Array 1 871223-872424 **** Predicted by CRISPRDetect 2.4 *** >NC_020125.1 Riemerella anatipestifer RA-CH-2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 871223 47 100.0 30 ............................................... ACGCTGGGTCCCATCAAGGTCATACGTGGC 871300 47 100.0 30 ............................................... AGTTTTTCTAAATCCTTAAATATTTTATCT 871377 47 100.0 30 ............................................... ATCCAAAACGATTTACAGCAGATTGCGAGT 871454 47 100.0 30 ............................................... GCGATTCCGGTTCAGGCCAGCACCTGGAGA 871531 47 100.0 30 ............................................... TAGTATTGGGATGTGTTATTTAAAAAGTGT 871608 47 100.0 30 ............................................... TTTCGGTTGCTATCCGAAACGATTCGGATC 871685 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 871762 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 871839 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 871916 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 871993 47 95.7 30 ........T...............G...................... TAATGGAGATTATAATATCCAGATACAAAC 872070 47 95.7 30 ........T...............G...................... TCTATCGAAGTGTTTAAAAACACTTGATTT 872147 47 95.7 30 ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 872224 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 872301 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 872378 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 16 47 98.0 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : TATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,4.87 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 2 2162337-2164401 **** Predicted by CRISPRDetect 2.4 *** >NC_020125.1 Riemerella anatipestifer RA-CH-2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 2162337 36 97.2 30 ................T................... TAAAAAATAGAATAAGAAATATTCCTATCA 2162403 36 97.2 30 ................G................... CATTTCAGAGTTGCAGATTAAATTGGTTGA 2162469 36 94.4 30 .......T........G................... TTTAGCTTCATTCTCTGTACCTTTTAGAAT 2162535 36 97.2 30 ................T................... AAAGGCTTATCGCCTCTATATTTTCAAAAT 2162601 36 97.2 30 ................T................... CTGTTGTTGTAAATATAATAGGTCCTATTG 2162667 36 97.2 30 ................T................... CCTTTTCCTCATCACCTTCGTAGATGCAGA 2162733 36 97.2 30 ................T................... TTCATTTATACTTCTAGGTAACTTAGTTAA 2162799 36 100.0 30 .................................... AAAGGAACGCTACTCGTTGTAGGAAGCACA 2162865 36 100.0 30 .................................... GGAGCCACCAAGATATCCCAAGGGTTCGTC 2162931 36 100.0 30 .................................... TAAGATTTCTGGATTTTCGTATATGTTGCT 2162997 36 100.0 30 .................................... TGCTTTGTTCTTCTCCTTCTTTTGTTGCCG 2163063 36 100.0 30 .................................... AGCCACAGCGTTTGATGGTTCTACTGCTAT 2163129 36 100.0 80 .................................... AGATCATGAAAACATTCAATTCTACCTTCCGTTGGGACTGCTCTCATTTTAGCTCACAGCTTTGTTGTAGTTTCAGCGGA 2163245 35 86.1 80 ....T..A....AG..-................... GAGTTAAACAATGGCGTATTATTCGTCCAAGTTGGGACTGCTCTCATTTTAGCTCACAGCTTCGTTGTATTTTCAGCGGA C,A [2163248,2163257] 2163362 35 83.3 81 ....T..A....AA..-...........C....... TTTTTTCACGAGTATCTGCTAAGTCTGATTGTTGGGACTGCTCTCAGTTTAGCTCACAACTTTGTTGTCGTTTTCAGCAGA C,G [2163365,2163374] 2163480 35 86.1 81 ....T..A....AA..-................... TTTATTTTGGTATTTTAAGTTGTTGTGAGTGTTGGGACTGCTCTCAGTTTAGCTCACAAGCTTTGTTGTTGTTTCAGCGGA C,A [2163483,2163492] 2163598 35 83.3 82 ....T..A....AG..-.............A..... ATATTAAGGCTACAGCACAAAACACAGAAAGTTGGGACTGCTCTCAGTTTAGCTCACAGCTTTGTTGTAAGTTTTCAGCGGA C,G [2163601,2163610] 2163717 35 83.3 79 ....T..A....AA..-...........C....... CCGTTTAGTTTACCGTCATCTGCTAGGTCTGTTGGGACTACTCTCATTTTACTCACAGCTTCGTTATATTTTCAGCGGA C,G [2163720,2163729] 2163833 35 86.1 79 ....T..A.A..-.A..................... GCCGATTAAGTCCAGCTAATCGCCCTCGAAGTTGGGACTGCTCTCATTTTACTCACGACTTTGTTGTTGTTTCAGCGGA C,G,A [2163836,2163850,2163852] 2163950 35 83.3 79 ....T..A....AA..-...........C....... ATTTCCTATACTTTCTTGCATTGCTGTTGTGTTGGGACTGCTCTCATTTTAGCTCACGCTTCGTTATATTTTCAGCGGA C,G [2163953,2163962] 2164066 35 86.1 79 ....T..A.A..-.A..................... GCCGATTAAGTCCAGCTAATCGCCCTCGAAGTTGGGACTGCTCTCATTTTACTCACGACTTTGTTGTTGTTTCAGCGGA C,G,A [2164069,2164083,2164085] 2164183 35 83.3 80 ....T..A....AA..-...........C....... ATTTCCTATACTTTCTTGCATTGCTGTTGTGTTGGGACTGCTCTCATTTTAGCTCACGCTTCGTTATATTTTCAGCGGAG C,G [2164186,2164195] 2164300 35 83.3 30 T...T..A....AG..-................... AATTTCTCATATCGTTATTATTTTACTAGT A [2164310] 2164366 36 88.9 0 ...........CA...T.C................. | ========== ====== ====== ====== ==================================== ================================================================================== ================== 24 36 92.1 52 GTTGGGACTGCTCTCACTTTGAAGGGTATTCACAAC # Left flank : TACCGTCTGCTGGCGTATATGACCGACCAAGACAACCCCAAAAACCTCTTAAAATGGGAAGTTCCCAAAGGGCAAAAGGATAAAATTCATTATATTAACCGAGCCAATGCCCAAGCCTTTCTAAGGGAGCTCCCAGAACTATTTTATGGGGAGGGCTGTGGGCTCTTCTTATCTGAGGAAGTCACCAAAAAGTTTTTTGAGTACCGTAGTATCGTTCATAAGCTCCTACTTGCAGAGCAAAACAGCACCGAGGCGGAGTTCCGACTAAAAAACGAAGAGGCGGCTACCAGAATGAAGGTGCTGCATCATAAGTTGAGCCAAAGCATTAGGCAATGCCTAAAAATAGAACAACGCGATTTAAAAGCGTTGTAAAGAAAAGCGTTCTTTGAAACATCGAGATAAAACAAGCACCCAAAAAAGACAATACCCTATCATAACAATAATGCACAGCATTTGAAGGGTATTCACAACACCAATAAATACAGCTTATTTGCTCCTAA # Right flank : CACCTAAGGGCATAAAAAAATCCCTGCTCTGTACGGTACAGAGCAGGGATTTTGCTTCCTATTTATTCTATTACAGAAAATACCTCACTTCCTTAGTACAGGCGAAGTCGGTTCCCTCGTACGAGGGAAGGCTCTTCTCCTTACCGAGAGAAGAGCCTTCGCCTTAGGCAGTGAAGTGTCTTCCTCTTATAAAGCGACCGCCCTTCCTTAGCATTAAGGAAGGGCGGTCTTTATTTAGAAGTGCCAAAAACACACTACACAATAGTAATAGGCGTGCTTAGTGTTTCGGTTCGGGGTTCTTTCAGTAAGGTAGTGCCTTTACTGCTTTGCGTGGTGATGCTGAGTTCATAGTTACCCGCTTCTAAATCTGTAGGAACGAGAATGAGTAACCTTGACGGCTCATTAAGGACAATATGCTCTGCTGAGAGTTTCACTTCTTGCTGAGTGTCTAAGTTTTTAAAGACAATACCGTTTTTAGGGTTGTCCCCATCTATTTTAAT # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-1.45, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGACTGCTCTCACTTTGAAGGGTATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-66] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //