Array 1 3761-8971 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNB01000032.1 Orenia metallireducens strain MSL40 Ga0139028_132, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3761 37 100.0 36 ..................................... GAGTTTATTACAAATAGACGATAATTATATTTATGT 3834 37 100.0 38 ..................................... TTTTTAGGTTTACCACAGGACACACCTGCTTTTTCTTT 3909 37 100.0 35 ..................................... AACTAATGAAAGCAAGGTCAATACTGTTGACAAAG 3981 37 100.0 41 ..................................... TTATTGTGCTCTGGTGTTCTATAGGATGAATTGATTATAAG 4059 37 100.0 36 ..................................... AACAGAGCAATCAAATATTCCATCTAAATCAAAATA 4132 37 100.0 36 ..................................... TATAATGGTATGCCATACAGAAATAGAAGATTCAAA 4205 37 100.0 37 ..................................... CAAGGAGGTAATAATTTATGCAAAAATGCAGATATTG 4279 37 100.0 36 ..................................... TGAAATGCAATGCTTGAGTGCAGGTAGTGAGCTGAT 4352 37 100.0 39 ..................................... TATCTAAGAATCCACCGTAATATTGAGTATTACCCCAAA 4428 37 100.0 37 ..................................... AAAAACACGATAATACAGTTAATCTCATTTGTACATG 4502 37 100.0 37 ..................................... CAGACTCTATATATATTCTTCTTCCTATGTCGATGAG 4576 37 100.0 37 ..................................... GAAGTCCATCCTGCTTTTAAAGTTAATGGAGAAATTA 4650 37 100.0 36 ..................................... GAAACCAGGTCGTGCTGCTTTAAGTAGATATATCAA 4723 37 100.0 36 ..................................... CATGGGATTGATTGCAGAAAAGCTAACGGAGATATA 4796 37 100.0 37 ..................................... TTAGCTCCCTTGACCCCTCTGTCTGCTCTATTGGTCA 4870 37 100.0 37 ..................................... ATATTACCATCCTCCTTTGTATAGGTTGTACTATTTT 4944 37 100.0 36 ..................................... ATATAACCACCCCTTAAAACACATAGAAATGTCTAG 5017 37 100.0 37 ..................................... TGGAACCGTAGGAGATACAAAAATAGACGCTTTGAGA 5091 37 100.0 38 ..................................... TATGTTGGGGGCTACAGGGAAAACAGTCAGGAGGTGGT 5166 37 100.0 35 ..................................... AAAAGAAAGATGGATTAGTAAGCAAGATGTTGGTA 5238 37 100.0 36 ..................................... TACCTTTGTATTAGATTTATTTTATTTTGAGGATGC 5311 37 100.0 37 ..................................... TTCCTAATTATGTTGATGATATAGAAGATTATTATAA 5385 37 100.0 37 ..................................... TTTGAGCCAGACAAATCCTCCTTTTGAAGCAACTGCA 5459 37 100.0 37 ..................................... GGTATTCCAGTTTCTCTGCTTACATCCTCGAATGCTT 5533 37 100.0 37 ..................................... AACACATCTAGTGCTGATAAAGCTAGACTAGGAATGA 5607 37 100.0 37 ..................................... TTCTAAAACCCAATCTGCATCTATTGACGGAATAGCG 5681 37 100.0 37 ..................................... GAGAAAAGAAATTAATCCATCGTATATAAAGATATGC 5755 37 100.0 37 ..................................... TTGATTGGTTGACAGCTATTGAAGCTTTAAGTAATGA 5829 37 100.0 35 ..................................... TCTTCTTCAGGGTGTTGCCAACATCTATATTCTTT 5901 37 100.0 35 ..................................... TGCTAATCTCCCAGCCATTGCCGATAACTCTTGAC 5973 37 100.0 37 ..................................... GCAGAAGCCGCACAGAAAGCCGCAGAGGAATGGCGGA 6047 37 100.0 39 ..................................... TTCTTATAGTCAGGTGGTGGGTTCTGTATCATCCCTTCT 6123 37 100.0 37 ..................................... CTATGATATTCGTGTTAGAGGTACGTTGATAAATGGC 6197 37 100.0 38 ..................................... TCTTAAGTCTGTGTCTGCTACTGTAATGTTTCCTACTT 6272 37 100.0 37 ..................................... TCCAAGAAACCGCCGTCAAACAATATGCTCTAAGCAA 6346 37 100.0 37 ..................................... CGTTAATTATCCATGTGTTAGTTTTGATTGTTATTTT 6420 37 100.0 36 ..................................... AAGGTTCAGCAATCAAGGCAGCAGTGGCTATATGTA 6493 37 100.0 37 ..................................... GTAATCAAGAATTAGCAGAACACGAGACGATACAAGT 6567 37 100.0 36 ..................................... AATCAAATTTTCAGCTATAGTTGTTTTTCCCATACC 6640 37 100.0 36 ..................................... CATAGTCAACCAAGTGCCGACATGGCGTAATTATGA 6713 37 100.0 38 ..................................... TGGTATAGTAATGAGAACGGTTTATATAGCTACGATGA 6788 37 100.0 37 ..................................... TTATCCACTTGACTTATCGCCCCATCAAAGGACGGGT 6862 37 100.0 37 ..................................... TCAACGCTTATTGTGGCGACCCCACTTATGTAGAAGA 6936 37 100.0 35 ..................................... AAAGGTAACTGGCAGGTCTTTCCGACTTATGAACG 7008 37 100.0 39 ..................................... TCTTCTAATTCTTTGTTGTAGTCTTCAATCATACAACAA 7084 37 100.0 37 ..................................... AATTTTGATATGGTTTTTCAGGCAGGTTTAGAAAAAG 7158 37 100.0 37 ..................................... TGTTCTTCTGTTATCCTGTACCCTCTGCCAACCTTAG 7232 37 100.0 36 ..................................... CAATAGCTTTTGCTCTTGAACTTATAGGCAGAACCT 7305 37 100.0 37 ..................................... CTACAATAGGACAAACAGTAAACGAAGGACCACGAGC 7379 37 100.0 38 ..................................... TCAAGACCGGCACGGTTCTAATCCGACACGGATGAAAG 7454 37 100.0 38 ..................................... GAGTGGATGGCAACCCTAAAAGATACATTTGACCCGTT 7529 37 100.0 41 ..................................... AGACTTAAATCTTTTTCCACTCTTCTTTTTTTGATTCTAGT 7607 37 100.0 38 ..................................... AATTTCCAAACACATATCTGGCAAGCAGGTGCGAATGT 7682 37 100.0 37 ..................................... CCCTAACTACCGTTAAGTTAGGGATTTGCTTCTTGAT 7756 37 100.0 37 ..................................... ATGTATTCCCAAAATGCTAAAGCAAATTAGGGATAAT 7830 37 100.0 35 ..................................... TATGTTTGTCGGACTATTAATAAGGAGGGTAAAAA 7902 37 100.0 35 ..................................... TGATTGCTCCACTCTTCTAGCTCTTCATTTTTCTC 7974 37 100.0 37 ..................................... CAAAGTAACAAGAAACAGAACGGTTTTTACAGAAGAT 8048 37 100.0 37 ..................................... AAAGATAATAGAGATGCTGATGTGGTTATTCCTATCA 8122 37 100.0 36 ..................................... CTAGAAGAGGCAATTAATAGATTCACAATAGAAGAT 8195 37 100.0 38 ..................................... GGTGGCGGAATTGGATATTCTGGTGGCGGCATCTTCGG 8270 37 100.0 38 ..................................... GTATCAAAAGGATAGAGATACATGAGAGCTGGATTGAC 8345 37 100.0 37 ..................................... CTAATAATTCATTTATTAATGCTACTGGTTTTTGAGT 8419 37 100.0 38 ..................................... CTTTATTTGATTCTAACCTGTCGATTATTCCACTACTT 8494 37 100.0 38 ..................................... ACTTTGTGGATTCTCAGAGTGTATTGTCTGGTGGTGGT 8569 37 100.0 34 ..................................... GGAAGTGATGTGATGCCTAACACTAAAGAAGTAG 8640 37 100.0 36 ..................................... TGCTTAATGCGGTATTATCAGACTTGAAAGACCCGA 8713 37 100.0 38 ..................................... GAATCATTCCCGCAATTTGAAAAATGGTTGTATGATTT 8788 37 100.0 36 ..................................... AATAGACCTTAATGCTACTCAGTCAGCGGTTAGAGC 8861 37 100.0 37 ..................................... CTCCTTTTAGATTGCTGATAGCTTGATTATAAGTAGT 8935 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 71 37 100.0 37 CTTTCAGTCTCCTAGTTAATGGAGTATAGTTTGTAAC # Left flank : GAGAAAAGCTCTGTACCCAAGCTGAAGGTGAGAGGTTGGTATCTTTTACCAATACTGCTGATCCGTTGTTTATGATTGGAGCGGTGGCAAAGGTAACAATATGATATAAAAAAACAATTTGAACAAGATGACCTTTTTAAAGATTATCTCATATATTAAATATCGTATCTTTAATATTTTCTACTTCTTTTTCATTCAAGTTAGTTATTTTAACTATAACTTCTACTTTGATTCTATTTTTTGTATTTTCATTAATATTTCTTTTCTAACTTTCTTTATACCTTACTTGGTCCATACCTTTTCTTTCGGCTTTCTTTAATACCATCTTCTCATCTCTTAACCATTCTAACTTAACCCAGTTTCATAAGTTCTCTCTTTTTTTGGTTAAGCTTATTGTAACTAATACTTTAATTGTTTTTTTTGAATGCTTTTAACCTCAACTAATAGAGTGGGGTTTGTAATATTATTCGTTCTTGCATAAGACCAAAAGTTAAGACTAT # Right flank : CCGCAAATTTTAAAAAGTAAGAAGCCTATTGTATCAAGGGTTTATAGCACCTATGATATTACAAATTGCTCACAATTTTTCGCAAAGCAATTCTTGCAGAAAAAGCCTAGGGTTTTGCGAAAGCACCTTCAACCCTTTATACTACTAGACTTTTAAGCACTTTAAGATTATTCCTTCTTTTCAATGTACAAATACAAAGTGTTATTTATAATAGGTTTGCGAAATCCTACTCTTATTATTTTCTATACTAAACAAATAATTCCTTTATAAAAAGTAAATTTTAACCTTTTATTATCTTATAATTCCCCAATCCAAAAACTGTATTCTTGCCAATATGAGTGTACTGTCCCAATATTAGATATGGTAAAAACTCTGCCAGTTCTCCTTGATATTCTAGTTCTCCTATTACTCCATACATCTTTATTCTTTGTTTTTGTTTATTTGAATATCGCTCCCAATCTTCCCACTTAGTATGATCTTTGACTAATTTAATACCCTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGTCTCCTAGTTAATGGAGTATAGTTTGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.10,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 25995-23589 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNB01000032.1 Orenia metallireducens strain MSL40 Ga0139028_132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 25994 37 100.0 35 ..................................... TCTCTAAAGACCAAACCGTGGTAAGAGCTAAGATG 25922 37 100.0 39 ..................................... AATTCATAGTGTCCTATTTCACTTATAAATAAGCTACTT 25846 37 100.0 37 ..................................... ATATCAACAGAAGAAAGAGCCTGTTTTGTCGGCATGT 25772 37 100.0 37 ..................................... TTTCCATCTTCGTCAGGAACCACCTTGATATAATCAT 25698 37 100.0 38 ..................................... CTCGTCATAATTATAGATATTGCTTAATGCATTAGATA 25623 37 100.0 38 ..................................... TTCACCAGCTGCACGATTGACTCTCTCAATATAAGTTA 25548 37 100.0 37 ..................................... ATATTTACCTTTACTACATTAAAAGGTGGTCAGTTAA 25474 37 100.0 38 ..................................... CTCTTCACCTATGTAAATAGTCTTGTTATCCCCTCCTA 25399 37 100.0 36 ..................................... GGCGTAAAAATCACTTGGGACAGACCTGACTATATT 25326 37 100.0 39 ..................................... CTTATGACATTGCTGATCGTGGGAGTAGGTGGTTTCTGA 25250 37 100.0 37 ..................................... ATTTTAACCTCTTTCCTTTTTGCTGCAACCCTCTCAA 25176 37 100.0 37 ..................................... TTCTTCATATTCTGCAAGTCCAATTATAGCTATAGAA 25102 37 100.0 37 ..................................... TTCTATATACTCCATGATGTAATCTAAGCGTTCAAAA 25028 37 100.0 35 ..................................... TTATGCTATAGCCATAATTCTCTGCTATTTCCTCG 24956 37 100.0 35 ..................................... CTTTACTTTGTGAATATAAATTATTCAAAGTTAGA 24884 37 100.0 36 ..................................... TTTTATCACTCTCCTGTAAGTTTATTTGCTGATTTA 24811 37 100.0 36 ..................................... CCTTTTGTACTGGTTCTCATACTCCATCCTTCTGCA 24738 37 100.0 35 ..................................... TCTGCTCTATCCTCGGGGCAAGCCTACGAGGTTTG 24666 37 100.0 37 ..................................... CTTATGGTAGTTTTAAATCTAGCGTGTCGCCACCGTT 24592 37 100.0 35 ..................................... TTTCGTGAACCTTAGCTAATTTCTTTTTAGCTTTA 24520 37 100.0 39 ..................................... CCTTGTAAACGAGGGTAGAATCAACTACCCTCCTATATT 24444 37 100.0 38 ..................................... AAATCTAGTCTCTACCTCTAAATACCCATGCAACTCTC 24369 37 100.0 38 ..................................... GTACATCACAGATAGATACAGAAGCAGAAATGTTAGCC 24294 37 100.0 37 ..................................... TCCAGTTCCTCATTTTTAATTATTAGTTCTTTCTTAA 24220 37 100.0 37 ..................................... AGATTTCAGTTCGATATGGCTATCCAGCAATCGAAGT 24146 37 100.0 37 ..................................... CCATCATAACCCATAGGTATGTCTATTAAGCTACATA 24072 37 100.0 38 ..................................... CCATTCTAGCAATTCATCCTTTAGCCTAATCCCTTTTA 23997 37 100.0 36 ..................................... ATCTTCAGGAAAGGCTTCGTCAGGTAAAGTTGGTAA 23924 37 100.0 38 ..................................... CTATTCTCTGCATTACTTCTAATGTCTTAGATTGATAA 23849 37 100.0 38 ..................................... TGCCCCGACCATGGAATCCCCTTGAGCTTTTAGGTAGA 23774 37 100.0 37 ..................................... AGTATATGATAATGCTCCAAGCTTGATTAATCTCATA 23700 37 100.0 38 ..................................... AATTGCAAGTATTATAGAGAAATAGAAAGAAAATGTAC 23625 37 86.5 0 ..............................T..TGTT | ========== ====== ====== ====== ===================================== ======================================= ================== 33 37 99.6 37 ATTACAAACTATACTCCATTAACTAGGAGACTGAAAG # Left flank : GTTAGTTTTTAGCTTATGTTTATAATACGAAACTGTTGGGATAATACTTTAATAGAAAGATTTTTGGATACATTAAAAACTGAGTTAATCTATCATAAAGTTTATCCAATTAGAATAAGTAAGGCGAGATATATTTGGACATATTAAAGCTTTTTATAACAGATTTAGAAGGCATATAACTTTAAATTATAACAATCAAGAAAAGTACCAAAACGAGAGAAAAACACTAAACTATATATTTAATTTAATGGGGAAATCTCAATTCCATCTCAGATCTTTTGATATAGAATTTTATAGTTTAGATTTTTTAAAGGAAAAAATTCATCAGTATAGAATTAATACATACATATTAGCTCCATATTTATTTTTAGTCCATATGTTTCGAAAACCACTAGTGTTTTTTCGCAAGAATTGGTTTGCGAAAGATTCCAAGCAATTTATGAAGGCTTAGGTGATATAAACCCTTGATATAATAGGATTCTTACCATTGGAAATTTGCG # Right flank : AATAAATGCTATGAGATATAGATATAACTGATTAGAGTTAATTATCTGTTTGATACAGATGATTAGCTCTGTTTTTTTATCTAAATCAAACTTTCTCATTTTCATTCCCACCCTGTTGGGAATCTACTGTGTTATACTAGATTCAGATTCTTAAGGGAGGTGCTAAATTGGATAAAGAAGCTTTAGTAGTTGATGATTATGGAGTGTTTATTGGCAAGAAGGGTGAAAGGGTTGTTTTAAAGAAAAATAAGAAGATATTTAAGGAAGTACCCTTTTTTAAAGTAAAAGGGATATTGGTTAGTAGTTCAGGCGTATCTTTATCATCAGATGTGATAAAAGAATGTGCTAAAACAGGAATACAGATCCATTTACTTACGTATACAGGTAAACATTTAGCTCAAATTTCTTCATCTGCTATGACAGGAACTGTTAAGACACGTCGAGAACAATTACTTGCTTATAGTGACAAGCGCGGAATAGAACTTGCTATTGCTTTTGCT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTACAAACTATACTCCATTAACTAGGAGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.10,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //