Array 1 124670-124421 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVSX01000002.1 Streptococcus anginosus strain gc gc.s7-trimmed-pair1_paired_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 124669 37 100.0 33 ..................................... TGTCAAGCTTCTACCATCTGCATTTGTGAGTTG 124599 37 100.0 36 ..................................... GCGTCATTTCCATAACGGTCGCCCATGTCATAGTAA 124526 37 100.0 33 ..................................... CCTGGTGTGTGAATCAAAACTTTGTTTGACTTA 124456 36 89.2 0 ..........C....................A-...T | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 97.3 34 GTTAGTAACCTATATTACCTCGAGAGGGGACGGAAAC # Left flank : ACCTCGAGAGGGGACGGAAACGCAAACGGCTTAGGTTGTGAGTATAACTTTCTC # Right flank : AGATAAAAATCGCTCTAGTGGGCGCTTTTTGTTATTTTGAAGTTCAAAAGTTCTTGAGGCAAAATGTCTCTTAGAAGTTTGAATTGCAAAAGAAGACAAAGGCTATCTATTTTTTGTAAAAAATCCGAAATTTTAGTATAATAAAAAGACTAGAAGTATGAGGTAATGCTATGGAAATGAAGCAAATTAGTGATACAACGATTAAGATCACAATAAAATTAGAAGATTTAGAAGAACATGGAATGGAGATGTCAGATTTTCTTGTTCCGCAAGAAAAGACAGAAGAGTTTTTCTATGCAATTTTAGATGAGTTGGAAATGCCAGAGAGTTTTTTGGATAGCGGTATGCTCAGTTTTCGTGTAACTCCTAAACCAGACCGACTGGACGTGTTTGTCACCAAGTCTAAGATTGATAAGAATCTGAACTTCGAGGATTTGGCGGATTTGCCAGATGTAGAAGAGCTGTCTCAAATGTCTCCAGATGAATTTTTAAAGACATTA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTAACCTATATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 310-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVSX01000031.1 Streptococcus anginosus strain gc gc.s7-trimmed-pair1_paired_contig_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 309 37 100.0 34 ..................................... AAACTGTGAGTGACTCCAACCAAATTGATGTTAA 238 37 100.0 37 ..................................... CTTCTTGTTTGTTCATTTTATTCCTCCCACATTTTCA 164 37 100.0 35 ..................................... TTACAGCATCGTCGTAACAAGTTACAGGTTTTTTT 92 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 100.0 36 GTTAGTAACCTATATTACCTCGAGAGGGGACGGAAAC # Left flank : CAAGCTAAACCTGTCGCACCCAGATGCCGATGCTATCATTGACTATCTGGAGCATGAGATGAAGAAGGAGCGTGGGAGTGAAAGCAAGGAAAGAGTCTATAACAAGACTTCTACTTTAAACCTTTTGTCTTTTAGCAATATTTTGGAATTTTATCAGGCGGAAGAGTCTTTACTGGAAAGTATCAAATTAGTGAAGAGTTTTAACGGGGAAAGAAATCGTCTAGCACATGGTCTCGCTGAAATCGATAAAAAGGCAATTAGCTCAAAAAGATTGCGCGCCTTGTTGGGAACATTAAAGGATGTCCTCCAGTCCAACTATGATATTAGAGAAGAACGATTCTCCTATTACGATGTTAAGAATGAGGAGTTACTTGAACTGCTCAAGTAGCTCTCAGTTCTTCCTTTTTGGTTCAAAATATGTTATAATCAAAGAAGTTTCCACTTTTGGGCTGTTAAAACAAGATATGGTGGTTTTCTGGTATTTATGTACAAAATATAGG # Right flank : CCCAGTTGGTTTTAAGTATTGCGATGCATAAACCAGTTAGTAACCTATATTACCTC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTAACCTATATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 9697-9010 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVSX01000031.1 Streptococcus anginosus strain gc gc.s7-trimmed-pair1_paired_contig_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 9696 37 100.0 35 ..................................... ATAATTTGTTTCATGATATCCTTCTTTCTGTCAAT 9624 37 100.0 37 ..................................... CCAAGCACCTTTCCAATATAAACCAACTTCACACAAA 9550 37 100.0 33 ..................................... TCTTTAGAAATCATCTTACGAGCAATACTATTA 9480 37 100.0 35 ..................................... TTTAGCAGCAAGTTGCCAAATTGTTCCTTCTTCTT 9408 37 100.0 36 ..................................... TGAAAAAGAACGGTAGATTAAACCATTCAGTAACAT 9335 37 100.0 34 ..................................... AAGTCATGTTTTCGATTTTACTTTCTTTTTTTCG 9264 37 100.0 36 ..................................... TTTTGTTCTGACATAATTGTCCTCCTTCTTAATTTG 9191 37 100.0 35 ..................................... ATTGCAGACTTCACATGTGTCTAATTCTTCGTCTG 9119 37 100.0 36 ..................................... TCGTTCTGTGTTTGCGCAAGCTGCAAAGGATTTTAA 9046 37 81.1 0 ..............................TTTTTTA | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 98.1 35 GTTAATAACCCATGTTACCTCGAGAGGGGACGGAAAC # Left flank : CCTCGAGAGGGGACGGAAACTGACCTTCCCATTTATTATAGATGATGTTCATA # Right flank : CATGAAATTCGCACAGATACTTGACGACGCTTTCATATTATGCTAATATATTGATTGTAAAGAATAGTTCTGATAAACAGAGAGGGCGCCCTTAACTGGTGAAAAATACTTTCACTTTTTGGGGTGCTTTTTTAGTAAGGAAGGTTAGAAATGTGAAGAAAGTACAATTGTATTTATCAAACGTTGAAATAAGAGACGATGCTCTAGTATCTAAGTTGCAAGGATTTCTAATGAGCCAGATTTCGGAGGATTTTGTGGATTTTCTTCATGAACAAGAGACAAATCCCTACTCTTTAAATCTATTATCCACGAGAGAAGGAACGATATGGACGGTCAATCTACTTACCCAAGAAGCAGAAGAGAAGATATTGCCTCAGCTTCTGGATTTAGAAGAGATTCAGTTAGATACTTACTCAGGAGCCATATCTGTAAAGAGAATAGAGATTCAGACTTTATCACAAGAGACCTTATTGGAAATTTTTCGGGAGGATGATCCTAGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATAACCCATGTTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 15377-17129 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVSX01000008.1 Streptococcus anginosus strain gc gc.s7-trimmed-pair1_paired_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 15377 36 100.0 30 .................................... TGACATTCTAATGCTCATGCCTGCAATTAT 15443 36 100.0 30 .................................... GGATACAGATTTTGAAGAAATTAAACCAAA 15509 36 100.0 30 .................................... AGTATTATAATCTTTACGGTCATCAAACCA 15575 36 100.0 30 .................................... GAACTACGTATATCACACAATCCAGCTGAT 15641 36 100.0 30 .................................... ACCAGATTTCAATTATTTTTCTTCAATGAA 15707 36 100.0 30 .................................... GACTGTAGTAATCATTTTGCTAGTTGCTAC 15773 36 100.0 30 .................................... CGCTGAAAGAGAAGAAAGCGATTCTTGAGG 15839 36 100.0 30 .................................... CATTCTCACCCCCTTTCAACCCTTACTTTG 15905 36 100.0 30 .................................... AATCCCATAGCCTGATAGACATCATGGAAG 15971 36 100.0 30 .................................... ACCAGCCAAGAAGAAAGTTAAAAAAGAGAA 16037 36 100.0 30 .................................... AAGAAGCGGTTGAATCAATTGAACGTGTGA 16103 36 100.0 30 .................................... GTCAATGACTTTTAAATATGGCGGTTTAAG 16169 36 100.0 30 .................................... ACCAGAAGCCGTTAAAGTTTCATTATGTTT 16235 36 100.0 30 .................................... TTATGCACCAAAACAAAGCGTCCAGTTTGA 16301 36 100.0 30 .................................... CTGATACAGCGTGACTATGAGATACAAAAT 16367 36 100.0 30 .................................... CAGCAACTGGTCCATATAATAATGTGGTTA 16433 36 100.0 30 .................................... AACGCAAGCAAAACAGGCAGGGTTTGGAAA 16499 36 100.0 30 .................................... CGTAGCACATTCGTAAAACTGCCCTTTCAA 16565 36 100.0 30 .................................... ATGACAGTTGCCCAGCAACATCAGTATACG 16631 36 100.0 30 .................................... AGAGCTGGATTGAACTCAATTGGTACGATA 16697 36 100.0 31 .................................... AATTGGGGAAAGCTGGCTCTTTGGATGTTAA 16764 36 100.0 30 .................................... TGACATCACTACCGACCCAACCTTACTAAC 16830 36 100.0 30 .................................... CAGCAAGTGTTATTGCTATGGCTGGGAATA 16896 36 100.0 30 .................................... TACGAGGGAACGAGCGGATATGACAACGTT 16962 36 100.0 30 .................................... CGTGGTCACTACATCAGCTAGTGTCAATAA 17028 36 100.0 30 .................................... TAGAACAGGTCCTTATAATAATGTGGCTAT 17094 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACAGTTGAATGAAAAGCCTGAAGTGAAATCTATGTTAGAAAAATTAGTTGCAACTATTACAGAACTAATTGCTTTTGAATGTTTAGAAAACGAGCTGGATTTAGAGTATGATGAAATAACAATTTTGGAATTGATTGATGCTTTAGGTGTAAAAATTGAAACACTAAGTGACACTGTTTTTGAGAAAAGTTTAGAGATTGTTCAGGTGTTTAAATATCTTTCTAAAAAGAAACTGCTTGTCTTTGTGAATGTATCATGTTATCTGTCTGAACATGAACTAGCTAAATTGGTAGAATATATTCAACTTCATAATATAAATGTACTGTTTGTTGAACCAAGAAAAGTATACGACTTCCCTCAATATGTAGTGGATGAGGACTATTTCTTATCTTGTGAGAATATGATATAATATTAGTAAATATAAGGAATCATTTGAGCTGAAGTCTAGCTGGGACGAATGGCGCGATTACGAAATTTCGAGACAAAAATTGGTCCACGAG # Right flank : CACAATACATTTTAATCATAGGGCTTGCAAATTTTTCCAATCGTGTTATAATACTTTTTAGAGACATATCACCTACAGGAAATCTTTCAGAGAGCGTGTGGAGCTGGGAATCACGCAGAGGATGTAGCTGGGACTACTCGATTTGTTTTTATGCAAACATGAAACGGTGGCTACGTTAGAGCCAATCAGAGGTGTCAACAAACTTTTTTGTTGTACATGAATGAAGGTGGAACCACGTTGCGACGTCCTTTTAGGATTGTCGCTTTTTATTTTGTCGGAAGGAGGAAGAGTTATGCTCTATATGATTGGTGGATCGCCTTACAGCGGGAAGTCAACAATTGCTTTCCTTCTTGCTCGGAAGTACGATCTGCTTCATATCAAGTTAGATGATTTGACAGACCAGATGATGGATCAAGCAAGAGCGAACGCAAAGCCGATTTCCCTTCTGAGACAGGACAGAAGTCCGGATCAAATCTGGTTGAGACATCCAAAGGAGATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //