococcus sp. 'caviae' strain Cavy grass 6 NODE_6_length_150267_cov_204.705, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 53394 36 100.0 30 .................................... TTAGCATTTTTTTGCAACTCTTGGATAAGT 53460 36 100.0 30 .................................... TTCTGGCTTGTCAACAACAGGATAAGTGTT 53526 36 100.0 30 .................................... AGCACACTAGATGATGTATCTGACGGACTG 53592 36 100.0 30 .................................... ATGTTCATCTGCCGTCCATTGTATGCTTCC 53658 36 100.0 30 .................................... CCGGTTTCATCTGCGTACTTGATATAAAAC 53724 36 100.0 30 .................................... TACGGAAGCGCACCAACTTTTAATTGACTA 53790 36 100.0 30 .................................... CACTCGGTGAGTTTGCAACGCTTGATAAGT 53856 36 100.0 30 .................................... CCGTCATCAAGACCGTTTACTGTGATGGTT 53922 36 100.0 30 .................................... GAAACAGCGCTTTTTGACACAGGTTATGCA 53988 36 100.0 30 .................................... TCTCCGAAATTAAGACTTTCCCCCGTCTTC 54054 36 100.0 30 .................................... AGCTTTTGATGCAAAAAAACACCTATTCAT 54120 36 100.0 30 .................................... TTGTGTGCATTTATATTTGTTAGCTACAAC 54186 36 100.0 30 .................................... TATGGATAAGAGAGATGCGGATATGTTGGC 54252 36 100.0 30 .................................... ACCCAGACTATGTAACAGCTCAGCCAGAGG 54318 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.8 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GGAAGAAGAAGGGTACTGGGTTGAATTTCCTGAATTTGGCGGAGGTACGCAAGGGAAGGATTTAGAAGAGGCCATGAAACATGCGCGTCAAATGCTGGAAAGTGTATTGGCATCTTATCTGGACGAGGGAATGCAACTGCCTGCTCCAAGCGATATTCGTAAACTATCTGCAGAGGATGGTTTTGTTAGCCTGATTCAGGCTGATCCCAGTCCTTACCTTAGAAATAATAAAGCTATCCGAAAAAATGTAACAGTTCCTGAATGGCTGGTGCGATTGGCAGATCGCAATCAAGTGAATTATTCTGAAGTGCTGACCAAGGCTTTAGAAAAGAAACTGCAATTGTGAAATAGTTGAAAGTGCTAGAAAGATTGATTTCTAGCGCTTTTTGAGGTATAATATAAATAATTAAAACGTTTAAAAAGGAATCATTTTGAAACTGAAATCTGGCTGAGATGAATGGCGCGATTACGAAATTTCGAGACGAAAATTGGTCCACGAG # Right flank : TCTAAATTTGAAATTGATTTGTTGATTTATAACCTTTTAGGTTAGATCTGTGATAGGGGGAGAATCTACAGATTCTCTTTTTTAGTTTTGTTATTAAAAAACTGCAGCGGGTTCGCTGCAGTTTCCATTATATAGCTTTCAGTCCGTTTCGCGTCCTTTGGTGCGAAACAAATACCACCCGCTATGCGGGTGGTTGTTAGACATGATAGTGTCAGGTGATAACAGTACCGATAATTTCTATGTCGTCATCTTCTTGCAAAATAATATCGTCATAATGAGGATTGAGCGAAATCAGCCTGATCTCATGGTCTTTTTTGTATAGTTTTTTGAGATAAGCTTCATTGTTGACAATGACAACGATAAATTGACCGTGGTAAATTTCCTGTGTTTTCTTTACAAAGATAACTTCACCGTTATAAAACAGAGGTTCCATACTGTTGCCGTTGACCCTGAGAGCAAGATCGTGTTTAGGAATAGGTGCCGGATACTCGATGGTCTCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //