Array 1 2522561-2523521 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032321.1 Azospirillum brasilense strain MTCC4035 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================ ================== 2522561 32 100.0 33 ................................ CAGCGAACTGGCTATTCCAAATCTTCGACCGCC 2522626 32 100.0 35 ................................ ACCAACGCCGCGAACAACGTCCTCAACATCGTCAG 2522693 32 100.0 31 ................................ GACGGTCGCGCCCATCGTTGTGGTCCACGGT 2522756 32 100.0 36 ................................ GGCAGGAGGCCCTTGAAGCATTGCTAGCCCGCGAAC 2522824 32 100.0 32 ................................ TCTCCAGGATCGTATTCGCAGCGCCCGCCAGT 2522888 32 100.0 44 ................................ CTGCTCAAGACGGATCGCACTGGCCTGTCGCCTGACCGCCGAGA 2522964 32 100.0 32 ................................ GCTTGAGCTTGCTCTCCGGCCGACGCAAGGTG 2523028 32 100.0 35 ................................ CTTCTGCAGGTCAAGATCCTGCTGCGCGATGTCCT 2523095 32 100.0 33 ................................ AGCTCGCTGAAGATGACATACTGATCCAGGAAG 2523160 32 100.0 32 ................................ ACCACGGGCAGCTACCGCGAATACCAGAACAG 2523224 32 100.0 34 ................................ GCGGTGGATCTTCGCGCGCCACAGCGGATCGAAC 2523290 32 100.0 34 ................................ TGAATGAAAACGAAGTGGTTCCGGGTCGCCACCA 2523356 32 100.0 36 ................................ CAGCTCCGCGGCAAGCCGGCCACCTACACGCCCACC 2523424 32 100.0 34 ................................ GGTCCAGACGCGCAGGCCGCCGCTCTCATGCCCC 2523490 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ============================================ ================== 15 32 100.0 34 GTCGCCTCCTGCGCGGAGGCGTGGATTGAAAC # Left flank : TTCCTCTGGCGGTGACGCGGTGCTCGTCCTGGTCTGCTATGATGTCTCCACGGAAACCCCGGCCGGCCGTCGCCGCTTGCGCCGTGTGGCAAGGGCTTGCCAGGACCACGGCGTGCGGGTTCAATATTCAGTGTTCGAATGCACGGTCGATCCCGCACAGTGGACCGCGCTGCGCGCATCCCTGCTCGGCTTGATCGAGCCGCGGACCGATAGTCTGCGCTTCTATCTTCTTGGCTCGTCGGCGCGGCACAAAGTGGAGCATGTCGGCGCTCGCACACCGACCGATCTCGATGGGCCTCTAATTCTGTAATTGTCAGCGCCTGTGCGAACCCCAAGCTCCCATGCATGCTCCGGGAGGATTCGCGCTCCAGAAAAGTCAAGGCTTCTGAATGCCTTGACACCTACGCTGGCAATGCGAGACGGACGCTCTTCCATCAATCACATTCGTTCGCATATTGGTTGCCGTTTTGCATGTACAGCCAATAGCTTATACTATGGCG # Right flank : CCCCACGCTCGTTATCATTGAGTTGGCTTTGTCGCGTTGTCAAACGACTTCAGAAACTGGACCGGGGACGACACGAGGAACTGGACCCTCGTACGTCATAGTGTGTTTTCGGTGACCGCCGGGGCCGGGTTCGTCTTGAGCAGGCCGGCCCGCCGCTTCTCGCGCAGCCGGTAGCTGTCGCCGCGGATGGTGATGACGTGGCTGTGGTGAAGCAGCCGGTCGAGAATGGCGGTGGCCATCACCGGATCGCCGAACACCGTTCCCCACTCGCTGACCGAACGGTTGCTGGTCACCAGCATGGAACCGCGCTCATAGCGGCGCGACACCAGCTGGAAGAACAGGTGTGCGGCATTGGGCTCGAAGGGCAGGTAGCCGATCTCATCGACGATCAGCAGCTTGGCTTTGGCGTAGTGGGCCAGCTTGTCCTCCAGCCGCCCCTCGATGTGCGCCCGGGCGAGCGCGATGATCAGCTCGGTCGCCTGCACGTACAGCACCGGGTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCTGCGCGGAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 141128-140855 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032326.1 Azospirillum brasilense strain MTCC4035 plasmid p5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 141127 29 100.0 32 ............................. CCCGACGACGATCAGTTTGGATGGCGAGGTCC 141066 29 100.0 32 ............................. CAGTCGGCGATCAACGGCTCCGGCGCCCCGAG 141005 29 96.6 32 .........................C... CCCAAGCAGGACATCGAGGCCGAGGCCGCCGA 140944 29 96.6 32 ....T........................ GGGACCGGGGAACGTAAGATTCAATGGGTCCA 140883 29 79.3 0 ..............C...A......CTTT | ========== ====== ====== ====== ============================= ================================ ================== 5 29 94.5 32 GGTTCCCCCGCACCTGCGGGGATAGACCC # Left flank : ACCGTCTCGTCCGCCGCCGCGCCGCTCGGTTTTTCCGTCAGAAGGCCGTGATTCCGTCGATGATCGACCGGATCAAGACGCTTCTACGGCTCTCCAAGGCAGAGGGCGGGGATGACGTCCAGAACGGTGGTGGGGAGACGGGGTGATGCCCATGGTCGTCGTCATCACGCGCGATGTCGAAGACCGATATCGCGGGTTTCTGGGATCGGTGATGCTGGAACTTGCTCCCGGCGTCTACGCTCACCCACGCATGAGCGCCGGCGTGCGCGGTCGTGTCTGGACGGTGCTGTCGGACTGGCACGACTCACTGAGCCGGGGAGCCATCGTGATGACGTGGGCCGACCGCGCCGCCGACGGTGGTCTCGGCCTCGCCAGCCTGGGCAACCCACCCAAGGACATCGTTACGCATGATGCTTTCCTCCTCGTCCGACGCCCGCTGCGGCGAAGCTGACGACTGGTTCTTTGACAATGTGAACGAAGTCAGTATGTTAGTGGGCAGA # Right flank : CTAAGGCAGCGCGAAATACGAAAAGCCCGAGGTCCCCCCACACCCTTCAACACCGAAGTCGCCTAAGACGGTGATGGGGTTTGACCATCTCCCCAAGTTTCCTCCGCCAGAATACGGATGCTGTTTGATACCCTGAAAGGGCCTGATCGACACGCTGCGATGTGATCTCGCGTGTCTACCGCACGCAGTTGCCGACGATCTGGTAACAGAGGGTGGCGTCGCGGTTCTGGTTGTAGCGGACCTCGACGATGCGGTCCTCACGAAGCACGACCGTGGCCTCGCACCGGTAGGTCCGGACATAGGTCGTTACATCGGGCTCCCAGAGGAGCGGTCTCCGCGGTCCCAGCCATGGATTGGGCTCCCAATCGACATCGCGGTCGATGGGGGTCTGTTGCCGGGTGTAGACCATGAACTCGGCGTCGCCGGCGGCGGTCATGCGTTCCGGTACGCCGGCGCACGCCAGGAGATCCCCCTTGCTCATGCCGACCATCGCCGTTGGG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCACCTGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 150341-150068 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032326.1 Azospirillum brasilense strain MTCC4035 plasmid p5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 150340 29 100.0 32 ............................. CGTTTGGCTTCGCCGGGTATCCCCCTGGTAGC 150279 29 100.0 32 ............................. GGGCAGCGCTCTATGCGGGTGGCGCCTTCCCA 150218 29 100.0 32 ............................. GTTCGCCTTCCCGCGAAAGGTGACCTCGCAAA 150157 29 100.0 32 ............................. CTTGCCTATTACCTGAAGGAGCGTCTGAACAA 150096 29 93.1 0 ........T.............C...... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GGTTCCCCCGCAGGTGCGGGGATAGACCC # Left flank : GTCATTGCTGCGTCGTAGGTCGTGCATGATCCGGGTCGGCAAGGTCCCATTCTTCATGGCAGCCTCTCAAATTGACAACTGCAGCGAAAAAACAAGCATTATCAGTTATATAATATTTAGGCCCGGACTGTCCAGATCTCACTCGTGGGAGCCTGTCGTGAACTGGTCAGTGCTCGCGGCCGCGAGCACGATCCTGCTCGGCTGCACCCTGGCGCTCTGCATGCGGCTGTGCGGAAGGGTGCTCAGGGCTCCGTGCAACGCACCGGGTTTCCCGGAGGCCCCGTTTCTTGAGCGGCTGGCATGACGCGCTGTGCCGGGGCGCTGTCATGATGAGCTGTCCGATAAGATCGCTGATGGCGGTCTTGGCCTTGCGTGTTTTGGCGCTCCGCCTGAAGATGTCGTCACGCACGACGCCTTCCTTCTCGTCCGACACCCACTGCGGCGGCGATGACGACTGGTTCTTTGACAATGTGAACAGAGTCAGTATCTTACTTGGCAGA # Right flank : CTGCGTTGCCAGGCGGTACCATCGGCGGCCCGAGGCAAGCGCCAGTCATCTCACAGCCTGCAGATGTGCTGCGGAACGGGTCTTCGCACGTTGCTATCATGGCAGTTGAAGTGTGATGATGCTTTGTCGCTTCCTGATAGGCATGTCGCCGTGCATGAACAAAAAAGGGCCAATTATCTGAGCCCCTGGGGAAAGCATGGCGATCAACCTGACGATTGCCATCATCTCGCGCATCACTGCGCCGACGTCGCCGCATGCTTCGAAGCCATCATCGCGCTTCCCGTGGTCCGCGCGCGGATTGAGACGGCCGGAGGCGCTCCGCTTTCGCCGTGCGATCGCGCGCGTTTGGCGGCGATCGCTTTTCTCCATGACGTCGGAAAATTGCATCCGGGCTTCCAGGCCAAGGGCTGGTCGGCCGATGACCGGTCTCGACACCATCCGCTGACGCTGCACGGCCATCTTGCGGAAGGGATGGCGCTGCTGATGCGGCAGGGTCCGAT # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCAGGTGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 89552-88546 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032328.1 Azospirillum brasilense strain MTCC4035 plasmid p7, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 89551 29 100.0 32 ............................. ATTTCACCGAAGACGATCCAGGGAAAACGTCA 89490 29 100.0 32 ............................. ACCCGCAAGTGGATCAAGATCCGCAGCGTGGG 89429 29 100.0 32 ............................. GCTTGGTAAGAGCAGCACCCCGACGCCGGCCG 89368 29 100.0 32 ............................. AGGACCGTTGCCTGTCGGAACCGGCGGTCCAA 89307 29 100.0 32 ............................. GCAGGCCGCCCAGCAGCGCGCCGCCACCGCTC 89246 29 100.0 32 ............................. CTGACCAGCGGGTGATCTTTCCCGTTGACACC 89185 29 100.0 32 ............................. GCGGACGCCACCAAAATTGAAGACCTACCAGA 89124 29 100.0 32 ............................. CACCTACGCCCGGAACTGCATGAGCAAAACCA 89063 29 100.0 32 ............................. GCCCAGCGCGGCGTCGATACGTGGCAAATCTC 89002 29 96.6 32 ...C......................... CAGGAGGCCACGGAGCGCCGGGCACGCAAGGC 88941 29 100.0 32 ............................. ACCTCCTTTGCGTTCTTTTCGGCGGCGATGAA 88880 29 100.0 33 ............................. CAAGGGCGGATCAACACCGCCGGCCCCGGCATC 88818 29 96.6 32 ..............C.............. GAACCAGCCGCGGTGATGCGCCGCATCTTCGC 88757 29 96.6 32 ..............C.............. AAAGAGCGTTATGAACCGTATGTCTACCAGTG 88696 29 93.1 32 ...........A..C.............. TGCCACGCGGCGTCAAGGGTATTCCCGTTCTT 88635 29 93.1 31 ...........A.........A....... GTCTACGACCGCGACAAGGACGGCAAGGAGG 88575 29 82.8 0 ...........AC.C........T....A | T [88569] ========== ====== ====== ====== ============================= ================================= ================== 17 29 97.6 32 CCCTTCCCCGCGTGTGCGGGGGTGAACCG # Left flank : ATCGTGCCCCTCATCGAAGACGTGCTTTCCATCGATGGGGTCCAGCCTCCATCGCCGCCATCGGAGGCGTTGCCAATCGTGATTGCAAACAAGGAGCAGAGTGGCGATGCTGGTCATCGTTCTTGAGGCAGCTCCTCCACGGTTGCGAGGTCGCCTGACCCTTTGGCTGCTTGAAGTTCGTGCCGGCGTTTATGTCGGCCGGGCGTCGCCACGCCTGCGAGACCGACTCTGGGATGAAATCGTAGGCAATATCGACGGCGGGAATGCGGTGCTCGTCGAGGCCAACTCCACTCTCGAGGCTGGCTTCACGTTTCGTACGGCAGGCCATGCCCGCCGCATGCCCGTGGACAGCGATGGCTTTTCCCTGGTGGCCTTTCATCCGGAAGAAGGGTGAGAAGGCTGGTTTTTGGACATTGTAAAGACTGCAGCAATTGCGGGAAGAAGTTGGTAGACTTCTCGCAAAGCGATTTCCCATGTTCTACCAGTGCCTTCCAGCCATA # Right flank : TAGGTCGGGGTGACCTATCCCAGGAAGCCGCGCCTATTCCCATCCTTGCTGGGTGAACCGACGCCACCCATACCAACGAAGCGCTCGATCACCCCAGCATTAAGATCATTATTCGAATTCGAGACGTCAATTACGTTTCACTTATTATTTTAAAATTCTGATCCGGTCTATCGTTGATTGCAGTAAATCCCCACCGTACAGTCTTCTTATCCCTTTGTTAGATCTCAACCCGGCATCCGTTTCGCGATGCCGGGCACACCCCGTTCTTGCCCTCATGGGGACCCCGCATGTCCGTCTCTGCCCAGGCGCGCGCGCCGCAGCTCGCCGACCTCACTGCCCAGATCGGTGCCGGCACCAAAATTTCCCCGCAATTCCTGATCGGCATCGCCAACCAGCACTTCGGCGGCACCATGGCCGCAGGCACCTACACGACGGCGGACGCCTACGACCTTGCGGAACAGGCGCTCAACAGGCTGATCCTGGAACGCCGCGTCATGCTG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTCCCCGCGTGTGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 98896-99656 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032328.1 Azospirillum brasilense strain MTCC4035 plasmid p7, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 98896 29 100.0 32 ............................. CAAGCTCACCGGGTCGTCGCGGCGCGCAAGCG 98957 29 100.0 32 ............................. CAGTCATCAACGATCATCCGCGGCGGCCAAAC 99018 29 100.0 32 ............................. GACAACATCGTTGGTTCGATGTTCACGCTGAA 99079 29 100.0 32 ............................. TCGGCGAGGTTCATTGCGTTGATCCGGTCGGC 99140 29 100.0 32 ............................. CTCGCCGTCACGCAACGCCGACAGACGAGGCC 99201 29 100.0 32 ............................. CCTCTGTTCCAGTCACCGCCAGACGCGGCCCG 99262 29 100.0 32 ............................. TTAGCTCCCATGGCAACCGCCATCGCGCGAGT 99323 29 96.6 32 ........T.................... GAAGTCAGGTCGGCAAGCCCGAGCTATCAATG 99384 29 100.0 32 ............................. GGTGTCTCCTCAGGCCGCGGGCGTGGCGGGAG 99445 29 100.0 32 ............................. GCTCACGCCTCCTGTCCGGTGGCCGCGGCAAT 99506 29 93.1 32 ..C.........C................ CTTTTCGAGCTGGTCGACAGCCCGAGCAACCG 99567 29 93.1 32 ..C.........C................ ACTTGGTCGATAAAAGTACCTTTCTCATAAAG 99628 29 86.2 0 ..C.....T..............T...T. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.6 32 CCTTTCCCCGCATGCGCGGGGGTGAACCG # Left flank : GGTCTTCCGGATGCATGCGGCTTTCGTCCCGACGGGTCACAGGGACTGTCCCGCATGGCCTTTCAGAAGATGTTGTGGAGGCGATCGCCAGCCGAGCTGGCCATGCGGAGATCGTTCTCATTTCTCTCGATCCGACCCACGCTGTCTGGCGCGGGGGTCTCCAAAGCGGCGACAAGATTGTCCCGTTTACCGTCGATGGTTTCTACGGGCTTGAATGGAGATAACTTTGCTCATTGCCAGTAGGTGTTGGTGGAAAACGGTTGCCCGTTCATGGGCGCCATCACAGTGCATGAAGGAAGGGAATGCCTCTGCACGCCGTAGGAAGGAGGCATCAGCAACATTCGGATTGACAACCAGCCCTCCCGCTGGTGCCCTTCCCTCGAAAGTTGGCTGAATATGCGGCGTCTTGAGCATCGTGAAGACTGCATCGAATGCGGGAAGAAGTTGGTAGACTTCCCGCAAAACGAATTTGCTCATGTTCGCAATGGCTTCCAGACATA # Right flank : GGCGCTCGACCAGCGCCAAGGCTGCGGCCTCCACGGCGGGATCTGGGGCGGCTTATCCTGCAATTCCAACAGCGGTGGCGAACGCCTCATCCGGCACGTCAAAGAAGCCCTGCGCGCCGCGCCACGGAACCGGCTCCGGAAGGGCGCGGACCTCTCCCAACTCCCAAGCCCAGCGGCCCGGGGAGAAGTCGCCGAAGTGGCCCCATTCTGCCATCGGTCGGGATTCCGTCCGGTGTGCGGCGACCAGCACGGCGGTGCCGAGCAGGCAGCCGCGCGGGATGTCGACCAGCTTCTCGAAGCGCCGACGCAGCGCGACACGGAACGCTTCGTCACAGGCCAGTTCAGGCCCCCCGGCGTCCCGGTCGCGGAGATAGTCCTGCAAGCCTTCCAGGTCCGCTGTGTTCTTCGCGGCGTGGATGCCGATGCGCTGGCCGATCAGCCGGGTCGGCGGCGCCCAATGGCGCGTCTCGTGCAGCTTGAAGGGGCGCCCGGTGGTGGGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTTCCCCGCATGCGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //