Array 1 32-662 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNBZ01000001.1 Enterococcus pseudoavium strain CBA7133 CBA7133_0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 32 36 100.0 30 .................................... GTAAACTGTATACAGCAAGGAGGGCTTAGA 98 36 100.0 30 .................................... AAATTGTCTTCATTTTTCCCCTCCTAGTTT 164 36 100.0 30 .................................... TAATAAAACAACGTTATTGTAAGGCCCGCT 230 36 100.0 30 .................................... TAAGAGTGAAGCCGTTTGGTACTACATAGA 296 36 100.0 31 .................................... TAAACCATTTTTATCCCTCCTTTGGAATCTG 363 36 97.2 30 T................................... CCACAAGACTTTCAAAAAGCTCAACCAAAA 429 36 100.0 30 .................................... AAACAATTTGATCATCGGTTACTCGTTCTT 495 36 100.0 30 .................................... AAACTGTCGTTCACCTGAAAAAATGAAATA 561 36 100.0 30 .................................... GACTGAAATCCCAGAACGCACCATTCAAAA 627 35 77.8 0 .........T...C.......A.A..T...-...TG | T [653] ========== ====== ====== ====== ==================================== =============================== ================== 10 36 97.5 30 GTTTTTGTACTCTTAAAGATTCAGTAACGGTAAAAC # Left flank : CTTTTCTAGCAGTGGAGTTTAGCGATGTTTTG # Right flank : GACTTTTCTATTTTTGGTCTAGTCGGTAGTACCAATTTGAAACCGGGCTTTTTCAGTAAAATACTAATAAAAGAAAAAATTTCGAGAATTAGGGTTGAGCAAGTAACCAGAATGTGCAAAAAACTCCGTCTACTTATCAATAGTAGACGGAGTTTTTGGTTGGCTTATTTTTTTAGATCGACGACATTATCAAGGACTGGTGTGTCAGGTCTTTCATAGTGGAAATTCGAAGTATCGTATTTGAAATTGTATTTGTTACCTAAGAAATATTTCGCGATATGGAGTGTACGGTCGCTGGAGCGTTCTAAATTGGAACTAATGTCGATCAGTAAGACACCGTCTGCGGCCCGTCCTTCACCTTTGGTCATAAGCTTAATGTATTTTTGGCGTAATAGTTCTACCAATTGATTGATTTCTTCTTCACGATAAAGCATTTTTTGTGCTAGATCGATGTCGTCATTTTCTAAGACTTGCAAGGCGTCGTGAATATTTTTTAATAC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTTAAAGATTCAGTAACGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 494684-499076 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNBZ01000001.1 Enterococcus pseudoavium strain CBA7133 CBA7133_0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 494684 36 100.0 30 .................................... AGGACTTTTTGGTTTTATCAAAAGATGATA 494750 36 100.0 30 .................................... AACTTAAAGCAACGGCATTAGTTATTAAAA 494816 36 100.0 30 .................................... CATAAAAACCCGCTCCGCTAATCCGCATTT 494882 36 100.0 30 .................................... CTGGGTCAGATTAAATCAATCCAGTTTAGC 494948 36 100.0 30 .................................... GTCGTATCTCCTACCATAACGGCTTGTGCT 495014 36 100.0 30 .................................... AGTTTACCATTAACCACATCAAAGCTAATC 495080 36 100.0 30 .................................... TGGAAGAACTTTATAATAACCCTCATTTTT 495146 36 100.0 30 .................................... TGATTAAACAAATGTTAGTTAAATATTATT 495212 36 100.0 30 .................................... TTGATGTCTTCGTAGAATGGGTAACGTTTG 495278 36 100.0 30 .................................... TAACGTTCAGAATTTCCAGTATCATCATAA 495344 36 100.0 30 .................................... GAATTAAAGTCTGCCAAGCAAGATTTGACT 495410 36 100.0 30 .................................... CCAGAAATGCTCGATGATTTTGAGCATGAT 495476 36 100.0 30 .................................... AATTTCCGATAAACGTAATCAACTTGCAGT 495542 36 100.0 30 .................................... TAACGAAAACAAAGATAAATTACTTTCGAG 495608 36 100.0 30 .................................... AGCTGCCCACGAAACTACTTTCCCATCAAT 495674 36 100.0 30 .................................... ACGGCGTTGGCAATATGCGCAGCCGCTACG 495740 36 100.0 30 .................................... TTAAAATTCAGAAAGGAGAAACTTTCATGC 495806 36 100.0 30 .................................... CAAAATCCTTCTGACTCATTTGTGTGATAT 495872 36 100.0 30 .................................... CAATCGAGCATCTGATTCAGATTGATGTAG 495938 36 100.0 30 .................................... AGAAGTAGCAGTCTTACATTTTACTAAAAG 496004 36 100.0 30 .................................... CTGAGCCATGGCTAAACATGACAAAATCGG 496070 36 100.0 30 .................................... TGAATACTTGCATGCCCTAACTGATCTTTG 496136 36 100.0 30 .................................... ATATCTGTTCGTCATTCAATCTATCTTTGG 496202 36 100.0 30 .................................... TACCAAGTAACCTAGCCGATGAAGCTACTA 496268 36 100.0 30 .................................... TGAAACATTGTCAGCAATCACTGCAGATTT 496334 36 100.0 30 .................................... ATTAAGATGTGATTCTCTCATAGCACTCAA 496400 36 100.0 30 .................................... CGCCTGATGGCTGATGCAACAAATGTATCG 496466 36 100.0 30 .................................... AATGGCTGGGATGGAGAAAATGACGACGCT 496532 36 100.0 30 .................................... CATTCCATCGCCAGCAACAAACTTCACGAG 496598 36 100.0 30 .................................... TATATAAATAGAAAAGCAGTCGATCGATAT 496664 36 100.0 30 .................................... TTGTCCCAACCGGCAACAACATGCGCAACT 496730 36 100.0 30 .................................... ATGAAATGGAAGGCAAATTTATTCAAATTA 496796 36 100.0 30 .................................... ATGAACTAGCTAAACGACTTGAAACAGCTA 496862 36 100.0 30 .................................... CATTTTTCGAACAGGCAAAAATGACAAACG 496928 36 100.0 30 .................................... AGTGAAGATTAACTGGAAATTGAGAATTAG 496994 36 100.0 30 .................................... AAAAACACAATCGGATAACTGGATTGCTTC 497060 36 100.0 30 .................................... TTTAGAACTTTTCTTGCGTTACATTTGGTT 497126 36 100.0 30 .................................... ATCGTACGTTTACCTTCAATCACATGAGTT 497192 36 100.0 30 .................................... TTCGCCAGCTGCGAGCGTATCAACAACCTC 497258 36 100.0 30 .................................... AAATGGGCGGTTATTTCCGCGAATTAGAAC 497324 36 100.0 30 .................................... TTACCTCATCGCAACTAGCGACAATCACGC 497390 36 100.0 30 .................................... ACTGATGAAAATAAAGAAAGCAGTTGATCT 497456 36 100.0 30 .................................... TAGTCGGTTGCTTTTTATTTTGGAAGGAGC 497522 36 100.0 30 .................................... AAGGCGGTGTGTCACAAAGTCTAATCGATC 497588 36 97.2 30 A................................... TGGTACTTAACACTCTATGAGTTGTTACAG 497654 36 100.0 30 .................................... TGAAATGAAAATGGTGGAGTTAAGTGATGG 497720 36 100.0 30 .................................... GACGAATTTGCTTTTGGGGATGAGAGCATA 497786 36 100.0 30 .................................... TCTATTGATTTTGAGCGCGTCGCAATCGTT 497852 36 100.0 31 .................................... CTATTACGATTATGATTTAACGCTTTTGGAG 497919 36 100.0 30 .................................... TTTATTTTATTATCCACTTTTAAAAACACT 497985 36 100.0 30 .................................... GGGGTAATGATATGGCTGAACAACAAATAG 498051 36 100.0 30 .................................... TTTATTTTATTATCCACTTTTAAAAACACT 498117 36 100.0 30 .................................... GGGGTAATGATATGGCTGAACAACAAATAG 498183 36 100.0 30 .................................... GGCGGCACGTTCGATCCCGACACCAAGCAG 498249 36 100.0 30 .................................... ACGGAATATTTATATAACGTTTCACGCGTT 498315 36 100.0 30 .................................... TGAAAGACGAATCAGTCAAAGTGAAGACAG 498381 36 100.0 30 .................................... TTTTCTAGCAGTGGAGTTTAGCGATGTTTT 498447 36 100.0 30 .................................... GTAAACTGTATACAGCAAGGAGGGCTTAGA 498513 36 100.0 30 .................................... AAATTGTCTTCATTTTTCCCCTCCTAGTTT 498579 36 100.0 30 .................................... TAATAAAACAACGTTATTGTAAGGCCCGCT 498645 36 100.0 30 .................................... TAAGAGTGAAGCCGTTTGGTACTACATAGA 498711 36 100.0 30 .................................... TAAACCATTTTTATCCCTCCTTTGGAATCT 498777 36 100.0 30 .................................... CCACAAGACTTTCAAAAAGCTCAACCAAAA 498843 36 100.0 30 .................................... AAACAATTTGATCATCGGTTACTCGTTCTT 498909 36 100.0 30 .................................... AAACTGTCGTTCACCTGAAAAAATGAAATA 498975 36 100.0 30 .................................... GACTGAAATCCCAGAACGCACCATTCAAAA 499041 35 77.8 0 .........T...C.......A.A..T...-...TG | T [499067] ========== ====== ====== ====== ==================================== =============================== ================== 67 36 99.6 30 GTTTTTGTACTCTTAAAGATTCAGTAACGGTAAAAC # Left flank : ATGACTTGGTTATGGATCAGTAATCCAAATGCATTTATGAGTAAAAAGATTTTTTCTGACTTTTTAGAAAAATTGAGAGCCTGTGCGATGGAGAACCGGTTACTTAAGATATTTATTCTAAGTGAGGATTATCTGGAATTAAAGTATAAAGAAAATGACTTAGAAGCGACAGTCTTAATGTATGAGGATTATCAACAGGTTCCTACGTTTAAAATTTTTAGAGAGTCAATTGAACGTCATTATCCGGATGAATTGAATCAATCAGATGAGAAAATCATCTCGCAGCTCTTCCGAGTATTTCCATATATCGGAAAATTTAAGGAAGAGAGGGAAAGTATTTATCTGCGGGATAAAGATGTAGTATTATTAAAAGTAGTTGATGAGTTATTAGGATTTGAGTATGAATTGAATATGCAAAAAGATTATTCCGATTTAACCATACTTGAAGAGCAATATCTCATGGATGAATAGAAAACCAAAATTGAAGACGTTCATTTGAG # Right flank : GACTTTTCTATTTTTGGTCTAGTCGGTAGTACCAATTTGAAACCGGGCTTTTTCAGTAAAATACTAATAAAAGAAAAAATTTCGAGAATTAGGGTTGAGCAAGTAACCAGAATGTGCAAAAAACTCCGTCTACTTATCAATAGTAGACGGAGTTTTTGGTTGGCTTATTTTTTTAGATCGACGACATTATCAAGGACTGGTGTGTCAGGTCTTTCATAGTGGAAATTCGAAGTATCGTATTTGAAATTGTATTTGTTACCTAAGAAATATTTCGCGATATGGAGTGTACGGTCGCTGGAGCGTTCTAAATTGGAACTAATGTCGATCAGTAAGACACCGTCTGCGGCCCGTCCTTCACCTTTGGTCATAAGCTTAATGTATTTTTGGCGTAATAGTTCTACCAATTGATTGATTTCTTCTTCACGATAAAGCATTTTTTGTGCTAGATCGATGTCGTCATTTTCTAAGACTTGCAAGGCGTCGTGAATATTTTTTAATAC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTTAAAGATTCAGTAACGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //