Array 1 163367-160836 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLN01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462410, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163366 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163305 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163244 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163183 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163122 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163061 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163000 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162939 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162878 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162817 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162756 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162695 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162634 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162573 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162512 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162451 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162390 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162329 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162268 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162207 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162146 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162085 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162024 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161963 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161902 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161841 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161780 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161719 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161658 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161597 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161536 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161475 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161414 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161353 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161292 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161231 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161170 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161109 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161048 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160987 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160926 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160865 29 93.1 0 A...........T................ | A [160838] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181489-179874 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLN01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462410, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181488 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181427 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181366 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181305 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181244 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181183 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181122 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181061 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181000 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180939 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180878 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180817 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180756 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180695 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180634 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180573 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180512 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180451 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180390 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180328 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180267 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180206 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180145 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180084 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180023 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179962 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179901 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //