Array 1 43-724 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMOM01000070.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN00324 CFSAN00324_65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 104 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 226 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [268] 268 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 329 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 390 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 451 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 512 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 573 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 634 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 695 29 96.6 0 A............................ | A [721] ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.6 30 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGATAAACCGTGGATTATCTGTATTTTACGGAAGTGGGCGCGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17451-16324 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMOM01000055.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN00324 CFSAN00324_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17450 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 17389 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 17328 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 17267 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 17206 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 17145 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 17084 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 17023 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 16962 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 16901 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 16840 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 16779 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 16718 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 16657 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 16596 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA C [16587] 16534 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 16473 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 16412 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 16351 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4-460 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMOM01000007.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN00324 CFSAN00324_80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT C [9] 66 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 127 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 188 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 249 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 310 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 371 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 432 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGAG # Right flank : TTACGTGTTTATTCATCTGTTGCATTAGATTCGTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //