Array 1 535086-536578 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGETL010000002.1 Salmonella sp. 32070301201500052SM NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 535086 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 535147 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 535208 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 535269 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 535330 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 535391 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 535452 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 535513 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 535574 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 535635 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 535696 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 535757 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 535818 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 535879 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 535940 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 536001 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 536063 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 536124 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 536185 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 536246 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 536307 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 536368 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 536429 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 536490 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 536551 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 552710-554613 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGETL010000002.1 Salmonella sp. 32070301201500052SM NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 552710 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 552771 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 552832 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 552893 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 552954 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 553015 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 553076 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 553138 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 553199 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 553260 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 553321 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 553382 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 553443 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 553504 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 553565 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 553626 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 553687 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 553748 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 553809 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 553870 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 553932 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 554035 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 554096 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 554157 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 554218 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 554279 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 554340 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 554401 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 554462 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 554523 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 554584 29 96.6 0 A............................ | A [554610] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //