Array 1 121327-122734 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTRN01000002.1 Pseudomonas aeruginosa strain AZPAE14928 AZPAE14928_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 121327 28 100.0 32 ............................ TGGCTGACGAAGCCCCAGGCCGCCTTCCCGCC 121387 28 100.0 32 ............................ TTCTGGATACAGGTCGGACCGAACACGTTGTG 121447 28 100.0 32 ............................ TTATCGGTCGGCAGCTTACGCAGGTCGCAGGA 121507 28 100.0 32 ............................ ACGTATCCCGACCTGTTCGCCAAGCTCGATGT 121567 28 100.0 32 ............................ AATCGGGGCTTTCTTGATATCCGTCCAAGCCT 121627 28 100.0 32 ............................ TTGTTGTACAGCACCTGGTCCATCAGCGCGCT 121687 28 100.0 32 ............................ ACCGCCACGCCGCAGCAGATCATCGACTTCTT 121747 28 100.0 32 ............................ TTGAGTTTCTCTACGAAGTCGGGGGATTCATC 121807 28 100.0 32 ............................ CGCAATCGACCCGCCCCGATCGCAAGTTTGCC 121867 28 100.0 32 ............................ AGAAACATCGCGCACGTCTTCGCCAGATCGGT 121927 28 100.0 32 ............................ ACATAGGCCAGCTCTGGCGATTCATCGCCAAA 121987 28 100.0 32 ............................ ATTGATCACGGCGAACGTGCCGGGCAGGAGTG 122047 28 100.0 32 ............................ TCGTCCATTCGCGTGCGGGCCAGTCCCCGGAA 122107 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 122167 28 100.0 32 ............................ TGGTGCGCAAAGGCTGGAGTCCTGCGCATGAC 122227 28 100.0 32 ............................ TGCAGGCGCTGCGCGCGCAACTGGAGAATGGC 122287 28 100.0 32 ............................ GATGGCGTTGCCCGTGCCGCCTCGGGCCAGGG 122347 28 100.0 32 ............................ TCGATTCCTTTATCGCAGCGCGGCATGCGGAA 122407 28 100.0 32 ............................ GGCAAGGGCTACATGAACGTCACCACGGCAAT 122467 28 100.0 32 ............................ TGGACGACCTGGGTGTCGTTGGTTGACGAGTG 122527 28 100.0 32 ............................ TGGGCCGGCGCCTACGCGGCGCATCAGCCGGT 122587 28 100.0 32 ............................ TCGGACAAAGACAGCCTCCGGTCATAGAGTAG 122647 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 122707 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.9 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCCGGACAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 42996-43383 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTRN01000023.1 Pseudomonas aeruginosa strain AZPAE14928 AZPAE14928_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 42996 28 100.0 32 ............................ TGCAACTGGTTGCCCAGCAGTTCGAACGAGGC 43056 28 100.0 32 ............................ AACTTCCGGCCAGGCCGAGGGCGACACTTACA 43116 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 43176 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 43236 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 43296 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 43356 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 52286-51898 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTRN01000023.1 Pseudomonas aeruginosa strain AZPAE14928 AZPAE14928_contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 52285 28 64.3 32 NNNNNNNNNN.................. TCGATCCACACCCGCGAGGACGTGGCCACCGT 52225 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 52165 28 96.4 32 ....................T....... TTGCGGATCCGGCGGTAGACGACCATCCGCAC 52105 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 52045 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 51985 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 51925 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 90.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGCCCCCACCCTGGACGAGCAGGTTCACTGCCGTATAGGCAGCTAAGAAATCGCGGAACAGCGGTTCGGCTTCCAGCGGCGTGTTCACTGCCGTATAGGCAGCTAAGAAAACCGGCGCCGACTGGCCTTCGATCCAGATAACGTTCACTGCCGTATAGGCAGCTAAGAAATTCCAGGGCCTTCAGGTCCGGGTAGTCCTTGGGTTCACTGCCGTATAGGCAGCTAAGAAATCAATCGGCAGATCGCCAACATGCGGTCGAGCGTTCACTGCCGTATAGGCAGCTAAGAAATCTACGAGCAGACCGAGTTGAAAGGACAGGAGGTTCACTGCCGTATAGGCAGCTAAGAAACTGCCCCGCTCTACACCCAGCCTGGGGCTTCCTGTTCACTGCCGTATAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCATGAAGGTCGTCCGCCG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 53185-52436 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTRN01000023.1 Pseudomonas aeruginosa strain AZPAE14928 AZPAE14928_contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 53184 28 100.0 32 ............................ AAACGGGTTGTTCTTCACGAACGCGCAACTAT 53124 28 100.0 32 ............................ CTAGGGCAATCTGTATATTCAGCGGTTTCCTA 53064 28 100.0 32 ............................ TAGCAGTGTCGAAGGCATCGGCCCGGCTGCTG 53004 28 100.0 32 ............................ GACCGGCGCGCTGTCGAGCCCATCGCCGGCGA 52944 28 100.0 32 ............................ TTGGCGAAGAACAGGCAGTCCACAGGATCGAT 52884 28 100.0 33 ............................ CAGCGCATGCCCGCAGCCCCGCGGGCGTTTTAT 52823 28 100.0 32 ............................ GCGAATGGAACGCCCCCACCCTGGACGAGCAG 52763 28 100.0 32 ............................ TCGCGGAACAGCGGTTCGGCTTCCAGCGGCGT 52703 28 100.0 32 ............................ ACCGGCGCCGACTGGCCTTCGATCCAGATAAC 52643 28 100.0 32 ............................ TTCCAGGGCCTTCAGGTCCGGGTAGTCCTTGG 52583 28 100.0 32 ............................ TCAATCGGCAGATCGCCAACATGCGGTCGAGC 52523 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 52463 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAACGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CTGCCCCGCTCTACACCCAGCCTGGGGCTTCCTGTTCACTGCCGTATAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATAGGCAGCTAAGAAATCGATCCACACCCGCGAGGACGTGGCCACCGTGTTCACTGCCGTATAGGCAGCTAAGAAAAGCAATGGAAAGCAGCGATGTGACCCGACCCGGTTCACTGCCGTATAGGCAGTTAAGAAATTGCGGATCCGGCGGTAGACGACCATCCGCACGTTCACTGCCGTATAGGCAGCTAAGAAATGCAGGTCATAGGCGTATTCGAAGGACAGGCTGTTCACTGCCGTATAGGCAGCTAAGAAAAGCAGTTCGAATTCGTCATCCAGTTCTAAGGTGTTCACTGCCGTATAGGCAGCTAAAAAATGTCCCGAAGTTCATAAGCGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //