Array 1 160514-159020 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050968.1 Salmonella enterica strain FDAARGOS_686 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 160513 29 100.0 32 ............................. GCGGGTAAAAATGCAGACTGATATCAAACGCA 160452 29 100.0 32 ............................. GGCGGCTGGAAAAAAATAACCCCCCTGATTAC 160391 29 100.0 32 ............................. ATACCGCGGACTTATTCCCCTTGCGGGTGTTG 160330 29 100.0 32 ............................. CAACGAGCGATTAATTGCCTGTAACGCTTCTG 160269 29 100.0 32 ............................. GAGTATCGAAAGAATCGTCGTGAGTGAATTCA 160208 29 100.0 32 ............................. TTATTTCGATTGAGTTATTCCAGTTTGCATCC 160147 29 100.0 32 ............................. GCATGTTCACTGAATGCACATGGTGGATAATC 160086 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 160025 29 100.0 32 ............................. TGAGGTTAATACCAAATGACTATTAATAATCT 159964 29 100.0 32 ............................. TGTTCAACTCGTTGATTTTACTGACTGCGAAA 159903 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 159842 29 100.0 32 ............................. GCTCTGACAGGATTCCCCTGATGCTGGATGCG 159781 29 100.0 32 ............................. CCACAGCGCGAAAGAGGTCTATTCCTGGCTGT 159720 29 100.0 32 ............................. GTTTCCGGGCAACTTGCTCCCACGTTTGACAA 159659 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 159598 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 159537 29 100.0 32 ............................. CGATGGAATTTAGGGGGATATCTCAGAATAAA 159476 29 96.6 32 ............................A CTTTGGTGCCTATTGGCAACCCCATTAAGTCC 159415 29 100.0 32 ............................. GTTTTTTCTCAGCGGCTGGCAGACCTGATCGC 159354 29 100.0 32 ............................. CGAGAAATGAGTGCCATTTAAACCCCGCCCGT 159293 29 100.0 32 ............................. TGCCGACGATACCCTGCAAAATCTGCGGCGGT 159232 29 100.0 32 ............................. GCCAACGGCTTTATCACTGTGGAAGCGAAAGA 159171 29 100.0 32 ............................. GCCAGTTCCGTACTGTATGGCATTTTCTTATG 159110 29 100.0 32 ............................. GGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 159049 29 96.6 0 A............................ | A [159022] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGATGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCTTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179936-178381 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050968.1 Salmonella enterica strain FDAARGOS_686 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 179935 29 100.0 32 ............................. CCGTCCGGAGCAGGCGCTAGTTCTTCCAGTGA 179874 29 100.0 32 ............................. TTTTGCGATAAAAATAGGTTTACCCCTTTCAC 179813 29 100.0 32 ............................. ACTGGGCCGCAGTAATGGCCCCGCTGTTAAAA 179752 29 100.0 32 ............................. GCTGAAATGTGCGCACAATACCAGTCGATGGA 179691 29 100.0 32 ............................. CCCGTGTATTTTTGTTCGGAACTGGCGTTTGA 179630 29 100.0 32 ............................. GCACTGTACGAAGACGGGATGCTGGAGATTCC 179569 29 100.0 32 ............................. ATGAGCGTACTGTCATCTTTGCCGACAAAGAC 179508 29 100.0 32 ............................. CCCCGCCCCAACAAACGCGACCATAATAATTA 179447 29 100.0 32 ............................. GGTGTCAAGGACGTTGGTGTGGTGCTGGAGTC 179386 29 96.6 32 ......T...................... TCGTCGGCCCCTCAACATTTACGCAGGATATA 179325 29 100.0 32 ............................. AGAATTACGCCCGCACAACGACCGTCACCGCG 179264 29 100.0 32 ............................. CCACGCGCCGAGAGCTGGCGCGATTCTTTCGA 179203 29 100.0 32 ............................. CGTTGGTGGCTGGTGATTTTGCATACACGGAA 179142 29 100.0 32 ............................. GATTTTACGCGCTGACGTACTTGATCAGGGGG 179081 29 100.0 32 ............................. GCTGGCGACACAAAGAAAAGCGCGGCGTTGGT 179020 29 100.0 32 ............................. GCACCGACGACGATGATCAGTTAACCGGTGTT 178959 29 96.6 32 ............................T GAGGCTGAGTGCGCAAGGTGCGGTCGAGGTGG 178898 29 100.0 32 ............................. GGGGCGCGGGTTTACGGTTTTAGCGAAACGCC 178837 29 100.0 32 ............................. GCGATCATGGGCGCAGTCGGTGCGGGCTACCT 178776 29 100.0 32 ............................. GCGCGCAGATTCTCGGCGGCTGGGAAAACACG 178715 29 100.0 32 ............................. CCAAAAACATGTACGTTCATAATTTAGTCCTT 178654 29 100.0 32 ............................. CGACGATCGCGGGCAATTAACGATCAAATACG 178593 29 100.0 32 ............................. GCTCCAACCGTGGACCCGAGGTTGATCAGTAC 178532 29 100.0 32 ............................. AATTTGATTATTTTCGCAGATCGAGACGTAAA 178471 29 100.0 32 ............................. GGAATATATATGGATGGTATTAATTTAAATAG 178410 29 89.7 0 .......................TG...T | T [178383] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTACTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : ACCCGCGTAATGTGGACACGGCTCTAAGCGAGGTTCTGGTTTTCAAATTGTTCCGGACTGAGACCGCCACAGGCACTGTGGCGACGCCACCGATTGTAATCGCACTCGATATAATTAAACACTGCTGTCCGCATTATTTCCCGGGTGGCAAAGTCCTCTCCGTGGATACATTCCACCTTCAGCGTGTGGAAGAAGCTTTCCGCGCAAGCATTATCGTAACAACAACCTTTGGCACTCATGCTCCCGCGCAAATTATTCCGTTTCAGTAAGCTCTGATAATCCGTTGAACAGTACTGCCCGCCGCGATCCGTGTGAACGATGACATTCTTCGGGCGCTTACGCCGCCAGAGCGCCATTTGCAGTGCATCACAGGTCAGTTGCGCTGTCATGCGCGACGACATAGACCAGCCAATGACGGAACGCGACCACAGATCGATGACCACCGCCAGGTACAGCCAACCTTCATCCGTGCGCAGATACGTAATGTCACCCGCCCACTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //