Array 1 273473-274660 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYGP01000001.1 Escherichia coli strain 500193, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 273473 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 273534 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 273595 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 273656 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 273717 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 273778 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 273839 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 273900 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 273961 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 274022 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 274083 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 274144 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 274205 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 274266 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 274327 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 274388 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 274449 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 274510 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 274571 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 274632 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATGGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 300359-301301 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYGP01000001.1 Escherichia coli strain 500193, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 300359 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 300420 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 300481 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 300542 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 300603 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 300664 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 300725 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 300786 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 300847 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 300908 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 300969 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 301029 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 301090 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 301151 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 301212 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 301273 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //