Array 1 119672-120737 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZTS01000019.1 Salmonella enterica subsp. enterica serovar Indiana strain 50269 50269_c19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 119672 29 100.0 32 ............................. TGTAACCACTGCGATATGGGCGATGACACAAA 119733 29 100.0 32 ............................. CGGGAAGCGCAGCAGAACGCCCGGTCGCAGCG 119794 29 100.0 32 ............................. ATCACCGGCACGCGCGATAACGGGTCTGATTA 119855 29 100.0 32 ............................. CCGAAAATTACCGGGCAGTCACCGTGGGGGCA 119916 29 100.0 32 ............................. ACGATCCAGATATTTGGCTGGATGCAATCGGT 119977 29 100.0 32 ............................. CCCCATCGGTAACCTCTCACTATCGGTGTGTC 120038 29 100.0 32 ............................. GCTTTTATGTCTGGTGGATATAACGCACTGAA 120099 29 100.0 33 ............................. CAAAAACAGGTAAATTTGTTCGCTTCGTCAAGC 120161 29 100.0 32 ............................. CGTATCCCGAAATCACGTTCAAGAAAAATCCG 120222 29 100.0 32 ............................. CCGTTGATCAGAACGGCAACGAACGCACGTAC 120283 29 100.0 32 ............................. TCAGCGTAGGTTGTTGACGTCCCCACCAGCCC 120344 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 120405 29 96.6 32 .............T............... CACTGGAGATATAGCTGCTGTCGTCATCGGGT 120466 29 93.1 32 .............T..............A GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 120527 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 120588 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 120649 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 120710 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 137279-138652 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZTS01000019.1 Salmonella enterica subsp. enterica serovar Indiana strain 50269 50269_c19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 137279 29 100.0 32 ............................. AGCACACATTGTGTGACGGTCGCCGTCTGGTT 137340 29 100.0 32 ............................. CCGGTTGTCCTTGTAATGGGGGGGGGCATTTG 137401 29 100.0 32 ............................. GGCGACGGGTTCGTCCGACCGCATCCGGGCCA 137462 29 100.0 32 ............................. CTTGGAACCATAAAAGATGGGCAAATAGTGCA 137523 29 100.0 32 ............................. ATTTTATTAGCGACTATCCAGGAATAAATTAC 137584 29 100.0 32 ............................. GGTGTTACTGATGGTGGGGCGCTGGATGAGGC 137645 29 100.0 32 ............................. AGCGCGTCAGGAACGTTTCTGGGGTGGCCTGA 137706 29 100.0 32 ............................. AGTGTCCACACTGCGGCGCTGAAAAATGCAAC 137767 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 137828 29 100.0 32 ............................. TTCGGAGTCCGGATCATCATTCAGGATAACGA 137889 29 100.0 32 ............................. AAATCGCGCGGCGATCGACTCAAGGCGGCGAC 137950 29 100.0 32 ............................. AAAATCGTGAGTGACTATCGTTCTGTTATTGC 138011 29 100.0 32 ............................. TCTCTGTGATTACCCCGGAGCATGGCGGTGCG 138072 29 100.0 32 ............................. TGGCCGGGGAAACAAGGAAAGTCCTGGTTTTT 138133 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 138194 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 138255 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 138317 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 138379 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 138440 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 138501 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 138562 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 138623 29 100.0 0 ............................. | A [138650] ========== ====== ====== ====== ============================= ================================= ================== 23 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //