Array 1 7887-6269 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAWC01000029.1 Bacillus sp. JCM 19047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 7886 32 100.0 35 ................................ TGTTCATGGGCGCTCGGACGAAACAAGAAAGAGCA 7819 32 100.0 33 ................................ TGTCACCTCTTCGCGATCGCCGTTTCGGTCAAG 7754 32 100.0 33 ................................ GTCACAGGCTCGGCGAATCGCTTGGCTCCGAGC 7689 32 100.0 35 ................................ CGGATAACTTTAAGGAGCCGGAAGGGTTGACCGTC 7622 32 100.0 34 ................................ GAACCTGTCAGGCAATCAGAAAAAGCTTGTTGGA 7556 32 100.0 33 ................................ GTCAAACATCCACAGCAGAAGTTCGTCCGAGGT 7491 32 100.0 33 ................................ TTGTGTGGACATTTGCCAATCTAGGTTGCTCTT 7426 32 100.0 33 ................................ CTTGATAAGCCTGTCATTTCGGCAAGATCCCCT 7361 32 100.0 35 ................................ GAACGTATCAGAAGACGATGCTATGTTGCATGCCC 7294 32 100.0 33 ................................ TTAGTACTAGTGATAGTCGGTTTAACTATCGCG 7229 32 100.0 33 ................................ GAATTAATTAATCGCATTTTTTAAGGGAGTACG 7164 32 100.0 36 ................................ AATTATGTTATGGTGGTCATCGTAAGGGAACACTAG 7096 32 100.0 33 ................................ AAAACGCTTGTCAACGCCTTGTCGCCGGATGAA 7031 32 100.0 35 ................................ TTGACCCGCCACCAGCAGGCGCGCCAGTCGAAATC 6964 32 100.0 36 ................................ GATCTGACAGCATTTCGTCAGCCTCTTCGTAGTAGC 6896 32 100.0 34 ................................ ATCGCGCCTAAGCCGATCGATTTCATCATACGAT 6830 32 100.0 33 ................................ TCAAGCAACGTCGATTTGCCCCCTCTCGTCGGC 6765 32 100.0 33 ................................ ATGGAACTAAGCGGCAACGCGCCCGTTGTGAAG 6700 32 100.0 34 ................................ TCTATAGATGCAGGCATTTCTTTAAAAGGTAAGA 6634 32 100.0 35 ................................ ACATGGGAACAAATAGAACAAGCCTACTTAGACAA 6567 32 100.0 34 ................................ AAATAGTAAAAACTCACCATTTGCTGTTTCATTT 6501 32 100.0 35 ................................ TAATATCTGTAGCGTCGAGTCCCAAAGCGCTTGCC 6434 32 100.0 34 ................................ GACCAATCAGACGCCGGTAAAGCTAAAGTGCGTA 6368 32 96.9 36 ...............................A CTCTTTGATCTTAGTCTCAATTGCTAGCACCGAGTC 6300 32 78.1 0 ..........C..GA........A...C.T.C | ========== ====== ====== ====== ================================ ==================================== ================== 25 32 99.0 34 ATCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TAACTTAATGTAATAAAACAAATAATAATACTTAGCATAATTAAATTCTTTATTTATATAATGAATGTCATAGAATAAAAGTATTACTTATTACCGTTCTGAAAAATGGTCGCTGTCATCAACCACGCGCCATATGACCTTTTTTACAATTAGATGAACTCTATTAAATTTTCTTTTATAAAGATCATCTATCAGAGGTCAAATAATAGATTTTTATTGTATGAAAAAAGGAAATCAGTGAATTTATTCAAACAATTAATAAAGAGCCAATTTCAAGTCAAAAGCTACAAAGAGGTTATCTTCATTTAGGAGAACCTTTTTTGAGAGTAACGTCATAATTGGTGCGAACCCTAAGCGAACATAAAAACCCTGGGTGACCCGCACCGCTTTTTTGACTTAATATGTAACAATGTGTAATTGGTTTTGCTGAAAATCTTTCTTGAAGGCTAATTTGTGGTAATATTTAGGGGGAGAAAGGTGCTTTTAAGCGTTCTCCCGCT # Right flank : TGCAGAAATTAAGGGAATATGTTTAAAAAGGGTGGAAGGTATGTCTACAACTGACATGAAAGCAAGTATCAATCAAGATACGCTAGTGAAATGTGTGAGTCAGAAGCTTAAGCGCTCTTTAACAAAAGGAGAGCTTGAATGGAACGTACAAGCTTTATCGGGAGAAGTGAATTTTACAACGCAAGGCATTTACCGTGTTTTTGGCTCGGCCCTTAAAAAGATAAAATGGTCGCTTATAATAAAAGTGATTCAAGAAGTAGAGGATAAACGGAACCCGCAGCACCATAATTATTGGAAACGAGAGGCTCTTATCCATCAAACTGGTATTCTTAATCGTTATTCGAATGTCATAAAAAGCCCAACCTGTTATGAGGTCGAGGAAAAAAGTGATGGTACGATTTGGATTTGGATGGAAGAAGTGAATGGGCTCATAAGCAGTTCTCAAAGGAAGATTTTGCTGTTATAGCGAAATCAATCGGACACTTTAACGGAACGTACGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 23344-21723 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAWC01000029.1 Bacillus sp. JCM 19047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 23343 32 100.0 33 ................................ CGGTTTACTTAAGAGGTTTATTAAAAGAAGATC 23278 32 100.0 35 ................................ AAGAAGGGTGTGTATGTATGAGACATGAGGAACTA 23211 32 100.0 35 ................................ TTGAAGTTGTATCCTGAATCGTCTTGATCGTCATT 23144 32 100.0 33 ................................ GCTCAATTGCCATCGAATCAATACGCAAGTATG 23079 32 100.0 35 ................................ ATGTTAGAGATTAAATACTGACGTAAAGCAGTAGC 23012 32 100.0 36 ................................ AATTAAATCACATTGGCTTGAACAAGGTTACGGAAC 22944 32 100.0 34 ................................ TGAATAAGTCCTCGACCGTATCGAACGCGTAAGG 22878 32 100.0 33 ................................ ATGCTGACCCTCCGTTTGTATATGTTTGTTTAC 22813 32 100.0 34 ................................ CCAACTGTTCACCTAAATCTAACGCCTCATAGAC 22747 32 100.0 33 ................................ CTGAATGGTGTCTTACGATATGGGTTACAGCCG 22682 32 100.0 33 ................................ ATCGAGAAGTCCGACGGATTAATGATGATATCG 22617 32 100.0 35 ................................ TTATTGCTCTTTTAATGTCCGACACGATTCTAGTG 22550 32 100.0 36 ................................ GTTATAGGTCGGTGAGAAGTCGCCGCCAAACATGAT 22482 32 100.0 35 ................................ CTCCTTGTTGCATTGCATAAAAGGCGCTACCCGGG 22415 32 100.0 33 ................................ ATAATACCTACAGGTTTTTGGAGAGTCATGCAA 22350 32 100.0 36 ................................ GAGATCCTATGAGGGATTATCGCCCCAAAAACGATC 22282 32 100.0 34 ................................ TTTGCCGGGAAGCTCAAGAAACAAATCGTCTTGG 22216 32 100.0 33 ................................ ATGGATCGGCTTGGCGTTGTTATTTGCAAAACC 22151 32 100.0 34 ................................ ATCGCCGCCGACTGGAAAGTATACCAGCTTGACC 22085 32 100.0 34 ................................ TGTGGTGAGGTCAAGGCTCTATGGTCTCTACACG 22019 32 100.0 35 ................................ TTATCGTTATAGTTCGTCTCTTGTATGTGTAAGGC 21952 32 100.0 33 ................................ ATTGAGGCATTTGATGCTATAGACATAGGAGCG 21887 32 100.0 34 ................................ ATTGCCGCCGACTGGAAAGTATACCAGCTTGACC 21821 32 100.0 35 ................................ CTCCACAGCTTGAAACCTTGAGCGACCAACTCAGC 21754 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 25 32 100.0 34 ATCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : CGCGGTGATTTAGACGAATACCCACCGTTTTTATGGAAGTAGGTGAACTATGCTCGTTTTGATTACATATGATGTAAAAACATCAAGCCCAGGAGGAACCAAAAGACTGCGTAAAGTATCGAAAGCATGTCAAAACTATGGACAACGCGTACAAAACTCTGTATTTGAATGTGTATTAGATTCGACCCAACTAACAATTCTAAAACATGAATTGTTGGAAATGATTGATCCCGAAAACGATAGCTTACGTTTCTATCGTTTAGGAATAACTACAAGACGAAGTTGATCATGTTGGAGCAAAACCAGCTTTACAAATAGAAGATCCACTCATTTTCTAATAAGTGCGAACCCCAAGCAAACATAAAATCCCTAGGAGACCCGCACCACTTTTTAGTATGAATGTGTGAAAATATGTAATGAATAGTGATGTTACGCTCCTTTTACTATGTTTTTTTTGGAAATTATTAGTGGAATAGGGCTTGTTTTGTCCTTATTCCGCT # Right flank : TCAGGTGATTTATGTAGCAACATTGGGTAAATCAAATCGCACTTTACATGAGTGAATGATGACCATAGCATCCGAGACAATCGGACTATGTACCACTCTCGATATGTCTGTACATGTAAATCTCTAGACAAAAACCCCCACTTTTAAAGTAGGGGTTTTCAAGTTTACAATCCAAACACAATTGGCATCCAGAAGTACACGGCTCCGGTAATGACGATAATAGAGACGATGTTGAGCCATACACCAGCTTTCGCCATGTCACCGACAGCGAGATAGCCTGCGCTAAATACAGCTGTATTCGGAGGTGTGGCGACTGGGAGCATATAGCAGGAACCAGCAGCTAGTGCAGCGGCAGCCATAAGAGGTAGAGGATCAACACCTAAGGCAATACCGAGTCCGACAGTAAGTGGTAGAATTAAATTTGAAACGGCCGTATTAGAGAGAATCTCTGTAATCCCGAGTACAAATACGACTAAAAGCAATAAGACGAAAATGTATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 32688-32055 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAWC01000029.1 Bacillus sp. JCM 19047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 32687 32 100.0 35 ................................ AAGATTTACGAATTGTTGGTGTAGTATATTATTCC 32620 32 100.0 34 ................................ CGAGTAAACGACCGGTTAGAAATTGATTATGCCA 32554 32 100.0 33 ................................ ATTGCCCATATTGTCATGTTTATGCCGAGCATA 32489 32 100.0 34 ................................ TAGCTAGGGATTGCATAGTAGGTATCTCTTTACC 32423 32 100.0 34 ................................ AAGTAATGGCGCAACAACTTTATCGCTTTCCACA 32357 32 100.0 35 ................................ AATTTTAGAAGCTGCTTGTTGGTTATTATACGGCA 32290 32 93.8 36 ............A...A............... GTCTAATTCTCCATGCAAAGGTACTTTCCAGTCGTC 32222 32 93.8 36 ..T.........A................... TGGTCTTGCGTGCGGCATCGCAATAGATGGCGCGAT 32154 32 93.8 34 ............A..........A........ TGTAGATGGAGATTTAACTCTGCCATTGAATAAA 32088 32 96.9 0 ............A................... | GT [32058] ========== ====== ====== ====== ================================ ==================================== ================== 10 32 97.8 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : TTTAAACAGCGCATCGCACAGATGGCAACAGAAATAAAAGCGAACCCTCGTGCAGATGGAGTCGAAGAGATTTTTTTACCAGGCGAACGCGAAGATATGGAAAAGGCAAAGCGACTAAAAGAGGGTATTCCATTATCCGAAGCGGTAGTCAGTGAATTAGAAGAAGTTGCCGCCTATTATGGTGTTGCGATGGACCGTGATCTATTAAAAATGTAAGGGAAAGGGAAACTATAAAGAACCTCATAATTGTCCTGCTTCTTCGCCCATTAGCTTACGAGTTTTCTGTTTGGGGAATGTCAAAAAAAATGAATGTGTAGTGAGTCGCCCTCTTCTTTTAATAGGTGCGAACCCGAAGCGAACATAAAATCCCTAGAAGACCCGCACCACTTTTTCGGACGAATGTGTGGGAATATGTAACGGATATGGAGCGTGGGTGCTTTTTCTTAATCATTTTGTGGTACTATTTAATAGGAAAAGGTAGTTTTAAGCCTTTTTTCGCT # Right flank : GATCATGATCGCTCCAATCTTTTTTAATCAAATATCAAACTATCTTTGATTTCTATGTTGTATGAATTGAAATTTATTAATGAGGAGGTAACACTCCGAATGAGAGACGTCTACTGTTTAAAAGTAGGCGTTTTTATTATGGGAAAAAGATGCGTAGTTAAATAAGTTAAGTGTAAAAACATATTTAACTATATATGTGGAAATGAGAAAAATGTAGAAAAAAAGAGGTTTTTTGTCTAATCGTACGAACATATAGTGTAGGACATAAGTTGTGTGGAGGGAATATGTTTGTAGCACACTATCGATCTAAAGATAAAGAGATCCAATCTGTTCGTAAGCATCTCCTTGACGCTCAATATTTAGCAGAGCATTATGGTGCAAAATTAAATGTAAGGTATATGGCTGGTTTAGCAGCCCTTCTGCACGATTTAGGAAAATATAGTGAACACTTTCAACTGTATCTTAGCCAAGCTGTTTTTAAACAAGAGAATCCTAAATTC # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //