Array 1 15439-16194 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJRG01000013.1 Staphylococcus pseudintermedius strain MAD640 13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15439 36 97.2 30 ............................G....... GCAGAAAAACCCTTTGTCAGTTATGGGAGC 15505 36 97.2 29 ............................G....... GACAATTGCATCATCGTTGTCATCTGAAG 15570 36 97.2 29 ............................G....... CATTACCTTTGTTTGCGTTGTTTGATTCT 15635 36 100.0 30 .................................... ACATCTGAACCTACCGCGCTATCGCTTACT 15701 36 97.2 29 ............................G....... GACAATTGCATCATCGTTGTCATCTGAAG 15766 36 100.0 29 .................................... GTTAACTGAACTCGAGTGTTGGCGCTTGA 15831 36 100.0 30 .................................... ACAGGCTTAAAGAATCATTACAGTTTGCTA 15897 36 100.0 29 .................................... AGTAATGATTTAGAAAAGCGTGAGCATAA 15962 36 100.0 29 .................................... AGTTTTTTGGCGAGAACTAATGGGATTTC 16027 36 100.0 29 .................................... AGTTTTTTGGCGAGAACTAATGGGATTTC 16092 36 100.0 30 .................................... GTTATGATGTTTGGCGATATGGGTCGTCGT 16158 36 86.1 0 ..........................AC.TC.T... | C [16191] ========== ====== ====== ====== ==================================== ============================== ================== 12 36 97.9 29 GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTACTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGTGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAAATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Alternate repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //