Array 1 235452-235619 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAJ01000010.1 Porphyromonas gulae strain COT-052 OH2179 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 235452 36 100.0 30 .................................... CTGATGCAGCTGCGTATATGTGTGCTTCTT 235518 36 100.0 30 .................................... GAAGGGGCATAAAACAAAAAAATTATGAAA 235584 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTGTGTGTACCCTTCAAATAGAGGGTAGATCCAAC # Left flank : TTTGTATATATATCGTTTTCATTTTGTATATAAATCGTTTTTGATTTATATATAGATTGCAAGCCCGATTGATATAAATCGGATATTTCAAAAAGCCTTTAGTGGAGGTATAAATAAAGAGGCACCCACCGAGTTCTTGCAGGAACTTGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAGGCTCTACCGCTCATACAGCAGGTTTGCATCAGCCATACGCAATGCCGGTATATAACCACACAGGCCGAACGAAACCGGCCGGATAAGAATGCAGGAAAGAGAGGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAAAAAGGGAAAGCACTCCCGGCACAAATTCACCGAAGAGGGGAGCACCTCGTCCGCCTGCAAATGTAGCGAAAAAGCCCCAACACGGAAGAATCCCCACGCGCTACTCTCTCCCTCAACATTCCAACGTCCAAGCCACCAATCAAGAATCAT # Right flank : CCTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGTGAAAAACAGTCTGTCATCATCATTTTAGTAGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTACGTTCCTGCCGGTTCGCACTCAAAAGTTCAAAGTTCGCCCCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATACGGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTTCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAACACCGTTGCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAAGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCAAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 12715-11216 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAJ01000022.1 Porphyromonas gulae strain COT-052 OH2179 contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 12714 32 100.0 33 ................................ TGTACTATTGCAATAGCATAACCATTGAGCAAG 12649 32 100.0 34 ................................ ATTTGTGAGTAAGTATTTCGTTCAACAACAAAGT 12583 32 100.0 34 ................................ AGAAAATAATTATTAATAAAAAAGTTGCATTATG 12517 32 100.0 34 ................................ TATAATATCTTCAAAGATAGTAGTTATCAAGTAA 12451 32 100.0 37 ................................ AACACCGCAAAATCGTAATGGTGAATAAACTCATGAA 12382 32 100.0 33 ................................ TTTGAATTTATCCTCGCTATCTATTTTACCTCT 12317 32 100.0 35 ................................ TACTATTTCAAATGCTTTATTCAAGCTATTTGTTA 12250 32 100.0 36 ................................ ATTGATATATTATCTATCTCTTGTCGTTCATCGTTT 12182 32 100.0 35 ................................ GCTGAAGCTATGATTAAAGCTGTTGATGGATACAG 12115 32 100.0 35 ................................ AAAGGTATGATCGACTATCAAATAACAAACTACTT 12048 32 100.0 35 ................................ TTGAGATTACTTGGACACTTGAGCAAATACAGAAG 11981 32 100.0 33 ................................ TGGAATAATGTGTTTATTACAGTAGCACAACCA 11916 32 100.0 36 ................................ AAATGATGAGAGACAAGAAACAGAGAGTATGTCTAT 11848 32 100.0 35 ................................ AAGTTTCCAGGTTGCTGGATAAACATCAGCTTCAA 11781 32 100.0 35 ................................ CATGGTACAATACAGGAGCTGCCGGACGCCATCAA 11714 32 100.0 34 ................................ TAAACTATGATGAAAACCCATGTGTTTAGCAAGA 11648 32 100.0 36 ................................ TTGGAATTAACTTGGACTCTTAAACAAGTACAGAAA 11580 32 100.0 36 ................................ TTGTTCCTCGCTGCCAAATACAAAGGCATGGACGTA 11512 32 100.0 33 ................................ ATGTGAAAAGATTTTCCTGATCCAGATGGTCCC 11447 32 100.0 35 ................................ CTTAACAGGCGTGTCAATGTTACACGGTATGATGG 11380 32 100.0 34 ................................ CTGAAGGCGAACAAGATGCTTGATCCGCAGAAGC 11314 32 100.0 35 ................................ GGCGTATGTCAAGCAGGCGCAGAAATAAAAAACAA 11247 32 84.4 0 ...........................TGCTT | ========== ====== ====== ====== ================================ ===================================== ================== 23 32 99.3 35 GTCGCACCCTTCCCGGGTGCGTGAATTGAAAC # Left flank : AATTAGATGATTATCCCGTTTTTCTTATTCAGTAAATGTCATGTATATACTTATTACTTACGATGTTCAGACATCTGGTCCTGAGGGAGCTAAACGTCTCAGAAAAGTAGCAAGAACTTGCAAAAATTATGGACAACGTGTACAGAATTCCGTTTTTGAATGCCTTGTAACACCTGCTCAACTTGTTCATTTGGAACATGAGCTTACATCTCATATAGATATTTCAGCAGATAGTTTACGCATTTATCATTTAGGATCTAATTATCAACGCAATATCAAAACCATAGGAAAAGAAACCTCTTTCGATATAGAAGGAGAACTGCTCATATAAGGTCTGCGAATCCAATGCTATCAGTAATTTCCCGCTTTTTCGGCGATAACTGATAATCAATAACCTAAATCTAAATCTTCAAACTCAGCATTCTCTTTTTTATGCTAATTTAGCCATTCGCAGAAAATGCGCTATCGACCGACTATCCATATGGTCTATAGTATCCGCA # Right flank : GTTCTACAAACACGCTACTATCCTTAGTAATGCTATTTTACGACCAAACAACCAACAAAAAGAGAGACTGTACCGAAAACACTTCGGCACAGCCTCTCTTATAAAGTGGATCATACGCTCTTGGGCGTATGATCCATGGGAGTTTTTAGTTTTCTGAAAGCTTTTCTTTCAAAGCGGCCAGTTCACCGAGGTCACCGAGTGTAGCTTTCTCTACAGCCTGTGCAGGATTGGCAGCTTCGGCAGCAGCTTCTTTCTGAGCCGCTTTGGCTTCGGCCTTACGCTCTGCGTTGGCTTCGCGCTGAGCCGCTTTCTGCTCATCTTCGAATACACGGCTATGAGATACAATGATTCGCTTGGCATCCTTATTGAACTCAATAACCTTGAAAGGCAACTTCTCTTCGAGTACAGCCTGTGAACCATCTTCCTTCACCATATGCTTCGGAGTAGCAAAACCTTCCACACCGTAAGGCAGAGAAACGACAGCACCCTTGTCCATCACC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCCCGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 145443-139533 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAJ01000002.1 Porphyromonas gulae strain COT-052 OH2179 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 145442 29 96.7 36 ............-................. TGTAAGGTGATGGCTATAGCTCGTGGTCGCAAACAT A [145427] 145376 30 100.0 36 .............................. CTTCGGGCATTGTCGTGATCTCCTCCTTCCTATTCT 145310 30 100.0 36 .............................. TGAATCGCGCCCTCAGCTTCAGAACAAGTACCCGTC 145244 30 100.0 36 .............................. ACTCGAACGAACCGAATCGGGTGCTGCAAAAAAGTA 145178 30 100.0 36 .............................. AAGGCAGGGCATTACTCCGCCGCCCAACGTCCGTAC 145112 30 100.0 37 .............................. GACCATCGATGACGAGAAGTGCTGCGAACCATTTAAC 145045 30 100.0 36 .............................. TTCAGTTGCAAAGCAAACTGCACGACATGGTACGAG 144979 30 100.0 36 .............................. AGTTATTTGAACTATAATGATGCTTACCATGTAAGC 144913 30 100.0 37 .............................. AAGAAAGTTAAAGTAGTATTTTTTGTGGTATTTTATT 144846 30 100.0 35 .............................. TGTGATAGCGAAATGATGTGCACCCAGGACTATAA 144781 30 100.0 37 .............................. TTATCAATACAACTATTAAACAATACCAAATGCTGAA 144714 30 100.0 36 .............................. CTTTTCTTGGATGATATAACCACTTTCATATAGATA 144648 30 100.0 36 .............................. AACACTATAAATGAAGTTATTGGACACGATTCAGAT 144582 30 100.0 37 .............................. CCGATTACTTTGATAACACTATGAAGGAGGTGGTTAT 144515 30 100.0 36 .............................. GGTTATCGGTAGAGGACAGGCATGCGCTAAAAAGCT 144449 30 100.0 37 .............................. ACTCCTCGATTCGCCGTTCGGGGATATGCTCACCGTT 144382 30 100.0 36 .............................. TGTTGAGATAGATGGACAAGGCAGGCTGAACATAAT 144316 30 100.0 35 .............................. TAGCGCCCCTGATGAGAATCGGGGTTGGGACGGAG 144251 30 100.0 36 .............................. CGGGCGGACATATACCGCAAGTATTTAGGCGACGAA 144185 30 100.0 35 .............................. GCCCCGTGTCTTACCACGATATAGCAGGTAGCGAT 144120 30 100.0 37 .............................. TTTTATAACCGCCGCTAACTTTTAAGCGAAAGCTGTC 144053 30 100.0 36 .............................. TATATGCTCATCATAAAAGATGAGAATGAAACGCTA 143987 30 100.0 36 .............................. TCCTGTCCGCATTCGCAGCGAAGATGCTGCCCGTCG 143921 30 100.0 35 .............................. ACGTGCTCGACCTCCCACGCTCTGAAGATGAGCGT 143856 30 100.0 37 .............................. CAGCCGAATTGCGAATAAGGACTATCTCTCTTCTCTT 143789 30 100.0 36 .............................. TTCACAAAAGAAGAGATAATAGGACACGACTCTGAT 143723 30 100.0 39 .............................. CTGTCAAAGGAAAGCCGTTGGGATTTTCTGAACAGACAA 143654 30 100.0 36 .............................. AAGGGCGAAGGATACAACCACTCCACGCGCCCACAT 143588 30 100.0 37 .............................. TTCCCACCGCGTCCGGAAAGGTAATTGGCAAGGAGTA 143521 30 100.0 36 .............................. AAGAAAACGTAAGATTTGCTTGTCCGTCCAAGTCTA 143455 30 100.0 37 .............................. AAGTACGCCAAACGCATACTTCGTGCGGCAAGACAAT 143388 30 100.0 34 .............................. TTCCTCCTTTCCAAATTTTATAAAGGAGGATCAA 143324 30 100.0 36 .............................. GAAGACGAAGACGGAAATATCTTGTATCTGTACACA 143258 30 100.0 35 .............................. GATAGAGCCTCCAAGTCCAAGGAGAGAAAGAATAT 143193 30 100.0 38 .............................. TAACAAAAGTATTAAAATCTCATGAAGATAATAATAGA 143125 30 100.0 36 .............................. ATTTCAGCAAGGCGAAAGGTGGATTGCCGAGAGATG 143059 30 100.0 35 .............................. TCTTCGTATCCTGCAAGATGTTGCCCCTTCTCATC 142994 30 100.0 36 .............................. TCGGAGACACGACCAATTACAAGACAGAGAAGCTGC 142928 30 100.0 36 .............................. ACTTTAACGTGTTCATTCGAAAGCAGTTATGAGTGA 142862 30 100.0 36 .............................. ATACAGCGACATAGAAGATGATAAACAATTATTGGT 142796 30 100.0 36 .............................. AAACAGAGGCGAACACCTCGAATTTAACCACATAAC 142730 30 100.0 37 .............................. ATCACGACGGGTTAGGTGGTAGTGCTATCGAAATCAT 142663 30 100.0 36 .............................. TATTTTCTAACAACCTTTCAAATAAATAATATACCT 142597 30 100.0 36 .............................. TATAAAGAAGATACAAAAGCTCAATGAATCTATAAA 142531 30 100.0 36 .............................. GAAAAAAGTAAAAATCACACTAGATGCCGAAACAAA 142465 30 100.0 37 .............................. CCTCAATTTTCGCCGGAAAGCCTTTTTTGACAGTCCG 142398 30 100.0 35 .............................. AAGGTAGAAAAAGGCCACCTCCGCGGGTGCTCGCC 142333 30 100.0 35 .............................. GATCGTGGTAAACCAAATGGCGGATGCGCTGGTAC 142268 30 100.0 36 .............................. GATGGCTGTACGATGAGACGGGTGTAAACGTGCTGC 142202 30 100.0 36 .............................. TTTTTTTTCATCCCGCGTCGTTTTGCCGATTATATG 142136 30 100.0 34 .............................. GACTCTAAAGATTCTGCATTTTATTCCTTATCCA 142072 30 100.0 36 .............................. TGATTATTTCGACAACACATTTACAAAAGAAATAAT 142006 30 100.0 37 .............................. TAAGAAGTAAAGATAAAGTACCTTTCCTTATGCAAGT 141939 30 100.0 35 .............................. TGTTATTTTGAGAATAATACTATAAAAGAGATAAT 141874 30 100.0 34 .............................. CGTCACCTAAAGCTTTGTTGAAATTTGCAATCTC 141810 30 100.0 35 .............................. TATATTTTAACCAGACGGTCATGGGATACTGCCTC 141745 30 100.0 36 .............................. AAATTTTCGCGAAGAATCGCGATATAATAGTATTCT 141679 30 100.0 35 .............................. AAATGATGAAGTACAAGTACTTCTCTTTTCCTCTA 141614 30 100.0 36 .............................. TCAGGTCAAACAAACATTCAGCATACTCCTGATTAT 141548 30 100.0 37 .............................. TATTCGTAAATAACACAGATTATCGCTTCTATTTACA 141481 30 100.0 36 .............................. GAGAATCTATTTGAGTATAAACAGCAACTACTTAGT 141415 30 100.0 37 .............................. AAGCGATTAATTATAACATTTATCTTGCTAAACACAT 141348 30 100.0 35 .............................. AGAAAGATGGAAAGAAAATCCATAGAACAAAAAAT 141283 30 100.0 37 .............................. TATTTCAGAAAAATAATAAATAAAAAGAATCGAATTA 141216 30 100.0 36 .............................. AAATAACGTCATCCGGCACGTCGCATTCGGCCGCTA 141150 30 100.0 37 .............................. TCACCCTTCTGCGTGAGGGCAGCCGGCTATCCGACCC 141083 30 100.0 36 .............................. TGCCGCTTACGAACCATCGAAGCACCAGTACAACGA 141017 30 100.0 36 .............................. TGTTGTACGACCGCTACGACCGACAGCTTTTCACGT 140951 30 100.0 36 .............................. TATCTCCACCCAAAGGGTGTAGATTTTCCCGTCATC 140885 30 100.0 34 .............................. TTGTGGAGCAATACTTAGTTCGCGCCGACACCTT 140821 30 100.0 36 .............................. GGCTAACTCATTCGAACAAAACAATCTGATTGCTAC 140755 30 100.0 36 .............................. TATTTACCTGATCGATAAGTCCCTTTCTCTCTTTTG 140689 30 100.0 37 .............................. CGTACATATCAACGCCCGCGACTTCACCCTCCGCACG 140622 30 100.0 35 .............................. AGGAAATGGGATTGGGGCCTGCTTGTGCCAATCCT 140557 30 100.0 36 .............................. CACACGGTGATAGTATTTGTGCCTTGTGTCCCGTCC 140491 30 100.0 35 .............................. ACTTCGCCCTCGTAAAGTTTCAACACTGCAAAGGT 140426 30 100.0 35 .............................. CCTGCAAGCTTGTTGCAGAGCTTACAATCGAACTG 140361 30 100.0 38 .............................. TGGGACGCTCGACAGACTTTCCTCGGAGTGGGTCGAAA 140293 30 100.0 36 .............................. TGCCCTCCAGCTTCTCAGCTGCAGCTGAAATTCTGC 140227 30 100.0 36 .............................. TTAAACCGTTTCAAGCAGGGAGAAGTCGGGAAATCA 140161 30 100.0 37 .............................. GTGGATAAAGAGGTTTCGGAGGGAAACAAAACATTCG 140094 30 100.0 36 .............................. CATCATACTTTTTAGCATTTCAAGCTCTTTGATAGA 140028 30 100.0 36 .............................. CACATATATATAATATCAAAAGTTCGCAGCAACTCT 139962 30 100.0 37 .............................. AGCGGAACAGCCGGTAAGCCTTTAAGCAAGGATATTC 139895 30 100.0 38 .............................. CTGTTAGCAGATGAACATGACTTCTATAATGTGGTCAA 139827 30 100.0 36 .............................. CATGACCAAGGTGCAGAGCGTGATGGCAATCGCTAT 139761 30 100.0 36 .............................. CCCTCAAACAGGGCTTCGAGGACTTCAAGAAAGCTA 139695 30 100.0 37 .............................. TTTTTCTCCAGCAGGGCCTTTACCTCTTTCAAAGTAT 139628 30 100.0 36 .............................. AAATCATCGTCGACTTCCTCGCTATCGAGGATTTGT 139562 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 90 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TACGTCTGTCGTATCCAGAATTTCCTCCCAGGGCTTTCCTTCCCAGTCGCCGAAGTTCATCTCCTTCAGCCGATCGTCTCGGATGGCATCGGGATAGCCGCAAAAGGCCGCCAGCTTGGCAGCACGCTGCAAGGGACTGGTAAAGACAGCCTCCGGATCGAGGCCTCTGAGACGGGCACACGCCGCCGTAGCCTCCTCTTCGAAGGTATCGCGAACGTCCACATCGGTGAATCCGTAGCAGTGCTCATTGCCATTGAGCAGCACCGAAGTGTGGCGCATCAGATATATTTTCATCAGTGGATTATTAGGGTATCGGTCGGAAAAAAGCCTTCCGAGTCCGACAAAGATAGTAGAAAGAGAGTGCATCTGAAAACAGACCAATCGCGTGCTATCGATCAACTGAGAGGATGGAAGTGCTTTTGTATTCCGGTTCGGAAAATTGCCCGATCTGCATCCGTAAAAACGTGGAGCGAGAATTTTTTCGTTTTGGTGGAGGACTT # Right flank : CCGTCACAAATATAGGTTTTTCGGTTTGAATGTGAGAGGGTTACGAGAAAGCGAAACCCAATATTCAGACATTATAGTTGTCGATGTCCGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCAAGGGTTAATCATGACAAAAGGCTGGACGAATTTGTTCAAATCGACGCTTCAAAAGATAGATGAAGGGAACTGTATCGTGCTGTATTATAGGAATATATCTGTCGCAGCTCGCTCTTTGCCGATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCCTCTTTTTCCATGATTCTGGCAGCTCTGCTTTTCAGTTCTAAGAGTTTGACATCGGAGATTTCTCCCTCGAACACAGAGTTCTGAATCCAATTCAGATACTTTCTGCACAGTTTTAGCATTTTGCCAACGCGCTTTTCCCCGATATCGTACACTAAAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 2 225112-224422 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRAJ01000002.1 Porphyromonas gulae strain COT-052 OH2179 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 225111 37 100.0 35 ..................................... CAAAAAAACTGGTGCGTCGCCTGCCCGTACTCAAA 225039 37 100.0 34 ..................................... AGCATTCCGTTTTTGTAATCAAATGAATCTGGAA 224968 37 100.0 38 ..................................... TTCAAGTATGGGTATACTCCTCTCCCATCGATGTATTA 224893 37 100.0 37 ..................................... GTTAAGATCCCCCAAAATGGGGGGCCTTAACCATAAT 224819 37 100.0 34 ..................................... CTTATTATTAAACTTGATCATACCGGATACAACT 224748 37 100.0 37 ..................................... CTCCACTCTCTTCCTTCTTTCCCCACACTTTCAATAG 224674 37 100.0 35 ..................................... AGATATGAAAGATCCAACAAGGAGTGTTAGGATGA 224602 37 100.0 36 ..................................... GAACTAGAAGAGACAGTTCCAAACACCACTAGTGGT 224529 37 100.0 36 ..................................... ACTTTATTGGTTTTATCATATTCGATATACCTTCTA 224456 35 94.6 0 .......................--............ | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 99.5 36 CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Left flank : TTTTTCTTCCTCTCTGTCATCATTGTTATGCCGCAGCTTGGATGAGCGGACATCCGACCCCACCCAAGAGCCGGAGGAAAAGGAAAAGTATAGTGGTTTAGTTTTTCGAAAAAACTCGAACCACGCATCGCTCTTTGACGTACTGATTATCAGCCGGTTGCAAAAACAACTCTTTTCTCCCGTTTTTCGAAAATAGGAGAAAACCGGAATTGGGACTTTTATTTTCGAAAAACAGGGGTGTTTCGCTATTTGTAAGTGTTTGATTATCAAATGGTGTCTTTCTCTATTTTCGAAAATGCCAAAAACGAAGGCTACCACTTTCTGATTTTCGAAAATAGAAAATCAGCTAATCTGATTGTATATCAATAAGATATAATCAGCTCAACAGCAAAAATGGTGTTATAGCTACATTTCTCAACTTGCATTTTCGAAAAAAATAGAATCGTTCTCTGCCAGTGCGTTACGTTTGGGATTATTCGTAACTTGCAGTCACTCAAGTT # Right flank : TCTTTATGCTCTACTCATCATCACTTGGACTTTCCATGTTAGATTTTGGAGCGGTTAATATTGTGTTTTGCACAAGATAAGAGCATAATCACAGCCTTCCGCTTGTGTACGAGCCAAGGCCGTTTGCGCACCATAATTTTCTATTTCGATGCTCCGAAAAACGTGGCGCGAGATTTTTTTCGCTGTGGTTCGAGAATTTTTTACTTCCCGTGCCACAGCGAAAAAAATCCCGCGCCGCTTTTCCCGAAAACACGCGCCACAATCGCAGCAATTACGGTTCGAGAAAATCCGATCGGAATAATTGAAATCCGAGACTTCCGAGACCTCCGAAGCCGGTTCTAAGCTCTTACCCTTCTACAGCATCTCGGATACGACCCAAAATATCCTGCTTAATGGCAGACAGATGCGCTCCCAATTCGCTCTCTGTCGGGAAAGAACCGTATGGATAGTCCTTGCCTTGGAAAGTATAGTGCATCGAAGAGAACTTCACCCCTGCATCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //