Array 1 87303-85689 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOIA01000006.1 Nitrosomonas marina strain Nm71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 87302 37 100.0 35 ..................................... TAGGCGGTGGACTGCAATCTGCAGGCAATGCGCTC 87230 37 100.0 34 ..................................... CGCTGTCAACGATACTATTCAGCACGAGAACCGG 87159 37 100.0 35 ..................................... AGCATGAGACAACTCAGCAGTAAGTTCTGCTATTT 87087 37 100.0 34 ..................................... TAATTTCGGGGTTTTTTTCTCATGCCAAAAATGG 87016 37 100.0 35 ..................................... CCTAACATCTTCTCTTGTTTCAATATCGTGAATAC 86944 37 100.0 34 ..................................... ATTAAATCGGTGAACTCCGCAGTAATAGGATACT 86873 37 100.0 35 ..................................... ACGTCGGTGGACAACCGCCTCGGTGGATTGGCGGG 86801 37 100.0 34 ..................................... TCTACCAAGCCAATGACTTTGTTCACTCATAATA 86730 37 100.0 35 ..................................... ACCTTTAAAAGTTTCTGAAATAACATCTGGATTTT 86658 37 100.0 34 ..................................... TTATAATCACAAGAATGGGACTCGATTTGCATTG 86587 37 100.0 36 ..................................... AAGCAGAGCAACAACCAGCCCCGCAAGTGACACCAA 86514 37 100.0 34 ..................................... CATGAGTGCCCGCCCAGAATGTCGGCGTGCTGTC 86443 37 100.0 35 ..................................... TTAGAATAGAAGAAAACAGAAATCCAATGATAAAA 86371 37 100.0 34 ..................................... ATTAATATTTTGTTTATGATGAAATTCCACCATC 86300 37 100.0 34 ..................................... TTCGCGCCGGAATCGTGGCACCCCACGCCCAAAC 86229 37 100.0 34 ..................................... ATACAGTGGCTTACCTGCCGCGATTGCTACAAGG 86158 37 100.0 34 ..................................... TGTGCGCCGGTAACACCCATTTGACCGGCCGCTT 86087 37 100.0 34 ..................................... AGCGTAACTCGTGCCGATTGTTGGCTCATACGGC 86016 37 100.0 34 ..................................... AAGTATCAACCGAGAGAATCGACGTACGCCCTTG 85945 37 100.0 34 ..................................... TGTACTACCATCACGAAAGCCTTGATACAGTTGG 85874 37 100.0 34 ..................................... CTTCCAGCTCGTACCGTTCCCGGATCAGGTCTTT 85803 37 100.0 36 ..................................... CCCTCTTTGTCCCGATAAACACACATCACAAAATTA 85730 37 91.9 0 .........................A.....CC.... | AAC,AA [85698,85702] ========== ====== ====== ====== ===================================== ==================================== ================== 23 37 99.6 34 GTAGCGCCCGGCTGAAAAGCCGGGCGAGGATTGAAAC # Left flank : ACGGTTACATTCCATTTCTGGTGAAATAATATGCTGATTATTATTACTTATGATGTTTCAACAGAAACCCGCGCAGGACGCCGCAGATTGCGGCGTGTAGCAAAAATCTGCGAAGGCCACGGTCAACGTGTTCAGAAATCCGTTTTTGAATGCAAGGTCAATTTAATGCAATTCGAAGAACTCGAACGACAACTACTGGCTGAGATTGATGAAAAAGAAGACAGTCTGCGTCTATATCGATTGACAGAACCTGTTGATTTGCATGTTAAGGAATACGGCAATGTTAAATCTATTGATTTCGATGGACCACTCATTGCCTGAATTACGCGGACATAAAGCGACACCCAAATACCGGCACGTTCGCGCAGATACTAATATATTGAAATACAACAGCATTTCAAAAACCACTTATTATCCGGTTCCTCCTCCACGAATAAAATGCAGCAGTTCGCGTAATTTGATAAAAATTAACTTTAGTATGATAGAGTTATAGTTGTACC # Right flank : AATTTACGCATTTTTACGTAAAAAATGTTACTCCACTACTGCGATATAACCAGTTCTATATATTCTTTTAATGCAACGGCGTGATTATGCTCAGGATCTTTTGCTGCATATAAAAGCACCACATCGGATTGATTGATATAGCCCAGCAATTCACCAACGGCTTCTGTCCCGGCATCCAGTTCGGCAAAATATTTATCCTTGAATACCTTCCATTTCCGGGCGTCATGCTGAAACCAGCGGCGAAGCCCGGTTGACGGCGCTACAGATTTCAGCCAGACGTCAAGGGCTGCATTTTCCTTTGAAAGCCCTCTTGGCCAAAGCCGGTCGACCAGTATTCTCATGCCGTCCTTCGGGTCAGGTTCGTCGTAAACTCGCTTGACTGTCAGTGTCATCAAATCGATCGTAGCTTACCGTACAGCATTGAACGACGGCAGGCCTCAATTCAAATACGCTCATCACAGTTAATCCTGATTGACGGTTTTTTTTGCTTTTTTCTTTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCGGCTGAAAAGCCGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.80,-18.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : NA // Array 1 8720-8344 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOIA01000047.1 Nitrosomonas marina strain Nm71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 8719 36 100.0 34 .................................... ATAGAATACTTCCTGCTGCAGTACCATGCAAATA 8649 36 100.0 31 .................................... CTGAAAACACGAGATCCGGGCGTTGCTTTTG 8582 36 100.0 31 .................................... GTCCAGGGTAGCCACAATACGCACTTTCTTT 8515 36 100.0 32 .................................... GAAAAACTTATCCATTAAGACATTAAATTCCT 8447 36 100.0 31 .................................... AATTGAATGTAAATTCATTCATCACTTTGAT 8380 36 86.1 0 ............................AAA..C.A | A [8346] ========== ====== ====== ====== ==================================== ================================== ================== 6 36 97.7 32 GTTGGGAAGTTGGGCCGAAGTCAGGCCCGTTAAGAC # Left flank : TTCTGGAAGCTGCAGGTGTTCGCGTACAAAAAAGCGTTTTTGAATGCGGCCTGTCACCTGATGCGCTCATCGCGTTGCGCCTACGGCTACGCCGCCTGATCAATCCGCAGGAAGACCATATACTCATCACACCTGTCTGTGGCCGCTGTCGTTATCATATACAATGGCAGGGAAAAATACCCGATGCGTCGAATGCACCCTACTGGATCGTATAGTAAATATACCAATGCCAATCATCAAAATGCGGCGCACTGTAAAAACTGAAAAAAACTGACAACCGGATTGCCTAATGTTTGAGCGGAATTTTTCAAAACCAGCCACATATTCAGTATGATAACGAACATACTTAATCTGTTTTCCACAGAAAAACGCGCCGCACTAGTATTCATGCGGGTTCTGGGCTAAAATGAGCATGCTTTCCAGCTTGTGGGCAAAGAAAATGCCGAGACCGCCGATTTTGCCTCTGTATACCGCATGGATAAAGGGCTGTGAAAGGATCG # Right flank : ACGGGCGTCTTTTTGACGCCCGCTTTTATATTTCGAGAAACCGAAACCCTAACACCTGTCTGATTGCAGTTTATTAATTCTGGATAAACGAACTATCGAATTTTTCATTAAATCGGTCATGAGTAGAACCGGATTAATAATAAACAACATTGATTAACAAGGGGCAACTATTGGGGCAATTGTAACTATATTAATATAAATAATATTTTATAAATATATAGTTATATAACTTATTCGGTAGTCGCCGTCGTCGCGTGTTTGCGGGGATTTCTGCGGATTCTTGCGGACTTCGCAGTTTCAAGATAAACCACGAATTCGCTCATTTTTTCTCTCTTCGCGCCATTATTCTGTAACCGTCCAACCCCACCATCTACAAATTAGAATCTGATCTGTTTATCCTCGGGCCGTTACAACACAACGCAAGTCCTGTCGTTCGGAACTCAATTGGCAATCTACCTCACTAAGTGATATGGTTTACCAATGAGAAGAGTATTTCTGAT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAGTTGGGCCGAAGTCAGGCCCGTTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 12779-12472 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOIA01000047.1 Nitrosomonas marina strain Nm71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 12778 36 100.0 32 .................................... GTCGGTACCGGCTTGCTCGCTTTTGCGGTTAT 12710 36 100.0 32 .................................... TTGCTGTCTATCGTATAGCAAACCTTCTTTGC 12642 36 100.0 31 .................................... TCCATTTCCATTATTAACCTCCTTGTGTTAA 12575 36 100.0 32 .................................... TTTAGAATTGCTTGAACCTCAGTGCTGCTTGG 12507 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 5 36 100.0 32 GTTGGGAAGTTGGGCCGAAGTCAGGCCCGTTAAGAC # Left flank : TACCCATAACCGATCAGCAACTCGAATTTGTCAACTGGAGATACTATTCTACCAACCGGCCGTATGGCATTCCCTGTAATGGATTAATAGGCAAGCTACATTACACTGGACACATCCCGGCCTGCATAACAAATTTGCTGTACTGGGGGCAGTGGTTTGGAGGGGGACAAAGCACCGCAATGGGCCAAGGAATGTATTATATAAACACGCCACTTATTAAATTTAATGCTGCTGAATAAAAATGCGGCGCACTGTGAAAACAATAAAAAATTTTGTGTCAACCTGCCTGTTTTTTAAGCAACTGTTTTGCAAACCATGTTTACAATCAATATGAAAGAAACCACAATTCACCCTGTTTCGAGGCAAAACCGCGCCGCACTTGTATCCATGCGGGTTTCAGGCTAGAATGGCCTCGCTTTCCAACTTTTGGGACAGGATCATGCCGAGACCGCCGTTTTTGCCTCTGTATGCCGCATGGATAAAAGGCTGTGGAGGGATCG # Right flank : CAACACAACCATCTGTGCAGTTGCATTCTGCGTTGGGAAGTTGGACCCATCTATTTGCTGCAGGGCGGATTGGTGAAACGCCATCCGTCCTATTGCATATTAGAATAAGACCGATTCACGGAGGATAACGAGCGCTTGTCCATCGCGCCTTGAAGCTGTTATGCTGCGGACTTGGAAAAACAGGGCGTCACTATGCAAACCTTACCTACAAACATCCAGGAACTGCCAGTCGACGAACGAATAAAACTGGTAGAGGATATCTGGGACAGTATCGCGGCAGATCAATCCGTTTTACCGCTGACAGTCGATCAGAAAAAGGCGCTTGACCAACGGCTGGACGCTTATGAAGTAGATCAGCTGAAAGGCCGAGAAGCTACCGAATTGATTGCTGAAATCAAAAAACAGTTGTGAAACAAAATATCTATTTTCGCACTGAAGCGGAAAAAGATATTAAAACGGCTGCCGCATGGTATGAGAAACAAAACCCAGGTCTTGGCGGA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAGTTGGGCCGAAGTCAGGCCCGTTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA //