Array 1 117599-114927 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJELM010000017.1 Acinetobacter baumannii strain MRSN32959 MRSN32959_contig00017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 117598 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 117538 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 117478 30 96.7 30 ............................A. GGGCCGCAACCATACGGTCTATGACTTCCA 117418 30 96.7 30 .............................C ATGATCATAGCCCTTATAGATATCGTATTT 117358 30 96.7 30 ............................C. GCGAAAGCGGGGTTTTTTATTGCCTGAAAT 117298 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 117238 30 96.7 30 ............................A. CTGCAAGACCACTGATAGTTGTTGAGAATC 117178 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 117118 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 117058 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 116998 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 116938 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 116878 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 116818 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 116758 30 96.7 30 ............................A. ACATGCCCACGTTGAAAATCGGGTACCAGT 116698 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 116638 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 116578 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 116518 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 116458 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 116398 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 116338 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 116278 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 116218 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 116158 30 96.7 30 .................T............ CTCATCGTGAAGGTTTTGCAAATATGCCTT 116098 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 116038 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 115978 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 115917 30 96.7 30 ............................A. AGCACGAGCAAGTTCTTGAGATGCCAAAAA 115857 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 115797 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 115737 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 115677 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 115617 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 115557 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 115497 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 115436 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 115376 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 115316 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 115256 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 115196 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 115136 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 115076 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 115016 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 114956 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 45 30 95.2 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GCATAAGCATAAAAATTATGTGTGAATATC # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.28, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 300-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJELM010000018.1 Acinetobacter baumannii strain MRSN32959 MRSN32959_contig00018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 299 30 93.3 30 ............................TC ATCAAAGGCTTTGAGGGTAAGCGCCTTTGG 239 30 93.3 30 ............................TG TTGCGCTGTTTTTGAACGTGTAATTGGATA 179 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 119 30 100.0 30 .............................. GGTAATACAATTCAATCTCACTACAAGAAT 59 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================== ================== 5 30 96.0 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : TATATTTTACGTGTTGATTCAACTACGGGT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //