Array 1 127876-129001 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMBW01000028.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN00326 CFSAN00326_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127876 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 127937 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 127998 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 128059 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 128120 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 128181 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 128242 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 128303 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 128364 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 128425 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 128486 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 128547 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 128608 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 128669 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 128730 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 128791 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 128852 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 128913 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 128974 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 145260-146924 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMBW01000028.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN00326 CFSAN00326_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 145260 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 145321 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 145382 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 145443 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 145510 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 145571 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 145632 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 145693 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 145754 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 145815 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA C [145824] 145877 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 145938 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 145999 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 146060 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 146121 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 146182 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 146243 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 146304 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 146365 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 146468 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 146529 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 146590 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 146651 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 146712 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 146773 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 146834 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 146895 29 96.6 0 A............................ | A [146921] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //