Array 1 91922-93278 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYPG01000008.1 Listeria welshimeri strain CDPHFDLB-F14M01633.75-2 F14M01633-75-2_Contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 91922 36 100.0 30 .................................... TTTTAAGATATCTTTAAAACCGCTCCCTAC 91988 36 100.0 30 .................................... TTGACCTTTGTTATGATATACACCTGTTTA 92054 36 100.0 30 .................................... ATACATGTTGGAAAAAGAATATGGTATGTA 92120 36 100.0 30 .................................... TGAAACTAAAGTTCAAACACAAGCGGGGTT 92186 36 100.0 30 .................................... TATATTGATTTTATCCTTAATTTTTGTTGG 92252 36 100.0 30 .................................... GATCATCTTGATAAAGGAAAAACGCTTCAT 92318 36 100.0 30 .................................... ATGATGACTTTCATCAATTATGATTAACGA 92384 36 100.0 30 .................................... TGACCTCGATTATTACCGTTGGATGTATCT 92450 36 100.0 30 .................................... GTGTTAATGATGCGGTTGTAGTGGGGGTGT 92516 36 97.2 30 ...A................................ AAATAGTCCTTAAAATACAACGGGACATCC 92582 36 100.0 30 .................................... TGGGTGAATGACGAACGATGGTGAACCCCC 92648 36 100.0 30 .................................... ATTGATGAACAATCATATTATTGATTTGAC 92714 36 100.0 30 .................................... GTAAACCAAGGACATCATCAACACCATTTG 92780 36 100.0 31 .................................... TATTATTTGGGACATTTTGATAGTCCAGCTA 92847 36 100.0 30 .................................... AGCAATTTCTTCATCAGTTAAATGATACTT 92913 36 100.0 30 .................................... AAGAATGAAAACTGTTGATACTGTTTTGCG 92979 36 100.0 30 .................................... TTATTTCTTCCTCTGTTTCATATTCTTGCA 93045 36 100.0 30 .................................... GCGTGGAGTTTTGTCAATGGTGTAACCTGC 93111 36 100.0 30 .................................... TAAAGCATATTAGTAAGACACAAGCGCAAT 93177 36 100.0 27 .................................... GAATATTCTCCCCCATCGCTAACAGGG 93240 36 83.3 0 ............CA.....C.....T.A.......G | A,A,C [93265,93271,93274] ========== ====== ====== ====== ==================================== =============================== ================== 21 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGGCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTTCGCAAGTTACTTTAGATTCTGATTATTTTTTACACGTAGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACAAAACATGGTTAAATTTAAAAAGGAGTTAGGTATCTATATGACACAGTATCACTATCTTACTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATTGGCAAAAAAATTGTTACGAGACTTAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAGGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //