Array 1 215843-217896 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVRY01000039.1 Moraxella catarrhalis strain 157.rep2_MCAT 236_284894_16686945_47_,...,142_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 215843 28 100.0 32 ............................ GTGCAGCTTGGGGCAGTGAATCAGCAGAGGCA 215903 28 100.0 32 ............................ AAAGCCATCTTGACCAATCACTGCGTACGCCC 215963 28 100.0 33 ............................ ATGTAAAACCCAAAAACATAAACTCATTTCTAA 216024 28 100.0 32 ............................ TGTGGGCGATTATTAGCAAAAATTGGAAACTT 216084 28 100.0 32 ............................ AAAGCCTATAAGCCCAACGCCACCGTCATTTA 216144 28 100.0 32 ............................ TTTTGCCTGATGCGTGTTTTTTGCAATAAGCC 216204 28 100.0 33 ............................ GCGGTCGTGAAGGCCTGGACAGACTGGGTATCT 216265 28 96.4 32 ...............A............ TGCCACTGTGTACACAGCGTGGCAAGGGTATC 216325 28 100.0 32 ............................ ACCCCAAAATACATCTACACCGATGATAACAA 216385 28 100.0 32 ............................ ACGCTGTAAAGCGTTTAATGTTTTGAGCGTCA 216445 28 100.0 32 ............................ TAACAAATCATCAAGACCACCACCGTCTCCGC 216505 28 100.0 32 ............................ AAGAACTAAACGCCCAAGCATTTGACGAAAAA 216565 28 100.0 32 ............................ TATCGCAATTTTGTTAAAAATGTGATACCCTT 216625 28 100.0 33 ............................ AACATTCCATTCAAATTCAGCAGTGTAGACATT 216686 28 100.0 32 ............................ ACAGGCACTATGGGATTGACATTTGGTTTATT 216746 28 100.0 32 ............................ GTGGGCAAGTCTTTGCTGATAAAATCACAGGT 216806 28 100.0 32 ............................ TAAGAAAAAGCCCCTGTGTCAAACAGGGGTTT 216866 28 100.0 32 ............................ ATCTATCCATTTCCGCAATCCCAAACTGGGGA 216926 28 100.0 32 ............................ TGAGTTTATGTTTTTGGGTTTTACATCTCAAA 216986 28 100.0 32 ............................ TACAAAATGACAGCTATCCCATCCGCTCATAC 217046 28 100.0 32 ............................ GCCGTGCCCCCATTGATGCCTTTTTTGTCTGT 217106 28 100.0 32 ............................ ATCTTTGTTTTTTGTGATGTTGCAAATCTCTG 217166 28 100.0 32 ............................ AAACGGTGGGGTCTCATACTTCATCAATCCGT 217226 28 100.0 32 ............................ GCACTTTCAATGCTTGGTATCTTGCTGTTAAC 217286 28 100.0 32 ............................ GTGGGCAAGTCTTTGCTGATAAAATCACAGGT 217346 28 100.0 32 ............................ CAAGTGAGTTTGATAGAAGCTTTAAATCTTCT 217406 28 100.0 32 ............................ TGAGTTTATGTTTTTGGGTTTTACATCTCAAA 217466 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTGTCCAGGC 217526 28 100.0 32 ............................ TCATCGGTGTCGGTTACCGATTTAATTTGTAG 217586 28 100.0 15 ............................ ATCGGATTAAAAGCT Deletion [217629] 217629 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATT 217689 28 100.0 32 ............................ ACATCATCGCCGACATTTTGCACGATGACAAG 217749 28 100.0 32 ............................ ATTACAAGGTTTTAAATAATCATTTAACGCTG 217809 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 217869 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.7 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAATATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //