Array 1 66454-68283 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028491.1 Carboxydocella thermautotrophica strain 019 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 66454 33 100.0 33 ................................. CCCGGCAGCTGTTCTAACTAATATCCTGGAGGC 66520 33 97.0 32 ................................C CGTTTTCACTTTTATTATATTCGGTAATAACC 66585 33 97.0 34 ................................G CCAGCATGGAGATGAAGTGGGATGCCATCGTTGA 66652 33 97.0 32 ................................G CTGGTGCGAAGAAAACGGCATACCAATAGAGG 66717 33 100.0 34 ................................. GAATAACCTGCCCAGAAAACCGTAGCAGCGGGTA 66784 33 97.0 35 ................................T GAGCCTATTCCGGCAAAGGGCGAAAATACAGTATC 66852 33 97.0 33 ................................T TGAAGCTGGCTGGCACTGGAACTTGGGTATAGT 66918 33 97.0 33 ................................T CTCTCTGCCCAGCCGTCTGCCAGATCGGTCTGA 66984 33 97.0 39 ................................T GAGTTGAACGGAGGTGAATAAATGTCAACGTATCAGCAG 67056 33 97.0 34 ................................T ATTATAATTGAATTCGGTGCCCACCCAGGCACCG 67123 33 97.0 33 ................................G GGTCCTAATCCGCATGGTGCGGGACGAAAAACT 67189 33 100.0 33 ................................. GCAAAATATGCAAAAGCCAGGATTGCCCTGGCT 67255 33 97.0 34 ................................T AAGGAGGGACAAGCCATGTTGGAGCAACCCGGGG 67322 33 100.0 33 ................................. GCCGGGTGATACCCTCTGGTCTATAGCCAGAAA 67388 33 100.0 33 ................................. GCACAAAGTCTGCCTTGACACCTTCTGGCAGGC 67454 33 100.0 34 ................................. ATGCGCCAGATAGCAGCCTCCCCTACTCCGGCTT 67521 33 100.0 33 ................................. GGTAGCGCTTGAGGGCATCAATCTTGGCCTTAT 67587 33 100.0 32 ................................. TGGAGTGCTGATACAAAAGCCCCCAGCTCTAA 67652 33 97.0 32 ................................T TCGTATTTTTGCTGCATTTCCCGCTCCAATTT 67717 33 100.0 33 ................................. TCGAGACGATAGCTATTTGTTTTACCATGCTTG 67783 33 100.0 34 ................................. TCTTCATCATTATAACAAACGTCATTTGCAGATA 67850 33 97.0 35 ................................C CGTTTTTGCGGGAAATCCTGCAAGAAAAAGAAACA 67918 33 100.0 34 ................................. GGGCTACCGACAGGACAAGAGCTGTTTTCCCCAT 67985 33 97.0 33 ................................C ATATACTTAGGTGAAAGAGGAATTAATAAGCAG 68051 33 100.0 35 ................................. TTTTCCTTTTCAAAGATATTATTGCCATTCTCTGT 68119 33 97.0 32 ................................T ATGTAAAGCCTGCTCCCCAGCGGGACAACAGC 68184 33 97.0 34 ................................G AAATATTGGTTGGCAGGGTAAAAAATCTGGATGA 68251 33 93.9 0 ...............................GT | ========== ====== ====== ====== ================================= ======================================= ================== 28 33 98.2 34 GTCGCACCCCGCAGGGGTGCGTGGATTGAAACA # Left flank : CACCTTTCATCTGGAAATAAAAGGGGCTGATTTTATGATGGTGCTAATAACATATGACGTTAATACAACAACGGAGGCAGGAAGAAAAAGGCTCAGGCGTGTTGCAAAACAATGTACAGATTATGGACAAAGAGTACAAAACTCTGTATTTGAGTGTTTAGTTGACCCAGCACAGTTTGCTCAACTTAGACATAAACTTGAAAAAATAATAGATGTTGAACAGGATAGTTTAAGATACTATTTTTTGGGCAAGAACTGGAGGAATAGAGTCGAGCATGTTGGTGTGAAACATGGTTTTGATCCTGAAGATAGTCTAATTTTATAGCGGTAAAAGTGCGGACCACATGTGAACGTGTTTTTCCTGAGGTTTCGCACCTTAAAGGAAATGTTAGATTTATGAAAAGTACTTTGTATTTTAAGGAATTAAATTATAGCAAATCAATAGGTTCGCGAAAAGTGTAAGTATAATACTTGTAATACCTTATTTTGTAATATGTACA # Right flank : TCTGGGCAGGTTAATTAAAAAATGTAAAAAACTACATTTCTGGTGTAAATGGATCTTTATTGGATTATCCTCAAAATTGTTTATCTTCCTTGCTTTCTGGATATACTGTACCCATAAACAAAATGGGAGGATAGGACATGGAAATGATGGCGGCAGCACTTGCCGCAGTGATTGCTTGGTCGGTCAATCGCAGGACTCAAACTGAATCGGGCTGGCGAACAGCCATCTTATTAGCCCCACTAATCGAAGAATTAGCCAAAACCGGTTTCGCTAAAATCCTATCAGCCCAGGTATTACCCGTGCACCTCTACTTCGGCCTCATTGAAGCAATCTACGATGCCTGGGCCAAACCTGAGCGCCATCTTCTGCCGGCCCTGCTCAGCCTGCTCAGCCACGGCTTTTTCGGCTATCTCACTGTCAAAAGCGGCATCCTTGCTGCCCTGTTCGCCCATTTCTCCTGGAACGGTCTGATCTGGTACATGCAGAGGAGGAGGCAAAAT # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCAGGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //