Array 1 1518659-1524340 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077717.1 Saccharolobus shibatae B12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================================== ================== 1518659 25 100.0 40 ......................... TTAACGATAAGAAGCAGGAAGATACATCAAAAACCCTTTC 1518724 25 100.0 39 ......................... AGATATTTATTAAAATCAATTTTTCCACGCCATAGTTCA 1518788 25 100.0 37 ......................... TTATTGTGTGGAAACAAGTAAGTGGCTTATCTTCGGA 1518850 25 100.0 39 ......................... TATTGATTGTAAACAAATATAGCAGCCACTTGCATTATC 1518914 25 100.0 39 ......................... AGGTATAGTACCACCACAAATACAGTCATATATAACTAA 1518978 25 100.0 38 ......................... TAAAGTAATGTATTTGATTTCTCATCCTTCATCCTGAA 1519041 25 100.0 39 ......................... TTTCTCACTCATTTGTCATCAAAAAAGATTATGCAATCT 1519105 25 100.0 39 ......................... GAGATAGAGATTAAAAAATTGTTAAAACAACATAACTTA 1519169 25 100.0 41 ......................... GAGGTGCAAAAAGTTGGCACAAGCTCAAAACCCAAAAGGTA 1519235 25 100.0 35 ......................... TTCCCTACGCTTGAAATGCCGTTCAGAATGTCGTT 1519295 25 100.0 35 ......................... TACTCCTCACCTCCTTCCTTTTTTTCCTCGATTTG 1519355 25 100.0 39 ......................... TCCATGTTCAAGAAGCGAGACAAGAAATGACATTTTAAG 1519419 25 100.0 36 ......................... ATTAAGTTGGCAAAACGCTTAACTAAAACCAGATCC 1519480 25 100.0 39 ......................... TCCAGACTACAACATCCTTTATCTTGCAGTATAAGAATT 1519544 25 100.0 41 ......................... TTTTTCTTACTTCATCTATATAAAGTCCAAATAAAAATCCT 1519610 25 100.0 38 ......................... GTTTCCTAAATTGCTTTTGTACACGCTGAACCTTAGAT 1519673 25 100.0 37 ......................... ATTCATTTCGGCGTAAAGCTGTCCCATATTTCTCCTA 1519735 25 100.0 35 ......................... GCACTGCATTCTGGATACTTAATGATGACTTGGGA 1519795 25 100.0 38 ......................... TGATAAAGGGTGGCAAGAATATCTATTATATCATAGTC 1519858 25 100.0 38 ......................... AATGATATTCCCCAAATATTATTTCTGTTTCCTTTCTT 1519921 25 100.0 38 ......................... AGAAGTACTACGAAACACACATATACTATAAAGGCAGA 1519984 25 100.0 37 ......................... ATAAGTATTTTATATCATCTCTAAGTTTTGTTAGCTC 1520046 25 100.0 40 ......................... GTTACAGCGCTAGTACCGTTCGCAGCTAATGTTAATGCCT 1520111 25 100.0 35 ......................... CTCCATAGGTAAAGGACTATAAAACGCTCAGTCTT 1520171 25 100.0 39 ......................... TTTATAACTAGATAAAAATGCGTTCATTAAAAAAATTTT 1520235 25 100.0 39 ......................... ATATGACATTATAGAAGAAGATGGGACTATGAAAGTGCC 1520299 25 100.0 38 ......................... CTTGGCACTTTGAGAACCCTCATCTTTCTCATGTGAAT 1520362 25 100.0 40 ......................... TAGATCAGGTGTGGAAACATATTCAGGAATGCCCTGAATG 1520427 25 100.0 39 ......................... TTCTTAGTTCAACGATAATCGGATATGCAAATTTACTGT 1520491 25 100.0 41 ......................... TGCTAAACTCTCAAGTCTTGAAATTTTGAATTTAGTAATTG 1520557 25 100.0 40 ......................... TTTTCTGAAGTTGAAAAAATCGCTCAACTGAAGAAATTTT 1520622 25 100.0 37 ......................... AGCTTTTTTCAATCACAATATTTATTCGGTACACCTC 1520684 25 100.0 40 ......................... ATTATATACTCTTGCGGTTTACAATAAGAAAACTATTGGA 1520749 25 100.0 36 ......................... GGATTATCATCAATTAATATCGCATCCCCAACTGTC 1520810 25 100.0 40 ......................... TTGTTTATCACTCTTCGCTCCAACCACACCTACTTGATAT 1520875 25 100.0 38 ......................... TTTATTATCTTAAACTTCGGATGGTCTAGCAGACTTTT 1520938 25 100.0 44 ......................... AAGAATGGTATAGCTGAAGAGAAGTCGGGGACTAACATTGGTTT 1521007 25 100.0 41 ......................... AATTCATATAGATGAATAAGGTGAGTAAATGGCAAGTCCAG 1521073 25 100.0 39 ......................... AATACATTTTTAATTCTGTATCGTTCTTGCATTCTAATT 1521137 25 100.0 39 ......................... TATTTTATTAATAGCAGTGGTGGGTTTAGTGTGGGTAGT 1521201 25 100.0 43 ......................... TGAGAACTTAAAGTAAAATTGGTATCGTCAGCAGCAATCACAA 1521269 25 100.0 37 ......................... TTTATTATATCTAGTCCTAAATATAATGTTAATCTAT 1521331 25 100.0 37 ......................... TCAGATAGGACACGATATTAGCAAAGTTCTGCATTGA 1521393 25 100.0 38 ......................... TCTTGTCCCACACCTTTCACCTCTAATTTACTATATGT 1521456 25 100.0 36 ......................... GTCCTCATCAATGTCGTCAAAATACACTATCTCGTT 1521517 25 100.0 39 ......................... GAATTACTATCAAAAAGTGTTACAACATACCAATCGATT 1521581 25 100.0 38 ......................... ATCATGAAATTCGTTACCTATATCGCTTTGATCTTTAT 1521644 25 100.0 37 ......................... TCAATGTCAGTCGGCAACTCAGGCAACTTATTGTACT 1521706 25 100.0 39 ......................... ACATCACTGGATGCCCCAGATTTATCTACACCGAAATGG 1521770 25 100.0 42 ......................... GTGATAGAATAGTTGAGATCATCAGCCCTGACGGAAATATTA 1521837 25 100.0 40 ......................... ATTTCTCAGCTTCATGACTTCTGAATCCTATAAGATGCAA 1521902 25 100.0 39 ......................... CTCATTGCCTCCTCATCTTCTACTTTAAATTTATATACC 1521966 25 100.0 41 ......................... CCGATCCATCCCTCTCCCGGCTTCCACCACTGTAATTCCCT 1522032 25 100.0 37 ......................... GTAACGATACCCATAAATCCGATTAATTGCTTGCGTG 1522094 25 100.0 40 ......................... AACAAACGGCACACCATCACCCGTTCAACCACTAAGTTTA 1522159 25 100.0 42 ......................... AATGAACAACTTTATGATATTTTAACACAGATACCTTACGAT 1522226 25 100.0 41 ......................... ACTTTTTACTAGAAAATAAACATCTTGACGTTCTTTTTGTG 1522292 25 100.0 38 ......................... GAAATAGCCGAGAAGATGAAGATGAGCGATGAGATGAC 1522355 25 100.0 39 ......................... TCAAAAGCTAGCTTTGATTGAAAATACTGCGAATTTGTG 1522419 25 100.0 37 ......................... TTTTTCTCTGCCTCCTTTATAACTAAATAAAAATGCG 1522481 25 100.0 38 ......................... CGGTGAAAATTATAAGTGAAAAGCCTGAAATGTTTATA 1522544 25 100.0 38 ......................... TACACATATCCCAATTTCACTGGGAAATATTGTATTTT 1522607 25 100.0 38 ......................... ATGCCGAAAGTACCAGAACTACTTCCTAAGTTTGTGAA 1522670 25 100.0 36 ......................... CATTACCGTTGGTAATAAACATAGTAAGAGTATATG 1522731 25 96.0 39 ..A...................... ACGAATTTCATAATTCTCCTCCATGCATAATACTGGTAC 1522795 25 96.0 36 ..A...................... TAAAATTTATAAGTGTAATAAGCCATTTTGTCATTC 1522856 25 96.0 34 ..A...................... GCATATTGAGATTGTGAAATATTTAAACTTCCCG 1522915 25 96.0 38 ..A...................... TCTGCTTTTTCAAGATTCATTTTTCATCATGTTAATTT 1522978 25 96.0 40 ..A...................... CCTGCCCAGTGAGGGATGTCGCTGTAAATTTGAAGTTTCC 1523043 25 96.0 38 ..A...................... ATTATTAACTATCTATTAACACACAAAACCAATACCAA 1523106 25 96.0 39 ..A...................... AATTTTAACTATTTTTGGCGTAGCATCTAAAAAATCTAA 1523170 25 96.0 38 ..A...................... ACAACCTATTGTACAACCTCAAATTCATATACCGCAGA 1523233 25 100.0 36 ......................... TTCATACTGATATCGTTTGGAAGAAGTTGGGAAACA 1523294 25 96.0 38 ..A...................... GAAGATAATATTAAGCCGTCGCCAAAGTCATATTCTTT 1523357 25 96.0 40 ..A...................... ATTAGCTCGTTTTTAAGGAAATCCCATATCAAATCATCGT 1523422 25 96.0 40 ..A...................... ACTTCTTTATTTGTTATTTTATTGTTTTGCTTCTCTTCCT 1523487 25 96.0 38 ..A...................... CAAAACCCCGCTTCCGAGGGACAATCCAAACCCGTCAA 1523550 25 96.0 39 ..A...................... ACGACCGTGTTAGCTTTGTACTTCAATTCACTCACATCC 1523614 25 96.0 39 ..A...................... TGCATAGCATTTCGGGCCTCTTCCTCTTTCCAGAACTCT 1523678 25 96.0 39 ..A...................... TACAATGCCTCTACGCTATCAATTCTATTACACGCTATT 1523742 25 96.0 38 ..A...................... TTTTGTAGGTAATAATAGTACCCTTTTAATTCACTAGG 1523805 25 96.0 36 ..A...................... CCCTTTTAATTAAAATTTTATTTTTTCAACTCTTGC 1523866 25 96.0 36 ..A...................... AAATAAATTGTTAAATATATTTCATTCTTTCCTCTG 1523927 25 96.0 38 ..A...................... TATTGAAGTTTAGCGATATTATTGATAATTATCATCAA 1523990 25 96.0 39 ..A...................... GTCATCGAGTTGGAGCGGATTGACTTTTATTACTACGGT 1524054 25 96.0 39 ..A...................... ATTACTTCAAGTACCTTTGTGCCGGTTTAATTATAGAAA 1524118 25 100.0 37 ......................... AATAAACGTTTGGAGTATAAAAAAATGAATGATTCAA 1524180 25 100.0 39 ......................... TTTGTCGTTTTGTGGTTGAGGAGTAGTTACGTTTACGTT 1524244 25 96.0 47 ...........A............. AGTTTCAGCAGTACTGTTTATACTCTGTATTGCAGTAGTTGATGTAG 1524316 25 96.0 0 .......................G. | ========== ====== ====== ====== ========================= =============================================== ================== 90 25 99.0 39 GATTAATCCTAGAAGGAATTGAAAG # Left flank : CCTTATATTAGGGAGAAAGTCTTGCCCTTTAAAGTCTCAAGGAGTATAATAAAAAGTAATTCTCACGTTAAAAAAATTTTACTTTATCAGCCTTAGTGAAATTAGGAAATATTGCGTATTTAAAAGTAAGTTTAAAAAGATAATTATACGTTACAGTGAAAGAAAGATAAAAGGAGAACGATAGAAGATAAAAAGTATATATCGATATGTTACGAAATTAGTGAAATATTATTATCATGAAAAGAACTTTAAATTTCGTTTTCATTAAGTAATTTAAAAGTGTGAAGGTTCGAGTCTCAATGCGACCAAAACGAATCTTTCTATAATAATTGAACGTTTATAAATGATAGGGTGTATTTCAATTTAACATAAAATCCTTGCGACCAGAAATTGTTAAATTAATTACAACTAAAATTGGTCGCATGAAGAGTAAAGGATAGTCATGAAAATTTATAAGTGAGAAAGGAGAAAAGAAAGATAAGAAGTATAAAAACACATCA # Right flank : GTACGCAATAGAGCCTAAGTAAAATAATCCTCTATTAGAGTGAGAAAATAGCGTTTCGTTAACCATTAAGTGGTTTTACTTCTACCTCTCCAAAGCCAATGTTCCTACTCTTTCCCACGCCGAAGTAATTTACGTAATCCAATAGCTTTCTAACGTTCTCCCTTATCTTACTGCCTTTTCTAGCACTCAACTCAAACACAGCCCATCCTACAAATCCCTTATTGGGTATGTTTCCGTAATAAGTAGTCATCGGTCTTATCCTATAGTTCACCTCTCTAAAGTAGTATAACGTCTTACTACCGGTAACTCCCACAATCTTCTTATCCATATATCTATTCCAGTGGGAGGCTATGGAGTAGAAGAGAAGTGGGACGTAAGGGAATAACACATACCTGTTCTCCTTTCTTTTCATCCTAGGCCTAGGGGGTTGTAAAAGCGTAGGCGTCTTGAAGTGAACTACGTAAAACCTGGCCTCCTCAACCATGATGTTTTCCTTTACT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCTAGAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: F [matched GATTAATCCCAAAAGGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1536662-1545411 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077717.1 Saccharolobus shibatae B12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================================================================================================================================================== ================== 1536662 24 72.0 164 ....CT.T...T..-T.......C. CTTATAAATGATGGGGTATATTTCAATTTAACATAAAATCCTTGCGACCAGAAATTGTTAAATTAATTACAACTAAAATTGGTCGCATGAAGAGTAAAGGATAGTCATGAAAATTTATAAGTGAGAAAGGAGAAAAGAAAGATAAGAAGTATAAAAACACAACA 1536850 25 100.0 36 ......................... ACATATTCCTTGTTTTCATGTTTGGCAATTATACGT 1536911 25 100.0 41 ......................... AATTCTGATGCTGGAATACTTATCTCCACGCCCAATACTGG 1536977 25 100.0 39 ......................... GCGATAGCGTCAGCATTACTTGAGGATCTACAACTTGAA 1537041 25 100.0 39 ......................... TCTCTCTGTCCAAAAATACACGTGCTGATATAATAAATT 1537105 25 100.0 38 ......................... TTTTTCGTCCTCAAAATAATGTTGCATTTTATACACTG 1537168 25 100.0 37 ......................... TAAATTTCCCTACTTTACCCAATGCGTTTAAATGAAT 1537230 25 100.0 40 ......................... TAAAAAAATTAGAAATCTTACATATTTAAATGCGTCAATT 1537295 25 100.0 41 ......................... AGTATATAAAGCTTTCTATCAATTTTTACTTTAAATCTCCT 1537361 25 100.0 38 ......................... TTTTATGAAATCTTACAATTTTATATTTATGACTCTAT 1537424 25 100.0 40 ......................... GCAAATATTGGATGCAGTTACAAATATCATAACTGGTAGC 1537489 25 100.0 38 ......................... CTAAACTTCAATATTGTTCGCCATTCGGCTCATTAGAA 1537552 25 100.0 40 ......................... AGAAGCATTACAGAACCTAGGAAATCTGGGATTATCATAA 1537617 25 100.0 40 ......................... TGAAAAGATAAAAAATATTTTTTCCCTTAATCTCCACCAA 1537682 25 100.0 39 ......................... GTAGTCAATCAGCACGGTAGCGTAGCTCAACCCTTTTCC 1537746 25 100.0 39 ......................... GGAGCGATAGTTGCGATCGTTGGAGTAATTATACACCTG 1537810 25 100.0 38 ......................... TTTTGTAGCACAATGTAAAGTAATAACGCGCTATTTAT 1537873 25 100.0 40 ......................... ATTGGGAAAGATATGATAGACCTCACAACTGCTTTAGAAC 1537938 25 100.0 36 ......................... TTGACAATTTTTTCGTTCGTAATTTCCTTCTCAGAT 1537999 25 100.0 38 ......................... CCTATTATACTCCCCGCTTGCTCTATTTTAATTAAGTA 1538062 25 100.0 43 ......................... AAGGACAGTGGCGAGCTTAATATAATATTGTATACTAAACACC 1538130 25 100.0 38 ......................... GTGATATAGCGAATTGGAGGGTCTTAATGAGGAAGGAC 1538193 25 100.0 40 ......................... TTCCTCACGTTTTACGTCAACGTAATGGATTACGGCACAG 1538258 25 100.0 38 ......................... TCAACAGGGATTAAAGTTAGGTGGAGGAGCTTCAAAAG 1538321 25 100.0 34 ......................... TTTTTTCAAAGAGAGAAGGATCTTTCGCAATTAT 1538380 25 100.0 38 ......................... AGATAGTAAGTCTGAAATTTTAGTGAACTAGATGTCGA 1538443 25 100.0 36 ......................... TAATTATTTTTGAGATTGGCTTATTTGCATTCTTTG 1538504 25 100.0 40 ......................... ATCTAGCCATCCGGTATCGAGCGAGAAGCCTGAGTTTATT 1538569 25 100.0 40 ......................... AAAAAACATTACAACATTAACAACTTAATAAATCTAGAAC 1538634 25 100.0 39 ......................... TTCCTGATATTGCAATTGAAATAGCTGAAGTAAAAGATG 1538698 25 100.0 40 ......................... ACACCACCCTTATACTCACTATATTGTTACTCCCCGTCCT 1538763 25 100.0 38 ......................... TTTATCGTTTTTATGTTTTTGATTGCTTTCTCTAATTC 1538826 25 100.0 34 ......................... GGAGGGTTTGTATCTAATATTATGTGCCATCTTT 1538885 25 100.0 42 ......................... ATGCACGGAAGAAGATGAAAGGGAAGGCCTAACACCGAGAAG 1538952 25 100.0 34 ......................... ATACATTTACATTAGGAGTATTTTCTACACTGAC 1539011 25 100.0 39 ......................... ACCCTAGCTTTTATTTGCTCATCTTTTTCACTTTTTACC 1539075 25 100.0 41 ......................... GCTTATAAATGCAGCTTTTTCGGAAAAAGGAGGATTACAAT 1539141 25 100.0 39 ......................... TTTCTCATATGACGCCCTTATCATTGCCTTAGTTATAAT 1539205 25 100.0 39 ......................... ATAAAGCAATGAAAGAACTCGGAGGTAGGTTTATTCTGA 1539269 25 100.0 37 ......................... ATTCTATATGGCACTTTCTGCTTTACGCCCCAAACAT 1539331 25 100.0 39 ......................... CAGTTTTAGAGCAAAACCATGTTAGCCACCTTAAAGTGT 1539395 25 100.0 39 ......................... ATATGTTTAATGGATCCAACAACAAACGATTATGATTTT 1539459 25 100.0 39 ......................... TAAATCAGGCGAGCCAACAACAATCACAGGGAGGAGGGG 1539523 25 100.0 39 ......................... CACCATGACGACCGCTCTTACTTGTGTGTAGATGTGCCT 1539587 25 100.0 38 ......................... CACCACCTTCTAAATTTGAAAATCGCATATAAAACTCT 1539650 25 100.0 36 ......................... CAATTTTGAGGAACAAAAAGATGGCGCAGATCTTCA 1539711 25 100.0 39 ......................... CAAGTAGGTACAATGTTATCAATATTTTCAGTAAATGGA 1539775 25 100.0 42 ......................... CGTTTATATATTCGGCAGTTAACGTAACATTACCAGCACTGT 1539842 25 100.0 41 ......................... TATAGTAATCTCTTTATTGCGTCAACTCTTTTAGTTGTAGC 1539908 25 100.0 40 ......................... TATAAAATCGCTTCCACGTGCTAATTCTACTGTAATTTTT 1539973 25 100.0 39 ......................... CTAGAGAAAAAGTTAGGCATAAAAAAATAAGCATAAAAA 1540037 25 100.0 35 ......................... TTATACATTATCATTTTTATCTTATAATTTTCAAA 1540097 25 100.0 40 ......................... ACTAAAAGAGATAACACGTTTGAGTTAACTCTTTTGTTGT 1540162 25 100.0 38 ......................... TGAGTTTGGGTTGAATTTGGTTGGTTTACGGACATAGG 1540225 25 100.0 37 ......................... TAACTTGCAGTTAAGATAGCAAACGCTTCTTCATAAC 1540287 25 100.0 39 ......................... TAAAGGATGGCAAAATTGATTGGGATGGTTTAGCTCAAA 1540351 25 100.0 38 ......................... AACTGCCATGATATACTTTCATACATTGACTCAGAAAT 1540414 25 100.0 39 ......................... AATTTTCTCATCTTCTTCCAAGGCAAGCGCAAAAGCTAA 1540478 25 100.0 37 ......................... CTGGTGTCAAGCCTTCAAAAAACTTCCAATAGGGCTT 1540540 25 100.0 36 ......................... TTTATGAAGGAAAAAAGCGCGGTTAAGAATTACTTA 1540601 25 100.0 38 ......................... TTTAGTTTTCGCTAAAACTGATGAACCAGTATCTAGAC 1540664 25 100.0 38 ......................... TATATCCAAATACCAATTAAAACTTCTTTCGGCATCTT 1540727 25 100.0 38 ......................... AAAATGAAATTTGTGCCAAAACACCATGGTTCAATGTA 1540790 25 96.0 38 .G....................... AATTAATCCACATGAACATGTCTTGTTAACGACGCTAG 1540853 25 100.0 38 ......................... TAAATTTTATGAAAATTTCTTTATTTATTCTAGTTGAC 1540916 25 100.0 40 ......................... TTGACCCAACATATATTACACAAACCGGGCAGTATATCAA 1540981 25 100.0 43 ......................... TTATAGAAATTATGAAAATAAGTACAATTGTATCTACCAGAAG 1541049 25 100.0 40 ......................... TGCAAGGATTACAGCACCATCCGGCAGACTGTTAAGCTCT 1541114 25 100.0 39 ......................... TTTTAAGATTTCTAATCCAACTCTATAGGTTGTAAATTA 1541178 25 100.0 39 ......................... ACGTCATGAGTAACAGTAATTATTTTTTGAATGACCCAT 1541242 25 100.0 39 ......................... TATTGGCTAAATCCTGCACAAACAAGTTATACAACAAAT 1541306 25 100.0 38 ......................... CCATTAAACGACATCTTTACCGTGAACATTAATTTATC 1541369 25 100.0 36 ......................... TATGATTTATCTACTGGCTTTTAGTATAATTTCTAA 1541430 25 100.0 40 ......................... GGACAAATATTGGACTTGGACACACTCATGTTGAATCACC 1541495 25 100.0 39 ......................... TATATTTATATTTTTAAGCATAAATGAAACATTTACAAT 1541559 25 100.0 38 ......................... CGGTATAGTCTCATTTTTTAATTCTTCTTGTAAAAATC 1541622 25 100.0 39 ......................... AGTAGTAAAACTGCGGTATTCCACATCCCAGATGTTAGG 1541686 25 100.0 39 ......................... GTAAATAGTTTCTATCTCGCTATAGACAATATCAGTATG 1541750 25 100.0 39 ......................... GCCAAATAGTTTTTTCAAGCCACCCAAAATCTTTTCTCC 1541814 25 100.0 40 ......................... TTTAACGCAGTATTTTAAACTTCCGTGATATACTTTCATA 1541879 25 100.0 37 ......................... TTGCTAGCGAAAAAGAGATAGAGATATTTTTAGAACC 1541941 25 100.0 39 ......................... AACTTCACCATTCCGCTCCACCCCATATTCTAAGTAATT 1542005 25 100.0 37 ......................... TTATATCGAATCATACTGAAATGTATAGAAGTATCGA 1542067 25 100.0 39 ......................... GAACCCTGCGAGCTGAGCTATTTGGATGGCTAACTCGTA 1542131 25 100.0 40 ......................... AATTCTTCTATTCTATAAAAAAAGATAATATTATTATATC 1542196 25 100.0 37 ......................... GCTTTAATTGCATGATTAAATATTGTTAAATTATCGG 1542258 25 96.0 38 A........................ ATTTTGCAGACGTTTATAAGCGGTATTGCGCCTACTCT 1542321 25 100.0 39 ......................... ACTAACAATTGTTTGATTTATTAAAAGATATGAAAAATA 1542385 25 100.0 43 ......................... AGTTAGAAATTCATATAATTTTTTGAAATCCTCGGGATATAAT 1542453 25 100.0 39 ......................... CAATGATACATAAATTACACCTTAATCAACGTCAAAGTA 1542517 25 100.0 43 ......................... AAACAAATCTACTTTGACAACATTACTTTGTTCTACACTACTA 1542585 25 100.0 38 ......................... TATTTTACGAGTACCTACCAGCCCAACAAGAAGAAATA 1542648 25 100.0 39 ......................... TGTAAGATTGTTAGATTGCCTAATTTATTGATAAAGAAA 1542712 25 100.0 40 ......................... ATAACCCCATTTATGATGGGATCTACGATCGGATCGGATT 1542777 25 100.0 37 ......................... ATTTTCCTTAACTCTACTAGAAATGACCCATTTAATC 1542839 25 100.0 39 ......................... TCCGATACTCCAGTTCCATACCATCCATCTTTTATAATT 1542903 25 100.0 38 ......................... AGATATTCTATTTCAGTATTGTCTAATTTCACCGTTTC 1542966 25 100.0 39 ......................... CAACTTGACTTATATGCACAATCTTCAACATTATTAAGT 1543030 25 100.0 39 ......................... TTATCAAGTTTTCAATTTGCGTTGATTGATATTTTATCA 1543094 25 100.0 36 ......................... AACGTATACTGATAATACCGGAAATCAGCAAACAAT 1543155 25 100.0 37 ......................... AGTAGGTGGCACTGTCAGGGACATTATACAAGGAAAA 1543217 25 100.0 38 ......................... CTGTTCCTGTTGGATTGCACTATTAGCTGCAGTTGCAG 1543280 25 100.0 38 ......................... CGATATATACGTCATACTTCCCGTTATGTCGTTCTATG 1543343 25 100.0 39 ......................... GTGCAGTTACATCCATTGACCTAGCATCAGCTATACTCA 1543407 25 100.0 41 ......................... TGTATTATATTCTCGAACGTCGTAGGTCGTGCAATAATAAT 1543473 25 100.0 39 ......................... ATTGAAAGAACCAATTGAACTTCCTATGCTAGTGCTTCC 1543537 25 100.0 37 ......................... GCTTTTGTTTGCTATTGCGGCTTGCATAGCAGTAGCA 1543599 25 100.0 40 ......................... GGAAAGATAGCATGCCCGTAAAGCTATCGTTAAACAGAAT 1543664 25 100.0 43 ......................... AGTTAGAAATTCATATAATTTTTTGAAATCCTCGGGATATAAT 1543732 25 100.0 39 ......................... CAATGATACATAAATTACACCTTAATCAACGTCAAAGTA 1543796 25 100.0 41 ......................... CATATCTCCTCAGCTCCTTTACTTAGTGCAACTTCATACTT 1543862 25 100.0 38 ......................... TAATACCGTTTATAATATCGTTTCCTAAGCTTGAAAAG 1543925 25 100.0 41 ......................... ATGCGTAATATTGATATGCCTTTGGGTAATCCATGTACAAT 1543991 25 100.0 38 ......................... ATTACATTATCTCAACTATTACAATGCAGAAATCGGAA 1544054 25 100.0 38 ......................... AAAATCTCAAACAGAAAAACGTAGTCAAATGTGTTGTC 1544117 25 100.0 40 ......................... TATAGTTAGTATTGTTAGTCGTAGTTTCCTCTTGTTGTTG 1544182 25 100.0 40 ......................... TCAACCTCTCAATCATTTTGTTCTTTGACATTGTATCTTT 1544247 25 100.0 39 ......................... TATACGTAGATCTACGCCATTTTCGCGAATTGTATCATC 1544311 25 100.0 39 ......................... CAAATGTATAGTTTTTATCTTTTTTCTTAAAAAACATAA 1544375 25 100.0 39 ......................... ATAATCTCTTATACATTTCCCTTACTCTTTGTGGATTAT 1544439 25 100.0 39 ......................... TCATAATACATTTTAATGTTAATGTATTCAAATTTATGC 1544503 25 100.0 36 ......................... TTAAACACCATATTTCTCTTTATCACCAACGCTCTG 1544564 25 100.0 38 ......................... AAATTGTAGCAGAGAGCACTAAAAACCATGTGCCCTCT 1544627 25 100.0 37 ......................... CAAATTCCTTCGGTGGTATGATTTTGTCCTTGCTCAG 1544689 25 96.0 37 ..T...................... TTTATTATACGAGGTGCCTTATCTGCAGGCAAATTAG 1544751 25 100.0 38 ......................... AGATCTTCCAGTTGTCTAAGCGAATCGTTCACCTTATC 1544814 25 100.0 35 ......................... TTTTCCCCCTCCTCGAATGCGAAATCATTAATTTT 1544874 25 96.0 39 ..T...................... ATCGTTACAAGAGTGGAATAATTTCGTTCAGGATTTACT 1544938 25 96.0 42 ..G...................... GAATAATCAGTGTATTTAGTAAGAAGATACTTGAAGGACTTA 1545005 25 96.0 40 ..T...................... AGAATTTTATCATTATACGATTTTCCAAATGTTATACCAA 1545070 25 96.0 38 ..T...................... ATTTATCATAATCATCATAGATTTTTACTAATACACTT 1545133 25 96.0 41 ..T...................... TTGTACTAGTCTCCATAGGAATCCTCTCCACGTGCTAAATC 1545199 25 96.0 36 ..T...................... TTACTGTCAGAGCAAAATTAGAGAATGGTAAATTAG 1545260 25 96.0 39 ..T...................... CCACTCAAAAATATCGTCATCTTCTTCCTCTTCCTCAGT 1545324 25 92.0 38 ..T..............T....... AGCAAAACCGCTATAATTGCCGATTGGAACTGCTTGAG 1545387 25 96.0 0 ..T...................... | ========== ====== ====== ====== ========================= ==================================================================================================================================================================== ================== 136 25 99.4 40 GAATAATCCTAGAAGGAATTGAAAG # Left flank : CTTATAGTCTAAAGGGCAACGACATTTCTAAAATTACACAAAAACCTTATATTGGGGAGAAAGTCTTGCCCTTTAAAGTCTCAGAAAGTATAAATTTTATCGTACGAGAGTTTAGTAAATCCTGCTTAAGGAAATTCAACTTTTAAAATTCATGAATAAACCATCCCTACAAGAAAATTTATATTTCTATGTGTAGATTAAAAAAATAACCACAAGAGGATTCCTTATTTTTTAATCAGTATTAATATTATATTTGTTTAAAAAGTTTTCACCAATACATTTCTGGATTAGTCGTGGAATTAACGTGATTATAAGTCTTTTTAAAAGGATAACTATACGATAGAATGAAAAACAATTATACTAAGAAGCGCATTTACTAAATTATTGCTTATCATCCGTAACGATTTTAGAGATGTAGAATAACTAAGATGTTACCTAAAAGTTCGTTTTCATTAAGTAATTTAAAAGTGTGAAGGTTCGAGTCTCAATGCGACCAAAAC # Right flank : GAACGTTAACTTAAATTTGCCTACATGAGTTATATTTTTAGTTAAAGGGTTGATAAGATAATGTTAGATAAGAAGATTGTTTTCGTTAAGGATTGGGGGCTTATGTTAGAGTTAGTAAAGATATGATAACTTGTGTGGTAAAGGATGGTTAAATGGTCTTTATCTCCAACTGAAATATCATCAATTATAATTTTGACTAATTCCTCAATATATTCAGAGGTCATAAATTTGGCTAATCAGTACGGTATAGAAATAGTGTTCTTTAAAGGTAATGAGCCTATTCCTAAAATAATACCCGCATCTTATGCTGGGTCTTTTAAGTTATGGTTAAGGCAAATAAGGGCGTGGAAGAGCAAGAAGGTTAATTTAGCTAGGGAATTCATATACGGTAAACTTCACAATCAATGGGTTACGTTAAGATACTACGAGAAGAAATATAATATTAATTTAAATTCCGGCAAATTATTACAGCTTGAAAGAGAGGTATTAGTTGAAAACAC # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATAATCCTAGAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: F [matched GATTAATCCCAAAAGGAATTGAAAG with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1565795-1561211 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077717.1 Saccharolobus shibatae B12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 1565794 24 100.0 40 ........................ TGTGCGAATCTTTGCGATCCTAATGTAGCGACACCTTGCT 1565730 24 100.0 38 ........................ AGAAGATACCCTAAGATAGAACCCACAAAAACTCCAGC 1565668 24 100.0 39 ........................ GAAATACATTCAGTAGAATACGATGAGGACACTGGAGAA 1565605 24 100.0 39 ........................ CCTAGCAACAGTCTCCAGTATAATTTCGTTTCTATCTAT 1565542 24 100.0 40 ........................ CCAATTCTTCTAGCGATGGTAGATTCGAAAGAGAGTCTAT 1565478 24 100.0 38 ........................ CCCCTAAGGACGGGAAGGAGGTCAGCCCTACTCAAAAG 1565416 24 100.0 38 ........................ TTCATTTGGAATAGGTAGCAATGTCCTTTCGTGGAATT 1565354 24 100.0 39 ........................ ACATCCGTAAATATCGTTGCTTGATGCGTATTTGTTCGT 1565291 24 100.0 40 ........................ ATGTCACCTAAGTTTAAGAGGAAGGACATTACTATCTATT 1565227 24 100.0 41 ........................ ACCCATATTTACGATCACCCCGAAACAAACTGAAATTCCAC 1565162 24 100.0 39 ........................ GCTTTTTCTGTTGGTTGGGGTATTTCTTCTTGCTGCGTC 1565099 24 100.0 41 ........................ AAGTGAAGTGGACTAAATGGCAGCAGCTAACGAGATATGTA 1565034 24 100.0 38 ........................ TTAGAATATGATATTGACATAATACATGTCAATTGTAT 1564972 24 100.0 38 ........................ AACAGACTTGGCAAGTTTGACACTTTAATAACTTACAG 1564910 24 100.0 38 ........................ GAAACAAACTGAAATTCCATCACACCGGAACAAACAAA 1564848 24 100.0 40 ........................ ATAATTGAAAATGGAAAATTTCTAGGATGGAGATACTTAA 1564784 24 100.0 42 ........................ CTCTATTTTACTTGCAAAGTCCCGATCCACTTTGCTTAAGTT 1564718 24 100.0 42 ........................ TACAATCAGTTTATGTTAACAGCACAGAGTACGTGTTAAATG 1564652 24 100.0 38 ........................ GAAAAGCGGAAAACCGTTAACGTATAAGTTACACACTT 1564590 24 100.0 38 ........................ CGCTGCGTTGGGCGCCAAATTGTTATTCTTTAATATAT 1564528 24 100.0 38 ........................ AACCAGTACGAACAACAACTTCAACTAGCGCAGTAATG 1564466 24 100.0 41 ........................ GCGGAATCCCTAGTCTCTTCACATCTTCCCCTAATCTTACT 1564401 24 100.0 39 ........................ TACTACAATCCTTCAAATATTGATGTGTTCAAATTTTTG 1564338 24 100.0 37 ........................ ATAATCGCCTATTGCCGACCTTTAGCAAAACCTTCTT 1564277 24 100.0 38 ........................ TAACTACAACATCAGGTAGTATCACCATGTCCTCCTTA 1564215 24 100.0 39 ........................ TTTTTTTAGTTCAGCCTAATTCTTCATGGTAAACGACTT 1564152 24 100.0 39 ........................ ATAATTCAAGAAATCTTGGTAAGACAATGACCTTTCACC 1564089 24 100.0 38 ........................ TCTCCTCGGTCACATTAGTCAACCTTACTTCGCCTTGA 1564027 24 100.0 39 ........................ GTAAGAGTATAACTTATTGGATTGCCAGCGTAAATTATC 1563964 24 100.0 38 ........................ TTTCAAAATGTTTTCGGTGGCATAAGACTTTTAGTAGA 1563902 24 100.0 40 ........................ AAACAAGTAGAAGTTCTAAGTGTGTCAGAAGTCCCAGCGA 1563838 24 100.0 39 ........................ TCTTATCAATCATGTCCATCAAATCAGCATTAGATATTT 1563775 24 100.0 38 ........................ TCAGCGTCACAATCACAACAACTATCGCAATGTATAAC 1563713 24 100.0 41 ........................ GATATAATAAACGACATTATCCATTTACCTCCATTGCATCA 1563648 24 100.0 37 ........................ TTGGGGTGCAGGGAAGTGATACATTAGCAAATAATGC 1563587 24 100.0 40 ........................ ATTAAAAAAGGAAACGATTACTTAGAAAGATATATCACCT 1563523 24 100.0 38 ........................ CATCATTTCTTACAACCTCCTCGATATTGTATAAATTA 1563461 24 100.0 42 ........................ CCTATGGAATTACAAAACAGACAAGAAGTAACAACACCTTGG 1563395 24 100.0 40 ........................ ATCAAGTTACCGCTTAAGTCGGCAACAGCTAAGATGCTAT 1563331 24 100.0 38 ........................ ATTAGGAACGCAATCAAAGACATACCGCTTAATCTACT 1563269 24 100.0 38 ........................ ATTCAAGCTGGAGGTACTTCAGGTTCACCGCCATACTA 1563207 24 100.0 41 ........................ TATTACGATCCCTCCAGGACCTATACTCACACTAAGAGCTT 1563142 24 100.0 39 ........................ ATAAGAATTCTCTCGTTCATGCCTTTCGGTGTCAAGAAT 1563079 24 100.0 40 ........................ GTAAAGCACAAGTTAGTAGTATTCGATGAAGCTCATAACC 1563015 24 100.0 39 ........................ TCTTATCAACACTCCTATATACGGTTTCCTTAATTTCAG 1562952 24 100.0 41 ........................ ATATTGAAAATGCGGTACAAAGCGCACTGAGTAATGCCGCA 1562887 24 100.0 40 ........................ TATGTAAGCCAATAAGTGTTGTTACATCATGTATTGTATT 1562823 24 95.8 38 ..............A......... AAAATCAGGCAGAGTACAAAGTACCACCTTATTCACAA 1562761 24 100.0 40 ........................ TATGAATCTCGCTTGTAAGCATTGTGGTACGCCCGCTGCT 1562697 24 100.0 39 ........................ CTAGAGATCGTCAGGAGTGTTATAGGTAACAGAAAGACG 1562634 24 100.0 40 ........................ ACCGGTATAATAAGGATTTTTGAGATCTCCTTATCACTGT 1562570 24 100.0 38 ........................ CCTTTTATAGTGAAAACTGCTACCTTCATCGCTTCTAT 1562508 24 100.0 41 ........................ TACCAGTAAGCAGTTAGGGTAGGGTAAAGATCCCTTTCATA 1562443 24 100.0 40 ........................ TTCATCATCCAACCCTGGTCACCTTAAAGTGTCTACGTAT 1562379 24 100.0 39 ........................ CCTCAGTCCGTACTACAGCCGATATTCCCTATAACGAAT 1562316 24 100.0 41 ........................ CTAACATAAACCCCTCCGCTAGATAAAATTCCCTTAATCTT 1562251 24 100.0 42 ........................ TTTAGTAGTAAATATGATGCTAACAACTTAGGCATTTTTGCT 1562185 24 100.0 40 ........................ TTGGGGTTACCTTTTGGGTTTTGGGCTTGTGCCAACTTTT 1562121 24 100.0 39 ........................ AGAGTATGCTTCGCCATTTATTATCTATTATAAAAAAAT 1562058 24 100.0 39 ........................ TTGAGGCTGGCACAAATTCGCAATATTTTCAATCAAAGC 1561995 24 100.0 39 ........................ AGTTGAGCAAACGCCGTAGCATAATGCGGTACAATATCG 1561932 24 100.0 38 ........................ CTCTATAAGATCTTCAGCTTCTTTTAACGCTTGTTGAT 1561870 24 100.0 42 ........................ TTGGCACTACTTCGGTTGTTATCAACTGACCCGTTCCGCTAG 1561804 24 100.0 40 ........................ AAAGCCGCGCCGAAACCTATAGCAAATAGCATAGGATATG 1561740 24 100.0 41 ........................ AGGTGCTTCTTGATATGATTTATTGAGCATTATATTCAAAG 1561675 24 100.0 39 ........................ AACGCTATATACACATATACACATATTATAAGTTACTCA 1561612 24 100.0 39 ........................ TTTTTAGGCGCTTTTTCGGTAGCTGGTGGTATTTCTTCT 1561549 24 100.0 38 ........................ TCATCTTACATCACATGAATATAAACATAACTATTTTT 1561487 24 100.0 40 ........................ AGCAGTGCTGATTGAAGAGTTTGTCTGCTTTGCAACGCTA 1561423 24 100.0 40 ........................ AATGTTGTTAGAATGGACAACTGGGAAAGAAACAAACGAA 1561359 24 100.0 41 ........................ TTTGACGCTTGCGATATTAAAGTTGTTACTTTATCCGTGTC 1561294 24 100.0 36 ........................ TTATCGAGCTACATAACACAAGTGTACACGTATTAT 1561234 24 95.8 0 .......................A | ========== ====== ====== ====== ======================== ========================================== ================== 73 24 99.9 39 GATAATCTACTATAGAATTGAAAG # Left flank : GCTTTACGGGGGGCATGTGGTAGTTCCACCCCCGTAGCTCCTCCTCAATAGGGTCTGAAGCCCTATATGAGTGGAGCCTCCGTAACTGTCTAACTATCTGCGACCTCATAATATAATAGTGTGTGGTAAATCTAAAAACCGTTTTAATGAGGTAGAGGAAAAAGTTCCCAGGTTTACTAGGGAAAGCCCTTAAAACTATGGTAAAATCTCTACATAAAGATTAATCGTGGAAAAAGGGAAAAAGGGTAATCTATCGTTGAGGAAAGTATATAGTAGTTTTGTATTTTCTGTCCCGTTTTTGTAAGTGAGTTTCCTTGATCGTAGTTCTCTTAGGAGGCAGGGCGTTAGCCTAAATTCATTACCTTCATAAAGGAATCCTCATCTTCCCAGATTTAGTAGGGATTGCAGAATTTGAATGAAAAATTGTAAGCCTAGAGGAAAGTAAAGCTTATAAATAGAGAAGAAAAATAATAGTGTAGTAAAGGATTAATAAAGCGTCA # Right flank : ATATCCCAATTCATTATCCTTGTAGGTATAGCTGATTTCGATGATGATAATTCTTCCAGAATAGGCCAATTTAATAAATCATTCCAATAGTCAGAACATTTATATATCATCCAGACTAATTATATATAATGGAGACTAAAGTAAAGGTAGGAAAGAAGTTAACAATTCACATACCTAAGGGTATTGCTGAAGAACTTAACATTAAAGAGGGCGATATATTAACTCTAAAGGCTAAGGATAATGAGATAATTTTAGAGGTTAATAACCCAGTTTTGCTATCAATAAAAGGTAAGAAGTTTGCTAAAATTTCTCCAGATGAGGTAGAAAAGATAAGTGAGGAGGGGCAAGGAAAGTACGAGGATTCTGATTGATACCAGCTTCATACTACTTGCATTTGGAATAGACTTAGGCGAAGAGGATTGGAAGACATCAAAAAAAAAAAAAAATTCCGAACCACGAAATATACTTTACGGAGTTTTCCCTAATTGAAGCAATGTGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 4 1570267-1577281 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077717.1 Saccharolobus shibatae B12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 1570267 24 100.0 39 ........................ AAAAGGGCCTATCGTATAAATACGTATATAAATCCAGAG 1570330 24 100.0 39 ........................ ACTTTTCTAAGTTCATGAACTACCTCTCCTACAAGGCTG 1570393 24 100.0 37 ........................ ACACAATCTCCATCATCCTCACCATCAACTTCTCCAA 1570454 24 100.0 42 ........................ TGATGTAAATTCATCAAATGGTGGCATTAATTGATGAATTAC 1570520 24 100.0 39 ........................ AAAGACTAAACACACTGATAGCTATAGTAACTGGGCTAA 1570583 24 100.0 42 ........................ TGACATTATTACCTCACCACAATTCTGTTTGGATAGTTTCTA 1570649 24 100.0 40 ........................ ATTACTTTCTAAAGTAGAAAGCGATATTTAAATCTTTTGC 1570713 24 100.0 44 ........................ TATGGTAAAGTGTCTCCGGTACCCACATAGCCTAATCCCGCTAC 1570781 24 100.0 41 ........................ ATGATATTTAGCCTAGGTTTTGCAGCGGCATTCGGATTTTT 1570846 24 100.0 38 ........................ AGGGCAGAATGGGCATTGCCATTCAACCAGAACTGGGG 1570908 24 100.0 43 ........................ AATTTATATAGGACGATCCCCGTAACAAAGCCAGTGACAACGC 1570975 24 100.0 41 ........................ GAGTTAAGTATAGCAATAGGGGCTATTTGGGAAGACTTACA 1571040 24 100.0 39 ........................ ATTTGCTCTTAAAGCAGTACCGCATAAGATGTTAACCAA 1571103 24 100.0 40 ........................ ACAAAAACTCCGGCAGCCATATATATTAGGTGTTTTACGT 1571167 24 100.0 40 ........................ GTCAAGGATACTATAACATTTTCGTGTGGATTGATGATAA 1571231 24 100.0 39 ........................ GCATCAACGAGTCTTCTTATACGTCTATAAGCCACAAGT 1571294 24 100.0 39 ........................ ACAGTTGAAAAGAAACTCTTTAGGTCGTTCCCTACGCTT 1571357 24 100.0 38 ........................ GCGCTTCAAGGGCTGGGAAACAATATAAGTAGTTTCTT 1571419 24 100.0 37 ........................ TATTTATACTTAGAGCTCTTTGAGATCATTTCCGAGG 1571480 24 100.0 40 ........................ CACTGAAACTGAACAAACCAACCAACGTCACTAACAGCCT 1571544 24 100.0 39 ........................ TCCCTTGTGGGTTACCTTTTGGGTTTGGAGTGTACGCCA 1571607 24 100.0 39 ........................ TCTGTAAACTACTAACTGATAATTCTGGCTATGATCCTT 1571670 24 100.0 37 ........................ TCAAAAACATCCATCATTGTCTCAAGTAATGTAGCCC 1571731 24 100.0 39 ........................ CAAAGGATAATGTTGGCTTTCGGGAGCTCCCTTGGTTGT 1571794 24 100.0 37 ........................ ATTTCACTCTGTAATACTATTGTTCCCGCGGAAGAAA 1571855 24 100.0 37 ........................ ACTAAAAGGGCACCCACTATCAGACCCGGGTTTCCCG 1571916 24 100.0 37 ........................ AATAACTTTCCATTATCTTAAGAAGGTAATAGACCAA 1571977 24 100.0 39 ........................ ACCCTCCTGCTTCACCTATTGCACCTAACACACCACCTT 1572040 24 100.0 41 ........................ ATCAATATAGAAGAATTAAAGGGATTGGTGAAAAAGTATGT 1572105 24 100.0 39 ........................ AGCTCTCTTCGTCGGTCTGGGACGGGACTCGAAAAATTA 1572168 24 100.0 42 ........................ GCTACTGATTCTTCTACTACAACATCCACGCCAAATGTCCCG 1572234 24 100.0 39 ........................ CTTGATACATAATCTGCAATAAGCGTGTACAAGTCAAAT 1572297 24 100.0 40 ........................ AAAATGTTTATGCCGTATTGGCAAGATGACATAGCGTCAC 1572361 24 100.0 41 ........................ AATGACTTTATATTATCGTAAACTTGCCCAAAAATACTTTT 1572426 24 100.0 39 ........................ GAATTTGGATTTGTTTCAGGTGGAACGTGGGATGGAACG 1572489 24 100.0 38 ........................ CTTTCTAATGCATTCGCTATCACTGAAAATGTAGTTTG 1572551 24 100.0 40 ........................ TATTGTCTTAGGGTTTATCAGCGTTGTCGTATATAATAAG 1572615 24 100.0 40 ........................ TTGATATATTTCATACGCTATTATATGAAGTGTACCGGAG 1572679 24 100.0 39 ........................ TAAATCGTCTTTTACTGAAGTTGAAAAAATCGCTCAATT 1572742 24 100.0 40 ........................ ATAAATTTTGCGATTGTTAAGATTTTTTCGTCTCGAATAT 1572806 24 100.0 39 ........................ TTGTCAAAATTAATACGTCGTCAAATTTGAGTGGTATAT 1572869 24 100.0 39 ........................ AACATCTCCATTATTTTGTCTGAAAACTCTTGAATGTGC 1572932 24 100.0 40 ........................ AAAGTACCCAGGGAACTACTAATGGTAAACTGGGGAGTTT 1572996 24 100.0 40 ........................ ACAGTAGAGATTTACCCTGGACTTGCATTACCTATAGACG 1573060 24 100.0 40 ........................ ATAATGACTGGCGTCAATCAATATCTACTTCAAGATATAA 1573124 24 100.0 40 ........................ CTATCTATAAGCGTTTCATTTTTCCACCAAATTTCATCAA 1573188 24 100.0 36 ........................ TCGCATGCCAGTTCTTCTGAACTCGAAACTTAGTTT 1573248 24 100.0 42 ........................ AGTATCAGAGGGCAATGCATTGCTCTTAGAGTATGAGCCTAA 1573314 24 100.0 38 ........................ AAACTATTGAAAAGAGTATAAAAGAGCTTATAGACCGT 1573376 24 100.0 39 ........................ TCACTACCAAGTTCTACGACCCTTCGAACGGCAGATTCG 1573439 24 100.0 39 ........................ CTACTTTCTGCTATCTTCATAATTCTCTCTAAAACTTGT 1573502 24 100.0 41 ........................ TTAGGTGTTATTGTACTAGACCAATTTACTTGATTTTTTAT 1573567 24 100.0 39 ........................ TTATGTGTTTGTAAATGTGACTGTAAAAAGTAGTTTAAA 1573630 24 100.0 38 ........................ AATTCAAACCCCAAGGGAATAGGGAGTTTTTCAGGAAA 1573692 24 100.0 40 ........................ GTTAGTATATCTTGTGTGATCACTTTCAGGGCGTCATAAG 1573756 24 100.0 41 ........................ TTTTTATATATTCGTAGTTTTCGGTTATGTATTTTACTCTA 1573821 24 100.0 39 ........................ CTGTATTGCTGTATAATCTCAGTAGTATACTCATTTTCT 1573884 24 100.0 40 ........................ CAGCCCATGCCATAAGTGCCTCACATTCTTCCACAGTAGT 1573948 24 100.0 41 ........................ TAAAACTTTCCCTTTTCGGATAACCTATGAATAACGGGAAT 1574013 24 100.0 40 ........................ ATATGGAACTTTGTTTCCTTCTTCCTCTTCCCGTTTCCTC 1574077 24 100.0 36 ........................ ATGCTTGTGCAAGCTCGCTAGGGTCTTCATATCCGT 1574137 24 100.0 39 ........................ GACATTTATGTGTATCCAACAAGGTATCCGGAGCTGAAT 1574200 24 100.0 39 ........................ ATTTTTCTCCACTAAAGAAACTCTTTAATAAATTCATGA 1574263 24 100.0 37 ........................ TGTTTATTCCTATCTCGGTCTCCGAAGAGGAACCAGT 1574324 24 100.0 41 ........................ TAAGAAACAACGGAATACCCCACAGATAATCAGTATACCTA 1574389 24 100.0 42 ........................ TTGGGAACTGTTAAAGGATTATCAACTATATCATCTATTAGG 1574455 24 100.0 40 ........................ TTCTCTTTTCTCTTTGGAGAGAAGAACAGACGCTAACGTT 1574519 24 100.0 39 ........................ GAAGGCTAAATGTTTCATAATCTATGTTAGGCGGAACAT 1574582 24 100.0 41 ........................ TAAAAAATCACTTCACTTCATTATTTTCTTGTGGTCACCGG 1574647 24 100.0 38 ........................ GATTTACGTGTGCCGACACTTGAGGAAATACGTAAGAC 1574709 24 100.0 38 ........................ AGTTCTTTCAATTTTTCTCTAATAGCCTCATTGACAAA 1574771 24 100.0 44 ........................ ATGATAGCATCATACTGCTTTATATGTTCCTGCAACGCTTTGAG 1574839 24 100.0 38 ........................ AAATTCCTTTTGCCGAATTTATTAGGTGCTGATAACGT 1574901 24 100.0 40 ........................ GCAATATCAGTACTAACAGAAAGTGTGAAAGCACTAGGTG 1574965 24 100.0 39 ........................ TCCCTTTATCCTTGCCCTAGTATTATAATGTTGTAAGAA 1575028 24 100.0 38 ........................ TCAACTTCTACGCTCTGATACAGATCATATAATTTCTT 1575090 24 100.0 39 ........................ CAAATGAGCATCAACATAAAGGCTTTCCTCATTGATTGT 1575153 24 100.0 41 ........................ AAGGGACGTTTAAGAGGGGTGGCGAATGCACTTCACTTAAG 1575218 24 100.0 40 ........................ CCGGTACCTCCGAAACCACCATCAATGATAGGATTTTCTA 1575282 24 100.0 39 ........................ TTATATCATTTCCTAGTAGGGAGATTTTTGAGGAAGTAT 1575345 24 100.0 40 ........................ ACTTTCTGTAGCGGAGGCAGCGTTATTAAAGGAAAGGTTG 1575409 24 100.0 40 ........................ CAATATGCCAGGATAATAAAGAAGATAGCGGTAGATATAG 1575473 24 100.0 41 ........................ TTGTGGCAAATAGTACTTTACAATAAAAGGACTGGTGAGCC 1575538 24 100.0 41 ........................ AAGGTATTTAATCCATAACTAATGACAAATTGCATAGTGAT 1575603 24 100.0 40 ........................ TCATTAGGTATTGCATTTAATTGTAAAACTATACTGTCGG 1575667 24 100.0 39 ........................ TATCTGACAAAAAACTCACCTCCTATGCTTGTGATGCCT 1575730 24 100.0 39 ........................ AAATGGACTTCGATTGTCTCGCTAACAAAATAGTGAATC 1575793 24 100.0 42 ........................ ATCCTATTTTACGTCGTTCTTCGCTCTTTTCTGTGCCTCCGG 1575859 24 100.0 38 ........................ ATTGTTATCTCTTTGCATCTTATAGACTACCTGAGAAT 1575921 24 100.0 38 ........................ ACGACATGCCAAGCCGTAATTAAGTAATGAGCATCTAC 1575983 24 100.0 39 ........................ ATTAGGGCATATTCTATAGCTTTCTGCTCTGATAATGCA 1576046 24 100.0 40 ........................ GTTTTCCTTAAGTCTTTCAACACTTTTATTACTTCTTTTT 1576110 24 100.0 40 ........................ ACTTACTACCGGCATTACGGACAGCAATTCCACCCACTTT 1576174 24 100.0 39 ........................ AACCACCAGCCTATCCCAAGCATTGCGATTGCGATAATG 1576237 24 100.0 41 ........................ TTCTCATTTCCCACCTGCGTTCCATAACTCTTCCATTTCTT 1576302 24 100.0 41 ........................ TGCTTCTTCAGCAACTCGTACACTCTAAGGGCTTCCTCCCT 1576367 24 100.0 39 ........................ ATTGCTTGAGCTTCATCAATAGGCTCCATTTGCTTTCTT 1576430 24 100.0 40 ........................ CTCCTTTTTAGCCTTCTTTTGCTTAACGGGCATATTATGG 1576494 24 100.0 39 ........................ ACGTCTTACGTCTACTACGTAGCGAGATATGGCTCAGGT 1576557 24 100.0 41 ........................ CGTCAGTCTCTCCCTTAAACAACTTCATTAGCTGATCCTCT 1576622 24 100.0 37 ........................ AGTGAGAAATACTTAAGAGAAGTATGGGGATTGGAGA 1576683 24 100.0 39 ........................ CAAAGTTCTAACACAAACCAACCCCAAAACCCTAAGAAA 1576746 24 100.0 39 ........................ TAAACCTGAACCTTTCCCTTAAGCCCTTAGTTACTTCAT 1576809 24 100.0 41 ........................ TCAATCATAGCGTAAGTGTTTTCCTCATCTATTTCTACTTC 1576874 24 100.0 40 ........................ CTAGCTATACTGTAACTTTTATAAGTCCCGGAAAAGCCGA 1576938 24 100.0 41 ........................ GATGAAATAGTATCAGGTATTGTGGTAGTTAGGAACGTATA 1577003 24 100.0 40 ........................ GCATCAGGTAGCGCCGCTACTGGCACGGTAGTTGGTCCCG 1577067 24 100.0 39 ........................ AAATAGAAATCCTCCAATTAAATTTGCACTATGTTGAAT 1577130 24 100.0 39 ........................ ATTATATCCACCGAGCTGGAGAATTACGTCACAACCCAA 1577193 24 100.0 41 ........................ GACGATATGGAATAAGTCAAACCACCATTTCCGATATATGG 1577258 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================ ================== 111 24 100.0 40 GTTAATCTACTATAGAATTGAAAG # Left flank : TATTTCGTAAACCCTCGGAAACGGATAGTTTAACCTTGAAGTTTGAGCCCTTAAACTATCTATTGCAGTCCTAGTTCCAGAGATAATTGGAGAGGGAACAATGATTACAAGATTATCTTCTTTTTGTGCCGAAGTTTCATTTAGAAGTCTCAGCAGAAAAGTTTCATTAAATCCCATGGTGACAAAATATGACTTCATACCATAGAATTGGTATTACCACCTCATAAATCTTTCTATAACTTAAGAGCTAGTTGTTGAGGTAGGTATTTTGTAGTTTTGTATTTTTTGTCCCGTTTTTGTAAGTGTTGTTTCTTTTAGGTTTTAAGGAGGGGAGGTAGGATGTTGTCCTTAAATGATTACCTTTATGAAGAATATCTTGTTGTCCCGGGTTTAGTAGGGAGTGTGAAAACTATTAGAAAAATTGAAGATATGAGAATGAAGTAAAGTTTATAAGTAAAGAAGAGAAAATAAGAGTGTAAATAGAGATTAATAAATCCTCA # Right flank : GATTATCGTTCCTATCCCTTGAAAATACGTGGGGTAAATGACGTTCAACAAGGAAAGATTATAATCAACCATCCTACCACTCCCATTAACAGCCCTAGTATGCCTAGCTAGCCTAGCTAGATGAGCTCTACAGTAAGAATTATAACTCTCCACAGTATAAGTATACTCCTTACCTACAACGTGGTTATCAAGGACTTGATAAACGTTGTAAGCATCAGTATAATATACCTCACTCCTAGGTAGGGAATTCTGAAGAAAGTTAAAAGTCTCATAACCCCTATTGCCAATAGCGAAGAAGAGGAAACCATTTGCCAAAGCATTCCATATCCACAAGTCTACCCTCTTCGGGTCGTGCCTAACCCTAACGTAAGTCCAACTCTCATCAAGTGCCGTGATCTTTGCAGTAAAGCCCTTTAGTTACTCTTATAATACTAGTAGATTAACGTATGCCTCTACTCTTTCCTCTTTATTACACTGTGGCTAACGCTTTTCCTTCAACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA //