Array 1 466137-464708 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAZP010000002.1 Clostridium saccharobutylicum strain DJ081 Ga0423247_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 466136 28 100.0 36 ............................ TTGATGACGCTTGGTCTTCTGTCCAAAATAAAACCA 466072 28 100.0 37 ............................ CTATAAAGGGGGAAACTAAATGAAAAATATAACACGA 466007 28 100.0 36 ............................ AAATAGGTTGGTCGATAAATGAATCAACTGTAAGCA 465943 28 100.0 36 ............................ GTGGAAAGAAGTATACTGAATTGCTTCATAAATCAT 465879 28 100.0 35 ............................ TTCAACGATAATATTTTTTTAGCTAATTCAGTTTC 465816 28 100.0 36 ............................ TTATTTCCATACACTTGATATGCTGTAGGTTCATCA 465752 28 100.0 35 ............................ TCGATTTGCATTTGACTATCTGATGTTGCAAATGT 465689 28 100.0 36 ............................ AATGATAACATTAATATGAATTTTATTAATGAAGAA 465625 28 100.0 36 ............................ GAGATAAGAGATTCTGCTTTATTCAATGGATTAAAC 465561 28 100.0 36 ............................ ACTAATTCATCAAGGCTAATATTATACACTTCACAA 465497 28 100.0 35 ............................ TAGCTCTATAGCGTTTTGCATATCATTACTAATTG 465434 28 100.0 36 ............................ AGAACTTGTCCTGGAACATTTGTTGCTTGCAAGTCT 465370 28 100.0 35 ............................ TGCAATAACATTAACTTGATTCCATTTATCCCCCA 465307 28 100.0 35 ............................ AAGCTTCTATATATTCATCATTTTCACTCTGAAGC 465244 28 100.0 35 ............................ CAATATACACCTTGAGCATTAACACTTCCCGACAA 465181 28 100.0 35 ............................ CATTAAATAAAGCATCATACTTAGCTTTAACTTCA 465118 28 100.0 36 ............................ GTACGTTTTTCCAATGTTGTTGTAAGATTTAATATT 465054 28 96.4 36 .......A.................... GGAGAAGTTATGGATGTAATTGAAAGAGGAAGCACA 464990 28 96.4 36 .......A.................... AATAAAAGAAAAGCTCCAATTGGTAATTCGTTAAAA 464926 28 96.4 36 .......A.................... ACTATTACATCTAGTGCAACAAATATTCTGGCTTCA 464862 28 96.4 36 .......A.................... TTAAAGAAAAGTAAAATATGTAAAGATTATCTTTAT 464798 28 96.4 35 .......A.................... ACTAAAAAGGTTAAAAGTGTTAAAGAGCCTATACG 464735 28 67.9 0 .......A......TATT...A.CG..G | ========== ====== ====== ====== ============================ ===================================== ================== 23 28 97.8 36 GTTTTATCTTAACTAGAGGAATGTAAAT # Left flank : TAAACATTTGATAAAAGATGAAAAATATAAACCGTTGAAAGCTTGGTGGTAATATGTTTGTAATAGTAACTTACGATGTTAATGAAAAAAGAGTAAACAGAGTTAGGAAAGTATTAAAAAAGTATATAACATGGTGTCAAAATTCAGTTTTTGAAGGAGAAATAACTGAAGGAAAATTAACAAAATGTATGGCAGAAGTTAAAAAATATCTAATAGATTCAGAAGATTCACTATATATTTATAGGATTCCTTATAGTAAAAATATAAAGAAAGATGTTATAGGCGTTGAAAAGAATTTAGATGAATTATTTTTATAATTGCATTAAGCGATTTTTAGTATTAAATCTATCTCAAGGCAGTTGTTAACAACGGTGTAATCAATTTTATTTAATTATTAAAAATCACTACTATAGCTTTACTGCAAAAGTTTATGCTATAATATAAAAAGATATAAGCTAAGATGGCTAATATAAAGGGTTTAAGTTATGTGTTTTTTCGGG # Right flank : CTATTTTTTCCTTCCTTAATAAGGTTCTCCATTGTGCATCTATTACAATAAAACGTTATTACAGATTCTAGACGGATGATCATATTTGTTACAACAAAAGTATAATTTATACACATTTGACCTTCTTTGTTTTCTAATTTCACAACAACTCTGCGATTTTTAGTTAATTTCTTTGCGTTATACATGAATTTGCAATATATGATATTATGTTAATACATGTTCCTTTTTTATAATTATTCCATAATTAATAAATTATTGATAATATTTATACAATATTGCATTTGCTTTTAGTCTTATGGTATATTTAGCAGCATGTTCTTCAGAAGCCTTGTAAAATTCTGGTAGAGAAAAACCGCTATTCCCATGAATGTATAGTCTATATAACTATATTTATTTGAGTATATTTTTAGTAATGGATCAATAAAAGCCACTGTTGTTCTTAATTTATAAACATTCCCAGATCTTAATTATGCTTTTAACAAATCACCTGCTAATCCATT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTTAACTAGAGGAATGTAAAT # Alternate repeat : GTTTTATATTAACTAGAGGAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 80416-80239 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAZP010000001.1 Clostridium saccharobutylicum strain DJ081 Ga0423247_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ============================== ================== 80415 39 100.0 30 ....................................... AGGATTGGACATTTAGCGATTGTTATAAAT 80346 39 97.4 30 ..G.................................... GAGAATATGCATTTGTTAAGTGCGTTAATT 80277 39 94.9 0 .......C.........................G..... | ========== ====== ====== ====== ======================================= ============================== ================== 3 39 97.4 30 TAAAAAGTATAACAATACCAGATAGTGTAACAAATATAG # Left flank : GAATAATATATTCTGAAAGTTATGTTACAGTGCTATTGGGTAAAAACGAGAATAAGGGGAATGAATGATGATAAAATTGAAATTAACAAAAGTAATGGCAAGTTCATTAATACTAGCTTCAGTATTTGCATTAAATCCAATAGGAGCAAGTGCAGAATGGAAAAAAGATAGTAAGGGGTGGTGGTATACAGAAGGTGATTCGTGGGCTACAGGTTTGAGAGAGATTAACGGAAAGCAGTACTATTTTGACAAAACAGGATACATGGTCGAGGATAAAATTGTTGATAACTTGTATTTTGACAGTAATGGAGCAAGGACAGAATATATATGTGCTGACGGATTTGCAGTTGATAAATTAACTGGTACAATAATAAAATTTAGTAGACAAGATGCTCGGGTGAGGCCAGGCGAACCAGGTATTTCAGTAGTTATACCAAGAGAAATTGGTGGTGTTGAGATAAAAGGTATAGGAGGTAAGGCTTTTAAGATTTGTACTAACA # Right flank : GAGATTATGCATTTTCGGACTGCAATAATGCTATTTTTTATGTTGGAAATGAGAAAACAAAACAACTTATTCTTAATTCAAATTCAAAGATAGATAGTAATAAAATAATAATAAAATCACAAATAATATAATAATTAAAGGTAAGCGTCAAAAATTTAGTAAATAGAATACAAGCACTTCCTTTGATAAAATATCGAAATATTCTATTTAAAAGGAAATTTTAGGAGATCCGTTTGTAGAGAGGGACATTTAGATTAAATGAAAATAGTAAATACATAATGTTCTTAAAAGGTGTGACAATTGGAGTTTGTACGTGTTGCACAAATAGAAAATTGAATCACTTTAAAATATAGGTAGGCTTTGTCAAAGTCTATCTTATTTTTTGTAAAAATATAGATAGAAAATAAAAATTATATGAGAGGAAATATTTTTATTTACGTTATATAATGTGTAAGAGCTTTTACGAAACTAATTGATTGGAGAAATTTTAATGAGGTGTA # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAAAAGTATAACAATACCAGATAGTGTAACAAATATAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 108840-109327 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAZP010000001.1 Clostridium saccharobutylicum strain DJ081 Ga0423247_01, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 108840 30 100.0 36 .............................. AGGAAAAACAAATACACTTGTATATGCTTATAATTT 108906 30 100.0 36 .............................. CAACTAGTAGTATATCTAATTCTAATAATTATTTAA 108972 30 100.0 36 .............................. GAATTCAATGTAAGTATTGATGGCAGTTTCACTAGT 109038 30 100.0 36 .............................. ATTTGAAGTGAATGAACTTATGTGTATAAAATTTCT 109104 30 100.0 35 .............................. AGCGTTAAATCTAAAAATAAAAAAGAAAAAGTTTC 109169 30 100.0 34 .............................. TAAATTCGAATGAGTACGAAATGGATGGAAAACA 109233 30 100.0 35 .............................. GAGTTTTAGTTAATACTAAGGCTTTTTTTATTGCC 109298 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 100.0 36 ATTTCAAAACATATAATGTTAATCTTCAAC # Left flank : ATAGGAAAACAAATAACACCTTAGCTTCATCATTATTAACAGCAAATACTTCATTATAATAATGATTAAAGAAAACTATACCTGATGCACGGGAATGATTAGAATTATTTACTTTTATATTTTTATACTTTTCATTTTTCATTTTTTCTTTTTGAAAACCAGGATTACTCTTACCTACATCGTGGAAAAATACAGTATTTAATACAATTTCCTTCCACAAATTAATGCATTTACTTGAGCAGCCTTTTAATAGTCTTTGTTCAAAATTATTAAATACACTATCTAGATTTTTTACATCTACTATCTTATAAAAATATTTTATGCACCGCTCATTATGCTCAGCTAGAGTTTCATATTCTAAAATGTCACTCTTAGTATGAGAATATATATCAGATGGCTCTTTTAATAACGTAGATATATCTATAATTTTTATATTTTCAAAATACATAAATTCTCTTCTTCCTTTTTTATTTTTATTAAATTAGTTGGACTGTATCTAT # Right flank : CCAAAGTAAATAAGTCATTTCTATATATATTAATATCTTTTAATCCAGCCATTCACCTACATTTGCATATTATTTTACCAGCTATTTTATAAAATTAAATACAATAATACTTAAAATAGTAAAAGCTCATAAAATAGATATTTCGCTACAAATTACTTATTAAAATCGCCTGGTAAATTATTTGTATACTTGTTACTTTTTAATAGAAAAATAGATTTTTATCATTAATACTATAGATAATAGATTCTTTATCATTAACCTCTATAGACTTATTAGTACAAATAAATTTTCTAGTATCATATGTATTAAACTTAGGTTCCAAAGCATATGGTAAAAACTCTTGGTATACATATTCTCGCATTTTTTCTAAACCACAGCTTGGTGCTGCTTTAACAGGTCTAAATCCATTAGGTTTGATTAATTTTTTTATATTAACACAATCTTTTAAGAACAAGCTATCCAAAGTAGATATATAGGAAACATCTTGTGTTTCAACACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAAAACATATAATGTTAATCTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 3024967-3025139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAZP010000001.1 Clostridium saccharobutylicum strain DJ081 Ga0423247_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 3024967 35 100.0 34 ................................... TGATAGTGCATTTTTGGGTTGTGTTGGTTTAACG 3025036 35 97.1 34 .....................G............. GGCTTCTGCATTTACTTACTGTATGGGATTAACG 3025105 35 94.3 0 ...........T...G................... | ========== ====== ====== ====== =================================== ================================== ================== 3 35 97.1 34 TCAATAACAATCCCAAACAGTATAACAAGTATAGG # Left flank : CAGCAAGTACTTCTTACAAATTTAGATTAGTAATGAATGATGCTTTTTATGGAAGTTCCCTTGATGTAACAACAGATGCAGGACAAGCACCAGGAATAAACAGTGTTTCAGTAACTCCAGCAACTTCAAGTGTAGAGCAAGGTCATACTGAACAATTGACAGCAACAGTAGATGCAACAGGAGGAGCAGATCAAAGTGTAACTTGGTCAAGCAGTGATACAAATAATAAAGTAACAGTAGATGCAAATGGTTTAGTATCAGTAGCAGCAGATGCACAGCCAGGAGACTATACAATAACAGCTACATCAACAGTAGATGGAACTAAGAAAGGAACAGCAACATTAACAGTACATGGATTTAAATTTGCATTAAATGGAAATGAGTGTCAAATAACTGGGTATACAGGGACAAGTACAGACATTACAATACCATCTCAAATTGGTGGGAAGAGTGTAACAAGTATAGGTAATTATGCATTTAATGATTGTATTAACTTAATA # Right flank : GGACTTCTGCATTTAGTTATATTAATAATGATGCAATATTCTATGTACCTGATTTGGCTAGAGCAGGATATGTTCAGTCATATAAGACAAATAGTAATAATATACAAATTATTTTGTCATCAGTTCCTTTAACGTTAGGTCAAAAAACAGCAACAACAGCAACAGTATCGTTTCCAGCACAAACAGGAGCGACTTCAGTAAAGCTGCAACAATCGGCAGATGGAGGAACTACTTGGAGTGATGCAGCAACAGGAGCGTTAGATGCTTCATCAACAAGTGCAACTGTAACAGGATTAACAGTAAGTACTTCTTACAAATTTAGATTAGTAATGAATGATGCTTTTTACGGAAGTTCCCTTGATGTAACAACGGATACAGCGGCAACGACAGCATACACAGTAGCAGCGGCGGCAGCAAGTTCATCACCAACAGCAGGAGTAGATAACGTAGTTACATTAACTGTGAAGGATTCAACTGGCAGCACAGATACAACCTTCACT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAATAACAATCCCAAACAGTATAACAAGTATAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //