Array 1 120033-120671 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCSV02000013.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0374 NODE_13_length_128064_cov_32.232224, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 120033 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 120094 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 120155 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 120216 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 120278 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 120339 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 120400 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 120461 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 120522 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 120583 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 120644 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9355-12251 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCSV02000021.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0374 NODE_21_length_77368_cov_30.674150, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9355 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 9416 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 9477 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 9538 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 9599 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 9660 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 9721 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 9782 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 9843 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 9904 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 9965 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 10026 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 10087 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 10148 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 10209 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 10270 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 10331 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 10392 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 10453 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 10514 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 10575 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 10636 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 10697 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 10758 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 10819 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 10880 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 10941 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 11002 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 11063 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 11124 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 11185 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 11246 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 11307 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 11368 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 11429 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 11490 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 11551 29 100.0 32 ............................. CAGTGAAATAAAACCAACGCACTGGGTATCCC 11612 29 96.6 32 .......T..................... CCCACCGCCCAGCCCGGATATAGTGAACTGGT 11673 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 11734 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 11795 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 11856 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 11917 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 11978 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 12039 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 12100 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 12161 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 12222 29 96.6 0 ............T................ | A [12249] ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //