Array 1 9025-9275 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQPI01000208.1 Leptospira interrogans strain 56625 Contig208, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 9025 36 100.0 35 .................................... TTAACAACCATATCTGTAGTCTTATATGCAATTTT 9096 36 100.0 36 .................................... GCGGGTGCGGTGATTTTAAATCCGATTTTCCAACAA 9168 36 97.2 36 .....................T.............. ATGCGGCGTTTTTTTCTCACCGATTACTTTTAATCG 9240 36 97.2 0 .....................T.............. | ========== ====== ====== ====== ==================================== ==================================== ================== 4 36 98.6 36 CTGAATATAACTTTGATGCCGGTAGGCGTTGAGCAC # Left flank : GAAAAACTACGGTGGAAATTGGCAAAAGTCACCGAAGAAGAAGACAATATATTTTATCTGACTCTTTGCACCAAGTGTGCTTCGGGCACCCATACCCAAGAAAAAAAATCCGCGTGGCCAGAAGCTCCAAAAACATTAAAAATTCTATAATTCAAGTATCTCTTCAGGGCATAGACATAATTCTACTTAAAAAGCAAAACTAAATCTTTGAATCTATATTTAATTCCAAGACATATCCAATCTTTACTCGGATTCAGAAATAGACCCTATCTAATGATTGGCCAACGCTCGTTTTTCTTTCTTGTGAAAATTCCAGCTAAATTTATAATCGGTGACGAGCTTAAACATACTTGAATCTTAATATTTGAAACAAAATGATCCTTGGAAACAAAATATGCACTTCTGAAAAATAACGATAAAAAACGATATACTTGTTCTCCTCCTTTGAAAACACTCATATCCACAATTTATGCTTATAAAAGCCATTTAAATAAAATGCT # Right flank : AGTTGGCACTTTTCGC # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAATATAACTTTGATGCCGGTAGGCGTTGAGCAC # Alternate repeat : CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 553-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQPI01000434.1 Leptospira interrogans strain 56625 Contig434, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 552 36 100.0 34 .................................... TTTGGAATGGCCAAACTTTTCGGCCGAGGTTTTA 482 36 97.2 36 .....................G.............. CCGGACTATCGAGAAAGTTGAGTGAGGCGGGTTTTG 410 36 100.0 35 .................................... CCGATGATTTTCAAAACTACGGATCAGGGAACGGT 339 36 97.2 36 ..........................T......... ATGGACTTTTGAATATTACAAATTTAGAAGATAAGT 267 36 97.2 35 .....................G.............. AGTCTATTTTGCACTGCTAACGGTTTCAGCATCTC 196 36 100.0 36 .................................... GCGGGTGCGGTGATTTTAAATCCGATTTTCCAACAA 124 36 97.2 36 .....................G.............. ATGCGGCGTTTTTTTCTCACCGATTACTTTTAATCG 52 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 8 36 98.6 36 CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Left flank : TAATTTTGATGCCGTTAGGCGTTGAGCACACAGTAATGCAATCCTTGACTTTGGTTCAGGTGCTACCTGAATATAACTTTGATGCCGGTAGGCGTTGAGCACTCGTAAAGATCGTCTGCGTGTTCGTCGTGATACGTGTCTGAATATAACTTTGATGCCGTTAGGCGATTTAGGATGAAGAGAAGATTTGTTTTAGCCCAAATTGTTTTACACAAACGTGCAAACGGATAAAATGTAGGAACTACTGCTTTTCCGAAAAACGGTGCTTTGTTCAAATAAATGTGGGAACTCCCACTTTGAAAAAGAGAGGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCAGGATGCCGTTAGGCGTTGAGCACTTAAAAGTAAATGGGGTATAACATTAAATTCTTT # Right flank : CAGTTGGCACTTTTCGC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC # Alternate repeat : CTGAATATAACTTTGATGCCGGTAGGCGTTGAGCAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //