Array 1 76694-77026 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWP01000004.1 Salmonella enterica subsp. enterica serovar Poona strain BCW_2873 NODE_4_length_199299_cov_2.18161, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 76694 29 100.0 32 ............................. CGATTTGTATTGATTAATTTTGTCAAGATTGT 76755 29 100.0 32 ............................. AAATCGACTACGGCGGGCGCAAACAATACACG 76816 29 100.0 32 ............................. GCGCAGGCCGGTATTGATTGCGAATTGCCACA 76877 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 76938 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 76999 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 93149-95132 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWP01000004.1 Salmonella enterica subsp. enterica serovar Poona strain BCW_2873 NODE_4_length_199299_cov_2.18161, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 93149 29 100.0 32 ............................. GTTTCCAAACTTTTATATTTCTGTGGACAATA 93210 29 100.0 32 ............................. TTAACGTAACAGTGTATTTTTTGTCCCCGTTG 93271 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 93332 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 93393 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 93454 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 93515 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 93576 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 93637 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 93698 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 93759 29 100.0 32 ............................. CAGACAGTAAAAGTGAGGCAGCAGGGCGGAGC 93820 29 100.0 32 ............................. GCATCAAGCCCCCCATCCGCCCGGGTTGAGAG 93881 29 100.0 32 ............................. AATTCCTCGATAACGATCTGCACCAGGTTGAA 93942 29 100.0 32 ............................. CCGTATCGGGTGTTTAATTTTTACGTGAGAGA 94003 29 100.0 33 ............................. GTCAGAAATATTAGTTACCTCGGCGGCGTTAGC 94065 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 94126 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 94187 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 94248 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 94309 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 94370 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 94431 29 100.0 32 ............................. GCAAAAGGATCGAACAAAAAACCTGTGGTCAT 94492 29 100.0 32 ............................. TCTGTACACGACGTAACGACCACATCATTCAG 94553 29 100.0 32 ............................. GCGACGAGCGCAACGCAGGTTACTGGCGTTGA 94614 29 96.6 32 ............................T GCGGAGCAGGCTAGCGAACCACTCCAGGGCGA 94675 29 100.0 32 ............................. TTTTCGCTCGCGCTCGTCCATCATTCCGCGCC 94736 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTTGTCTGCGC 94797 29 100.0 33 ............................. ACCGTTAAATCCTGGTCTACTACCCCGCCCACC 94859 29 100.0 32 ............................. GGAGCGGGACGACAGCGAACCATCCGGAAAAA 94920 29 96.6 32 ..........A.................. CCAGACGACCTTCGGTGTCTTTAATCAGTTTC 94981 29 100.0 32 ............................. CGATAACGGGCGGGCGTTTATACGTGCCCGCG 95042 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACATCTCTAAAAA 95103 29 96.6 0 ............T................ | A [95130] ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAAGACGTTTTTTCCGCTTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGAATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGGTTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //