Array 1 65-4456 **** Predicted by CRISPRDetect 2.4 *** >NZ_MATM01000027.1 Mycoplasma gallisepticum strain K6216D Contig_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 65 36 100.0 30 .................................... ATCAAATTTATGCTAACATAAGTTCAACTT 131 36 100.0 30 .................................... AAAACTTAATATTACGACTTAAATCGTCTC 197 36 100.0 30 .................................... CTGATTCCGGTTGGTAAACTTAACGAACTA 263 36 100.0 30 .................................... ACAGTGTCAAACGACAAACACACCAAAGTT 329 36 100.0 30 .................................... CATCAACAACAGTATCAACACTTTCAAGTC 395 36 100.0 30 .................................... TCACATCAAAAGCGCGGCAAGTGCTATTGA 461 36 100.0 30 .................................... TCGGTTATTGAGATCTTGAAACACAAGGAA 527 36 100.0 30 .................................... ATAAAACATCGGACAAATACGACATTGATA 593 36 100.0 30 .................................... TTCAAACACATCGAGAGATCGCTATTACGC 659 36 100.0 30 .................................... TTGTCTTGACATTTTGGTTTAGTATGATAG 725 36 100.0 30 .................................... TTCAAACACATCGAGAGATCGCAATCACCC 791 36 100.0 30 .................................... TAGAATCTTTGTTAAATAGGGGTCGCGTTT 857 36 100.0 30 .................................... AAAAACCCATCAAGTTTGTAGTAGTCAGTG 923 36 100.0 30 .................................... ACCAAAAATGATGTTTATACAACCTAGTTT 989 36 100.0 30 .................................... TTTGTTTTTATCTTGATTCAAAAGACATCA 1055 36 100.0 30 .................................... TCTAATACCCCATTTGAATTTGAAAATACA 1121 36 100.0 30 .................................... AAGTTACCGTATAACGATATAACTTACGTT 1187 36 100.0 30 .................................... AAGCGGCATATCAAATTACGAACGGTGTAG 1253 36 100.0 30 .................................... CCAATTTACAAAACTCTGCGAGTGCTCAAT 1319 36 100.0 30 .................................... CAATCTCAACTTTAGATCAAAAACTGTTAA 1385 36 100.0 30 .................................... GATTAATATTTCAAAAACCAAACTAGGTCA 1451 36 100.0 30 .................................... AAATGGAAAACGAACAACAAGATAAACAAG 1517 36 100.0 30 .................................... TAGAGTTTTTCAAAAATGCTTACATGAATA 1583 36 100.0 30 .................................... ATTGATTGAAAATGTAAGGTTCGTTGTTCT 1649 36 100.0 30 .................................... GTGCGGCGAGGAATTTTAGGCCGACCACGC 1715 36 100.0 30 .................................... AATACTATGACAACTTACATTATAACACTT 1781 36 100.0 30 .................................... ACATAAACTTCGTTGTTCATGTAGGCGTTT 1847 36 100.0 30 .................................... TTGAAATTTGGATGTTTGGGAATTTACATG 1913 36 100.0 30 .................................... GGGAATTTGCACGGCGAAAATCGGCTAATG 1979 36 100.0 30 .................................... AAAAATTTGGTTTTGGGTATTCTGATAATC 2045 36 100.0 31 .................................... AATTTAATCATTCAAGGTTAGTCGTTTGGGG 2112 36 100.0 30 .................................... GTTAATACCGCACTAAATAGTACTGCTAAT 2178 36 100.0 30 .................................... AACAACTTCTTATCCAACCGCAAGCTTCTT 2244 36 100.0 30 .................................... TTAACCAACAAGACTATTTAGGTCTTTTAA 2310 36 100.0 30 .................................... AAAACTTAACTAATTTAACACAAAAAGTTG 2376 36 100.0 30 .................................... ATCTTATTGTTGTTAGCGTTTATTTGACCT 2442 36 100.0 30 .................................... GTAACAGTTTATAAGCAAATCGGGGTAGTG 2508 36 100.0 30 .................................... TCCACCACCCCACTGTCCTACACTATTACC 2574 36 100.0 30 .................................... AATGAAGAGTACAAAAGAATTGTTGATTTG 2640 36 100.0 30 .................................... ACGTAAATAACAAGAACATAGCGGTTTTTA 2706 36 100.0 30 .................................... AATTTAACCATTCAAGATTAGTCGTTTGCG 2772 36 100.0 30 .................................... ATTAATATTTTTATCAGTGATATTAGCTTC 2838 36 100.0 29 .................................... CCAAAAAGTTGAACAAAATAAAACTAGTG 2903 36 100.0 30 .................................... TCATTAAATGTCGATCAAAAAATAAGTACA 2969 36 100.0 30 .................................... AAATAAGACTTTTTTTGAACTTGAAGATTT 3035 36 100.0 30 .................................... TCAAAATCTTGTTTAATACGTTCTACGTTT 3101 36 100.0 30 .................................... TGTTTTTAGAGAACATGGTTGTGGTAGCAT 3167 36 100.0 30 .................................... ATCTCTCTAAAAAGTTGACGATCCATCACC 3233 36 100.0 30 .................................... AAAACTCGATCTAATTTTGAATGTTTTGTC 3299 36 100.0 30 .................................... GTGACTTGTCGTTAATGATGGTGTTGTAGT 3365 36 100.0 30 .................................... AAGATGGGTGGTTTGTGTAGATAAGTACGG 3431 36 100.0 30 .................................... ACTTTAAAGATAAAACAGCTTTAGAAGTCG 3497 36 100.0 30 .................................... AAAAAGAAGGTTACAGATTTAAAAAACATG 3563 36 100.0 30 .................................... TAGGCTATTGAGATTTAGAAACACAAGGAA 3629 36 100.0 30 .................................... TTAGCAAAAACGAAATAACTCAAAACGATC 3695 36 100.0 30 .................................... TTAACATTTCAAAAACAAAATTAGGCTATT 3761 36 100.0 30 .................................... TAAATAATGTAATTATATCACGTTTGTCAA 3827 36 100.0 30 .................................... TTTTGTCTTGACATTTTTGTTTAATATGAT 3893 36 100.0 30 .................................... ATTTTTTAAACCCTGTTAAATACATTAATA 3959 36 100.0 30 .................................... TATTTTTTTGCAGGTTTATATAAACTATTG 4025 36 100.0 30 .................................... TCCCATTCTATTTTAACGTTTGAAAATGAA 4091 36 100.0 30 .................................... TTTGAAGGTGTTAAATATCTTATTTTTGAA 4157 36 100.0 30 .................................... CTATGATCTTTAAAGCACAAAGTTAAAGAC 4223 36 100.0 30 .................................... TGTCTTTAGAGACAACGGATGTGGAAACAT 4289 36 100.0 30 .................................... CAATAAATCAAAAAATTCAAGAATTAAATG 4355 36 100.0 30 .................................... TCGGATTATTTCTATTACTTATTCTTAAAT 4421 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 67 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : TAGCACTGTACAATACTTGTGTAAGCAATAACGATCCAAGAAAAGATGAAATCTTAAGATACTTG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 29-922 **** Predicted by CRISPRDetect 2.4 *** >NZ_MATM01000028.1 Mycoplasma gallisepticum strain K6216D Contig_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 29 36 100.0 30 .................................... TACAAACTCCAATTTACAAAACTGTAACGT 95 36 100.0 30 .................................... TTTGAAGGTGTTAAATATCTTATTTTTGAA 161 36 100.0 30 .................................... CTATGATCTTTAAAGCACAAAGTTAAAGAC 227 36 100.0 30 .................................... TACAAACTCCAATTTACAAAACTGTAACGT 293 36 100.0 30 .................................... TTTGAAGGTGTTAAATATCTTATTTTTGAA 359 36 100.0 30 .................................... CTATGATCTTTAAAGCACAAAGTTAAAGAC 425 36 100.0 30 .................................... TCGGATTATTTCTATTACTTATTCTTAAAT 491 36 100.0 30 .................................... ATTTTAAAGATAAATCTGCGCTTGAAGTTG 557 36 100.0 30 .................................... TACAAACTCCAATTTACAAAACTGTAACGT 623 36 100.0 30 .................................... TTTGAAGGTGTTAAATATCTTATTTTTGAA 689 36 100.0 30 .................................... CTATGATCTTTAAAGCACAAAGTTAAAGAC 755 36 100.0 30 .................................... TGTCTTTAGAGACAACGGATGTGGAAACAT 821 36 100.0 30 .................................... CAATAAATCAAAAAATTCAAGAATTAAATG 887 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : TACAACTTAGTTTATGACGTTTATATAAG # Right flank : CAAAAACAAGTATTTTTTACAAACGAAAAAGTTTTATCATTAAACATATTTAATCTGAAACAAAATTTTGAAATAAATAAACTATTACTTAATCTTTTGTTTCATATTAAACAACATAATTCCAGTTGCTACTGAGACGTTTAAGGACTGTATCTTATCAGTATACATCGGGATCTTGATCTGGTAATCAGCATTCTTAATTAGTTGACTCGAAACTCCCTTTTGTTCGTTCCCAACAATTAGAATTGATTTATTAGCATAATCAACATTATAATCTTGAGCTTGATCACTTAAATTAGACACATAAGATCAAAAGCCATACTTATCTTGTAGATCCTTGATCGCATAAGATAAGTTGGCAACCTCAATTAGATTAAGATAAAAACATGCACCTAGTGATGTTTTTATCACCGTGTTGTTAATACTTGCTTGGTTGTCTTTTTTAAAGATGACCCCAAGCACATTTGCTGCCAAACAACTCCGTAAGATTCCACCAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 20379-21074 **** Predicted by CRISPRDetect 2.4 *** >NZ_MATM01000049.1 Mycoplasma gallisepticum strain K6216D Contig_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 20379 36 100.0 30 .................................... CCTCAAATTAAAAAAGATATTTTAAAAAGT 20445 36 100.0 30 .................................... AAAGCGTTTGGCGAATCAATCGAATACTTA 20511 36 100.0 30 .................................... TCAAACGAAAAAATACTTTTGGCGACAACA 20577 36 100.0 30 .................................... AACACCGTTAGTGTTTTGTGGTTTGTTAAT 20643 36 100.0 30 .................................... ACACCCTAAATATCAAACTCGAACAAGTTG 20709 36 100.0 30 .................................... TGTTTTGTGTAGCTATTGATGTCGTAAAGA 20775 36 100.0 30 .................................... AAAACAGAATGTAAATCAAATTCAACGTTA 20841 36 100.0 30 .................................... GATTAATATATCAAAAACAAAGTTAGGTTA 20907 36 100.0 30 .................................... ATGTTGAAAAACTTGAAAAACAAGAGATAA 20973 36 100.0 32 .................................... GATCCAAGAAAAGATGAAATCTTAAGATACTT 21041 34 94.4 0 ..................................-- | ========== ====== ====== ====== ==================================== ================================ ================== 11 36 99.5 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : TTGATAAAGAAGTTGTTGCTAAACTTAATGAAACGTTAGGCCGTGATATTATCTCGTTAGATACTTCTTACTCTAAAATTCTGAAATCAATAATCAAGATTTCAGAAGATTATATAGATCATGAATTTATCTATTCATATCTGGAGTTATTACATTGATCAAAAGAAATTAAAACAATTATCCTTAAAGACTTTGATAATATCGATCTAAAAAGGTTGAGTAATTTAACTCAAACTACTAATCTAATTATTATGAAAAATGATATTATCTATGATCTTGAAAAACATTTTGAGTTTTTTGAGACATACTGCTTGATTGATCATGATTATGAAAATATGATTAAGATTGATAATATGCCTTCTTTTGAATATTTATTAGAAGATATTTTCAAAGTTATGGTTGATGAAGAGTTTAAGACCACAATGTCTTTTCATCAGCTAGAAATAATTAAAAAGGAATTAAAAAAGCACATTAATTAGCTTATTTTACTTGACAATGAG # Right flank : | # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 65-1488 **** Predicted by CRISPRDetect 2.4 *** >NZ_MATM01000010.1 Mycoplasma gallisepticum strain K6216D Contig_09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 65 36 100.0 30 .................................... ATGTTGAAAAACTTGAAAAACAAGAGATAA 131 36 100.0 32 .................................... GATCCAAGAAAAGATGAAATCTTAAGATACTT 199 36 100.0 30 .................................... ATCAAATTTATGCTAACATAAGTTCAACTT 265 36 100.0 30 .................................... AAAACTTAATATTACGACTTAAATCGTCTC 331 36 100.0 30 .................................... CTGATTCCGGTTGGTAAACTTAACGAACTA 397 36 100.0 30 .................................... ACAGTGTCAAACGACAAACACACCAAAGTT 463 36 100.0 30 .................................... CATCAACAACAGTATCAACACTTTCAAGTC 529 36 100.0 30 .................................... TCACATCAAAAGCGCGGCAAGTGCTATTGA 595 36 100.0 30 .................................... TCGGTTATTGAGATCTTGAAACACAAGGAA 661 36 100.0 30 .................................... ATAAAACATCGGACAAATACGACATTGATA 727 36 100.0 30 .................................... TTCAAACACATCGAGAGATCGCTATTACGC 793 36 100.0 30 .................................... TTGTCTTGACATTTTGGTTTAGTATGATAG 859 36 100.0 30 .................................... TTCAAACACATCGAGAGATCGCAATCACCC 925 36 100.0 30 .................................... TAGAATCTTTGTTAAATAGGGGTCGCGTTT 991 36 100.0 30 .................................... AAAAACCCATCAAGTTTGTAGTAGTCAGTG 1057 36 100.0 30 .................................... ACCAAAAATGATGTTTATACAACCTAGTTT 1123 36 100.0 30 .................................... TTTGTTTTTATCTTGATTCAAAAGACATCA 1189 36 100.0 30 .................................... TCTAATACCCCATTTGAATTTGAAAATACA 1255 36 100.0 30 .................................... AAGTTACCGTATAACGATATAACTTACGTT 1321 36 100.0 30 .................................... AAGCGGCATATCAAATTACGAACGGTGTAG 1387 36 100.0 32 .................................... GATCCAAGAAAAGATGAAATCTTAAGATACTT 1455 34 94.4 0 ..................................-- | ========== ====== ====== ====== ==================================== ================================ ================== 22 36 99.7 30 GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Left flank : TAGCACTGTACAATACTTGTGTAAGCAATAACGATCCAAGAAAAGATGAAATCTTAAGATACTTG # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTGTACAATACTTGTGTAAGCAATAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //