Array 1 761143-760275 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042242.1 Oxalobacter formigenes strain SSYG-15 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 761142 28 100.0 32 ............................ AAAAGGGTCTTTCTGGATGATGAAACGATTAA 761082 28 100.0 32 ............................ CCGGTGAAGACACTGAGAACAAGCAGCCTGTT 761022 28 100.0 32 ............................ GAAGGAGGCGGTTGAAGATCAGCCGTGGCATC 760962 28 100.0 32 ............................ AGCTTCGCCAGAAGTTTTAGCCCTTCTCAAAC 760902 28 100.0 32 ............................ GTCAATCGCTGCTGTTGAACTTTTTGCATTGG 760842 28 100.0 32 ............................ GAATGCATCGGCAGCCGCCCGGATCTCTCCGC 760782 28 100.0 32 ............................ AAAAGAACTGAGGCGTGAACCATGACATTAAA 760722 28 100.0 32 ............................ TTGTCATAAAATACTATTCCTTTATCGAGACT 760662 28 100.0 32 ............................ TGATTTGCGCCGCCGGGAATGCCCGACAATAA 760602 28 100.0 32 ............................ ATCGCCTGAACCTGTTTCTAAAGAGAAGAAAT 760542 28 100.0 32 ............................ ACGCATCGCCGGACACCCGCGCATTTCCGTAC 760482 28 100.0 32 ............................ TTGAAGATATCGACCAATGTCGAGGTGTTCTC 760422 28 100.0 32 ............................ ATTCTGGAAGAATTGATCAGAAGATTTGTACG 760362 28 96.4 32 ...................A........ ATCATGGCACCTTTTTGTTAGTCATAATCGCC 760302 28 85.7 0 ............AC.........G...A | ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.8 32 GTGAACCACCGTGTAGGTGGCTTAGAAG # Left flank : CCCGCTGGGCCAGAACTTTGTACGCCTTGCTGGCACAGGGTTTCAAAATCGAATTCAGCCGCAAGGAAGGCGAACGAAAAAACGACACCCTCGCCGATATCGTCAATGGATACCTCGATCACGGCAACTACATCGCCTACGGCTATGCTTCCGTTGCCCTGTGCGGCATGGGCATCAGCTTCTCACTTCCCCTTCTCCACGGAAAAACCCGCCGGGGCGCCCTCGTCTTCGACATCGCCGACCTGATCAAGGACGCCTGCGTCATGCCACTGGCCTTTCTCAGTGCCAAACGGGGCGACAACCAGAAAGATTTCCGAAATTCCCTGATTGAATACTGTCAGGACAAGGAAGTGCTTGACCTTCTTTTTACCTTCATTTCTGAGGCATGCAATAAAGTCGTTTAAAATCAACTACTTGAAAATTCATGAAAAAACGAAGGTCAAACGGTGAAAAAGGAGACAAGTCAATAATAAACAAGGATTTTTTCAAAAAATTGTCTA # Right flank : CGTTAATAGGACGAATAAAGAAACTTCGCTGGATGAACCATTCAGCAAATAGCAAGTGCCATGTATATTTTATAAAATATTCATTCGGTTTTCCTGAATGGAACGAACTCCCGTTAACTGATAAACTTGCCATCCGGAATGTCTGACCTGTACAAAAACGGTCGCCTCTTCAAGCTATGCTATGGGAAAATTGATCATTAAAGCGGCGTTGTCCGTTTTCATCTGTTGCCTGATATACGAATTCTTCGATATCGGCACAGGTATCCCCTTTTATTCGGGCATTGCAGCGATCATCTGCCTGCAGCCGGAAATCAAAAGCACCTTCCGGATCGGCATGAACCGGACGATCGGTACCTTGATCGGCGGTTTTACGGGAATGGCGATCCTCTTCATTCTGCGGGAATTCTCCCTGTTTTCCTTTCCGACCCTTAAAAACTTCCTGATTTCCCTGTGCATCATTCCCCTGATGTTTCTGGCCGAATCCTTCAAAAGAGGCCCTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACCACCGTGTAGGTGGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGAACCACCGTGTAGGTGGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 770237-769549 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042242.1 Oxalobacter formigenes strain SSYG-15 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 770236 28 100.0 32 ............................ AGGCCGCGCAGTAGTGAAATAATCTTTTTCCC 770176 28 100.0 32 ............................ GGTAGGGTAGAGGTAGCCCATATTCATCGACT 770116 28 100.0 32 ............................ TTCTTCCAGCAATTCAAGTGTATCGATATCAA 770056 28 100.0 32 ............................ ATCAAGGAAATGGCGAAAATCGTTTTTCGCAC 769996 28 100.0 32 ............................ CGAATAACCAGATAGGACAAGACCATCATGTC 769936 28 100.0 32 ............................ ACACCGCAAGATTATCTATCTTATGTAATACC 769876 28 100.0 32 ............................ GGAATACGATTCATCGCTACCCGAAAGAAATC 769816 28 96.4 32 .............C.............. TGCTGCCAGTTCCGTTTCTTCATTACGTTTCG 769756 28 96.4 32 .............C.............. GAAAGCCGTATGCGTTGGTTCGCTTGTGTCTC 769696 28 96.4 32 .............C.............. AAATACATACCAGCAACAGGCAATGAGATACA 769636 28 85.7 32 ....C......A.C......C....... GGTAGCTGACGGTGTTTAGCTCCTTCCCGCAT 769576 28 78.6 0 ...........CAC......C..GT... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 96.1 32 GTGATCCACCGTGTAGGTGGTTTAGAAG # Left flank : AATACTGGGCACGCCGGAAAACCATTACGACATCATCTTCATGGACATCCAGATGCCCGTCATGAACGGCCACGAGGCGAGCCGTGCCATCCGTGACCTTGCCAGAGCTGACACTGCCAGAATCCCCATCATCGCCCTGACTGCCAACGCCTTCATCGAAGACATTGCCAAATCCACCCGGGCGGGAATGACCGGCCACATCGCCAAACCGCTCGACCCCGACAAAATATACGAAGTCATGAATCAGGTGCTTTGAAAACAGCTGTATAAAACATCGCACCAGACTTCAGTCCGTTCAAGCAGAAAATTCTCTGCCTTATCCATCTATCAAACGATAAAACCGTATACCTTCATCTCATCTTGACTGACCTTCAAAAATGCACCCCATTAAAAAAGTTATAAAAAACAATGAGTTGAAAATTTGTAAAAAAACGAAGGTCAAAGCAGTCCAATTCGCTTAAAATACTGAATAAACAAGTAGTTATCAAATTATTTGTCTA # Right flank : CTCAAATTTCTTTTCAAGAATTGCCCTGGCAAGGTGATCCACCGTAAGTGGCTCAGAATTTCGGCATTGCATACGTTTATGCCGAATGTTAGTGATCCCCTGTGCAGCTGGCTTTCGCAATGAAACTGAATGAATTTATAAAAAAACGTATTCTGCTGATAAATTTCCACAATCAATCTTTCATTGCCCGTCTGTTTTCTCCAACAAAAAAACACATTTACACGTAAATATCTGTTTTTTCTTTCCCGCAAGCAATGAACCCGAATGTGTCATTTTATAATGAACCTGTCTCGGCAGTTTCATCAACCAATCGGATGTAAACGATACCGGTTTTCAAACCGGCCTGAACTGGACGACATATGCACATTCTGCTTGTCTCGGCATGTGAAAAAAGGGCTATCAAAAAAACAAGGGCCCTGCTGGACAGTTATGCGCTGCGTGTCGGTGAAAAAACATGGTCGACCCCGATCACGCAGGAAGCCCTGACCGAACTCCGTACG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCCACCGTGTAGGTGGTTTAGAAG # Alternate repeat : GTGATCCACCGTGCAGGTGGTTTAGAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGATCCACCGTGTAGGTGGTTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 828437-827689 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042242.1 Oxalobacter formigenes strain SSYG-15 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 828436 28 100.0 32 ............................ TAGCTGGCATTGCGGAAAGGCTTAACAAGATC 828376 28 100.0 32 ............................ CGGTTCGACCGGGCTGATGCAAACCTGACATT 828316 28 100.0 32 ............................ GTCAAGAGTATTAGAATAAGTACTGCGGAACT 828256 28 100.0 32 ............................ AGTACAACGAAACTGGCAAAAGAGTTCCCGTT 828196 28 100.0 32 ............................ TGATCCGTAAAAAGGGCGGCATAAATAATGGT 828136 28 100.0 32 ............................ ACGCGGATAGATTGCATGAATCAGCTTCACAT 828076 28 100.0 32 ............................ TGAAACCGGTGAAATTATTCAATTGGTTCCTG 828016 28 100.0 32 ............................ AGATAAAATTTATTCAATTATTGGAACAACTT 827956 28 100.0 32 ............................ TGTTCAGAATGCTCTCGGTCAAGGTGTATCTT 827896 28 100.0 32 ............................ GTCTGGCCAGAATCGACAGTAAAACGGTTGTT 827836 28 100.0 32 ............................ ACAGGGCAATGTCAGGTTTGCATCAGCCCGGT 827776 28 92.9 32 .....................A.....A CAACTATATGGATCAAGTCACTGACGCATTGA 827716 28 78.6 0 ......T...A.AC...C......T... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.8 32 GTGATCCACCGTGTAGGTGGCTTAGAAG # Left flank : CGAAATCGCCGATTCCCTCTCCGACATCTACCAGAACATCATGTCGAACAAAATGAACGACATCATCCGTATACTGACCATCATCTCCACCATCCTGATGCCGCTGACCTTCATCGCCGGACTGTACGGCATGAATTTCAACGTTTCCGACTCTCCATGGAACATGCCCGAACTGCATCATCCCTACGGATATCCCATCACCCTGTTGCTGATGCTGGCCATTGCGCTCGGAATGATCTGGTTTTTCAAAAAGAAAGACTGGCTCTGAAACAGACCGTCATTTTTACACAGGCAAAACATTTCTTTTCGAACACATCTTTTTTGAAAGTGCAGTCCCTCTTCTCGAAGCAACGGGACACAAGCATTTGACCTTCGATTTTTTGAGAAAAATAAAAACCTTATAAATCAACAGGTTGACAACACTGATAAAAAACGAAGGTTCAGGCATGAAAAAACGGGAAAAATAACCATAAACAATGAGTTATACTGAAAACGCTCTA # Right flank : TCATCCCCTCATCCGGAATACGAAATTCATCCCGGCCTGCTGCAAGGGTGACATGAAAACAGACTGAATAATCAGTCATTTCCGAAAAGTGCGTACGGCAGGTTCTGTGATCTGATAAATGTATCCTGAAATTTCAGGAACCCGCTTTTTCCCATTACATGCGCGACAGCACATTTAAGGTTGAGATCCGTGATTTTTTGACCCTGTATGTTCATTCCATTTGCAAAACCTGTGTTTCGGCAGAAGGTGGCGGCACGGCAGGTTTCAGAAAATCTTTGGGAATATCACACTTTTTCTTGCCCATCATGGTCGCCAGCGCTTCTTTCTCACCCCTGACATTCGCCAGTTCTGCTGCCTCAATGCCGTCTCCCTGACCATATCCCAGCCAGAAAGCCTGAACCTGACTGGATTTCAAACGCTGCTCCTGTGCAATGACCAGCATATTCTCCCTTCTCGCCATGGATGAGGCTTCAAGGGTCAGGTCATCACAATTGTATGTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCCACCGTGTAGGTGGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGATCCACCGTGTAGGTGGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 912013-909583 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042242.1 Oxalobacter formigenes strain SSYG-15 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 912012 28 100.0 32 ............................ AGATTATTGATATCGGACTCATCTTTGAATTG 911952 28 100.0 32 ............................ AAAAGGGCAAACCAATACCAGATATAAAAAAA 911892 28 100.0 32 ............................ TTTTCTCATAATATAAATTATGCGAAATTTAT 911832 28 100.0 32 ............................ AATGATCATTCCGTGTTCAACAAACGAATGTG 911772 28 100.0 32 ............................ TTATTCGACGGCCCAAGATGTTGCGTCTGCAT 911712 28 100.0 32 ............................ TGTTTATGTCGATGAAGTTTTACCCGGTGATA 911652 28 100.0 32 ............................ TCTTAAAAAAGACTATAACACGACTTTGGTGT 911592 28 100.0 32 ............................ TTACATGACCAAAGATCAGATCAGAAGAGGGC 911532 28 100.0 32 ............................ TGTTCCATCTTCAAAGCGGATACTATCGCCGT 911472 28 100.0 32 ............................ ATAAAAAAACGGGATTTCTCCCGTTTAACTTG 911412 28 100.0 32 ............................ GATCACAGTAGCAGAAAGTTGCGAGAAACACG 911352 28 100.0 32 ............................ AAGCGACGCATATCCAAACCACTGATTACACC 911292 28 100.0 32 ............................ AAACGGATCAAGAACACTACCGACAGACTTAA 911232 28 100.0 32 ............................ AGCTGTTTTTTATTTTGGTAATATCACCATCA 911172 28 100.0 32 ............................ AGACATTACGGGTGGTCAGTCGATAACAGGAA 911112 28 100.0 32 ............................ TAATGATTATCTTATTGTGAATGGCGTTAAAA 911052 28 100.0 32 ............................ AGACAGAACATGGCTAGTTTCTCATGTCATCG 910992 28 100.0 32 ............................ TTCATCCTGAGTTGTATCGCCAGTAACATAAA 910932 28 100.0 32 ............................ GTTTGCATCAGCTGGCTTGAAAAATGAAATCC 910872 28 100.0 32 ............................ TGTCCTTTTCTGGCGATGTCTGCCAGAAAGTA 910812 28 100.0 33 ............................ CGTAAAATTTCTGATCTTTTCAAATTCGGCTTG 910751 28 100.0 32 ............................ TTTAAAGAACAACAATGGATTGCAGAGTGATC 910691 28 100.0 32 ............................ ATATGCTGCGTCTGTTGGGTCAAACGATAAAA 910631 28 100.0 32 ............................ ATTAAAACGGCCGATTTTCAGGCTATGGGCGA 910571 28 100.0 32 ............................ TGTTTAAGCCGGGCATGCGTGACGGTACCATC 910511 28 100.0 32 ............................ TTGATTTGTGTGAATGTGAGAGGTTTGACAAC 910451 28 100.0 33 ............................ TTTCCGAATCGCAGAAAGCGCAGATTGTTTCAG 910390 28 100.0 32 ............................ AAGAATGCTCATGTTGATGACTCAGATTGGTT 910330 28 100.0 32 ............................ AATTGAAGAAAAACCAAAAGGCCAGAGCGATT 910270 28 100.0 32 ............................ ATAGAGCTTGCTCTTACTTTGGAGGTGATTCT 910210 28 100.0 32 ............................ TTGAAGCATGGACTTTCCTGACCCGTTGTAAC 910150 28 100.0 32 ............................ GATTACGGAAATGAAGGATACAAAAAGGGTTT 910090 28 100.0 32 ............................ ACAGGGAACTGACCCCGCCGTCGCCATTATGC 910030 28 100.0 32 ............................ CAGTTGAACATGCGCCGGATCGGAATAAATGA 909970 28 100.0 32 ............................ AAAAGGCGGGAAAAAAGGTCAGGCACTTATCA 909910 28 100.0 32 ............................ ATTATTGAAAACATTGAAAATATGGGATATGG 909850 28 100.0 32 ............................ AGACTGCCGGGGAGGGAACACGACAGCGCTTT 909790 28 100.0 32 ............................ AAGCTAAATATTGCTCTTTGGTGACACCATGG 909730 28 96.4 32 .........T.................. CGAAGCGGGGTTTTCTCAAAAATTAAGCTGTT 909670 28 100.0 32 ............................ TCAATGATTTGCGCGAACGTTCGAAGGATCTG 909610 28 85.7 0 ................A....C.G..T. | ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAG # Left flank : CTTGCAGAAAATCGACATTCAGAAATGGTTTGTGCGTTTAAACGATTGTATCCACATTACTCCTGTTTGCAGGGTACCCCTGAACGAAATCACTGGTTATGCAACTTTCAGTCGAAAACACATTAAATCCAACGCCGAACGCCTCGCACGTCGTCAAATGAAAAGGCATAAGGATTTATCATTTCATGAAACAGTACAGCGTTATCAGAAAAACCTGGCAAAATCACCTTTGCCCTTCATACAACTTGAAAGTTTAACTAACTCTCACCCATTCAAATTATTTATTGAAAAGAAACCGGCGATAAATGCAAGCTTGAAAGTCTTTACTACTTATGGATTAAGCGCAGAATCAACGATTCCTGAATTTTAACCAAAGTTTTTTCAGATCTTTAAAAATCAAATAAAATCAACCGGTTATAAGAATATTAAAAAACTTGGGTTAAACAGTGATTTCCGGCTCAAGTTATTGTTATAACTTTATTTTTTATTTTTTATATACA # Right flank : TTTGAACTAACCGAGACGTTTTCCCTTTCCGTTCCCCTTTTTCCCTTTTTTCCCCTGTTTTTCCTTCGGCGGTACCATAGAACAGTTGACTTCCTTCCCCTCTTTTCCAAGATAGCCGGTTCCCCATTCATACATGGATTCCAGCACAGGACCGATGCTCCTGCCGAAATCGGTCAGGGAATATTCCACTTTTGGCGGGACAACCGGAAAAACCTCACGGTTGACCAGCCCGTCGGTTTCCAGTTCCCTGAGTTGCTGCGTCAGCATCTTTGGCGTGGCGCAAGGCACTTCTTTTCTGAGCTGCGAAAATCGGAGCGTACCGGAGGTCAGTTTCCATAAAATCAGCGATTTGTATTTTCCGCCGATAAGGCTGATCGTCGCCTCCACCGGACAATGCGTCTCGATGGACGTTTTGCATGAAGAGGATGTAGCGGCTGGATGGAGGTCTTTCATGACAGTTCGGTATCCTTTTGGGTACTATATACCAAAAAAGTGCATTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //